sod3a


Basic Information

Item Value
gene id sod3a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18849165 ~ 18851580 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936168.2
TCAATAAAGCAATGTATCACGTCAGTGTGTTCCTGACCAGCAGTGGGGTAGAAAGTCCAAGATTCCACATTTCGTCTGACGACTCTGTTGGAATAAGAACTTACAGAAATGATGAAGCTAATCCACAAGGGAAATAATATGTTACCACTGCTTCTGACCTGGGTGATACTTGTGCACACTGGAGAAGGGATTGCATTTAATCATAGCAAAATGTCTGTTGTTGAAGCTCCTATTGAGGTTACCCTCTTCAATGGAACTCTGTTTGCCACCTGTGAACTCAAACCTGACCCCAATCTTCCCACTGGCCAACCTGAAATATATGGACAGGTTCTCTTCAAACAAACCTTCCCAGCAGGCATACTGCAAGTGCTGATCAATGTTCATGGCCTGCCCACTGATGACCAACAGAAACGAGCTATTCACGTCCATCAGTTTGGAGACCTGAGCCAAGGATGCATCACTGCTGGTCCACACTATAATCCCCTGGGAGTGGACCATCCCACACACCCTGGTGATTTTGGCAACTATGTGGCCATCAATGGAGCTATAAGGCAACATCTAAACATGGAAAGGGGCACCCTATTTGGAGGTCATTCGATTTTGGGACGCGCTGTTGTGATCCATGAGAAGGAGGATGATTTAGGGTTAGGGCCAAATGAAGAGAGTAAACGAAGTGGGAATGCAGGAAGAAGGATTGCTGGATGTGTCATTGGCATCTCGCCTCCTAGCCTGTGGGAGAAACTCACCAAGGAGGTGGAAGAGGGGAAGAGTGATAACAGCAAGGCAGAAAATGAAACATAGGAGAGGAAGTGTGAGAGATGGATGAAGGAGACAAATTAGGAGAAGGCATACTACATACTTTTCTGTTTTGAGCATAATGAATACATTCTAATGGTATTTTGCAAACACAGAGATCACTATCATGGAGAAGTCATGATAATCTTTATATCTTTTGACTAATGTGAATCATTTGaccatacataaaaaaaaaaaaacagatcaggaTTTTGGGAAGAGATGATGCCTGAGTATTTCTCcaaaagtgtttaaatgttgATATGACTGTATAAGCCCATTATATAAGAGAGGCTTGCACGCTCAGTAATCCAACTTTGACACATTTTCAGCACAGACATTTCAAAGCATAGCACTTAAAGAATTTCACATCTAattcataatacataataaacaaaaagacaCATTTATAACCAAATAGATACCAACTATCAGTCTTTTCCTTGCTGGTTGTTATAGTAAATATCCCAAAActcatacataaaaatattatgtttcaATTCATGAGGTTACTACGATAGTGgacatattttgtaatattaagTAGTAcatttgtgaatttgtgaacGACACAAGGagtttaacaggagtgtgtaagCTATCTAAGAAAATATTAGGTGAAAGTGTGAGCCTGTATGAACGATAAGCCTACAGCAGAGGCCCATGAGATTTATGATGTATCCAGCAACCATGAACCCATACACCACCTCAGTTCtcagtttagaaaaaaatcaaatggaCAATAAATTAAGGCATAAAACTCAATGTTCTGAGTGCTTCTTCATATGGTCTCTTTGGGAACATTTTCCATGTGGGCAGCACAACAACAATACCTGGATCCGATAAATAAGTTAAGGAAGAATGTGAGAAGTCAACATCAATTTTGTGTGTGGCCAGGGTCAAGCTGACTGGACTGGAGTGATCTGCCAATTTGTTCAGTCAAGTAACTTCATTATTTAAACAGTAAAAGTCATGACTGAAACACTTGATTATGGCATattgtaaatttatacaatgcATTTAGCTGTATTTCAGACATTCAGACACTACTAGTCAACAGTTTGGACAGACTAGATTGAGTGTATGCTTTTCGCTGTCTTAAAGGCAATTTGGTAAAGACTCGTTtctaaaacaaatgtaaataattaagtaaatctatattaaatttatttaggaatcaaattgtatttttaaaaagttttatggAACTTAGGAGAAGCAGTCAACAAGTGTCTGCTTATTTGGAAATGTTCCTCATGAGGTCGTTGAGAAGatgccaagagtgtgcaaagcttcatcaggaatactgttatgaatttgaaaaataaaagttttgatatgtttaa

Function

NR:

description
PREDICTED: extracellular superoxide dismutase [Cu-Zn]-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0019430 removal of superoxide radicals biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16627 SOD3; superoxide dismutase, Cu-Zn family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936168.2 True 2141 mRNA 0.38 2 18849165 18851580

Neighbor

gene id symbol gene type direction distance location
gba3 LOC108267130,LOC108437095 coding upstream 418806 18426358 ~ 18430359 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding upstream 605368 18221624 ~ 18243797 (+)
rap1gds1 rap1gds1,LOC107552992 coding upstream 766735 18049289 ~ 18082430 (+)
spata6l spata6l coding upstream 821114 18020211 ~ 18028051 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding upstream 830086 18015129 ~ 18019079 (+)
ppp1r15a NA coding downstream 99467 18951047 ~ 18954000 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 319119 19170699 ~ 19327377 (+)
etnppl etnppl coding downstream 476451 19328031 ~ 19338707 (+)
trmt44 trmt44,LOC107710993 coding downstream 502800 19354380 ~ 19372755 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding downstream 537025 19388605 ~ 19393118 (+)
G66855 NA non-coding upstream 15338 18828179 ~ 18833827 (+)
G66754 NA non-coding upstream 179915 18669042 ~ 18669250 (+)
G66670 NA non-coding upstream 357584 18491372 ~ 18491581 (+)
G66654 NA non-coding upstream 418029 18430562 ~ 18431136 (+)
G66637 NA non-coding upstream 467003 18381956 ~ 18382162 (+)
G66865 NA non-coding downstream 7462 18859042 ~ 18863417 (+)
G66888 NA non-coding downstream 58066 18909646 ~ 18910488 (+)
G66887 NA non-coding downstream 59477 18911057 ~ 18911397 (+)
LOC113540244 NA non-coding downstream 269258 19120838 ~ 19122624 (+)
G67205 rpl34,LOC107573163,LOC107566275,LOC107681344 non-coding downstream 494264 19345844 ~ 19351904 (+)
G66492 LOC108267609,LOC108437090 other upstream 640601 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 705534 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 838203 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1229086 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 1447777 17335497 ~ 17401388 (+)
G66864 NA other downstream 4876 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1139104 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 1296215 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 2168678 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 2462638 21314218 ~ 21323967 (+)

Expression


Co-expression Network