chst2a (LOC108268021)


Basic Information

Item Value
gene id chst2a
gene name LOC108268021
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29333119 ~ 29336703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936180.2
CCTCAGCTCGTGTGGAGTAGTAAACAGGAGCCTGGGAGAGGAGTCGCTTCTGCTGCTCGCCGCATCAAATCCAGCTCGTTATCCATCCCAGAAACGTTCACAGTGTTTTCAGGAGTGTGATATTTTCAGTGGGACTTAAAATGCGCGGATATGTCGTTATTTTAACCACGGGTTTGCTTTTATTAACCTAGTACTGCAACGTGAGGTTAAAAAAAGCTCAGGGATGCTGCATGGTAAGCAGAGGCTGCAGCATTGACTTGGCTTTATCTTTATAAGTACTAAATGTAATTAGGTTTGTAATTAGTCTGTATCCAGACAAGTCCAGCTTCTCGGTTGGAGAGTTCCCCTGGAGAACTACAGCTTAATCGATGTTGATCGAATGGGCCCAGTTAGgactcatcctcatcttcatcttcatcctcaacCTCGTCAACGCACAGCCACGACGCTCCTGCCTCCGCTAATATCGAACCGTAATATCATCCCGTcctaaatgaaaaataagccATTCCTTGTTAAACCATCATGGGAGAAAGCGTTCGGAAAGAAACCCAGAACGTACTGCAAAAGCCACACCAGGATCATCGCCAACCCTGGCCTGGTCATCAAAGTGCTGCGTCGGAAGAAGATTGTCGTGTTTCTTGCCTACTTTATACTTGTGGCGCTGACCATGCTGAACCTGGCTAACTACAAATGGGCCAAAGAGTCTCAGCCGTGCAGCCTCCAGGTGAGCGATAACGTGAACTTCCAGAACAGACCAAACTTTCACTTCCTTTACAAGACCCCTCAGGTGAGAAAGCGGCAACTCGTCTACGTGTTAACCACATGGCGCTCGGGCTCGTCCTTCTTCGGCGAACTTTTTAACCAAAACCCTGGAGTGTTCTTTTTGTACGAACCATTGTGGCACATTTGGCAGAAACTCTACCCTGGAGATGCATTGTCACTCCAAGGAGCAGAGAGGGACATGCTTAGTGCTCTGTACAGGTGTGATTTCTCAGTTTTTCAGTTGTACAACACTCAAGCTGGGAAGAATATAACCACTCTAGATGTCTTTGGTGCCCCACTTAATAAAGTCATCTGCTCCTATCCCCTTTGCTCATTCTATAGAAAGGATGTGGTGGGAATGGTGGACGAAAAAGTGTGTAAGAAGTGTCCACGTCAGAGCCTTCCAGCATTGGAGGAGCAGTGCCGAAAATATGACACCGTCGTGATTAAAGGAGTACGCGTTTTGGACATAAATGTCTTGGCTCCTTTGATAGAGGACCCCTCGCTCAATCTGAAAGTGGTCCACTTGGTGCGGGACCCACGAGCCATGGCCAACTCCAGAATTAGATCCAAGCATGGCCTGATTCGGGAGAACCTGCAAGTGATGCGGAGCAGGAACCCAAAGATGCGGCGTGTGCCGATGGTTGACCCGAACCATAAAGCTGGCAGGAAGGATGTTTCAGACTACCACGCCATCGGAGCCATGGAGGTGATTTGCGAGCACATGTCCAAGACTCTGAAAACGGCACTCAGCAATCCTAGCTGGCTCAAAGGGAAGTACATTATGGTGCGATACGAGGACTTGGTGGAAAACCCAGTCAGGACCTTAAAGCGTGTTTACCACTTTGTAAACCTGACAGCCAGTCGCGACATGGAAGCTTTTGTCGTGAACATGACTAGTGGCCACAGTAACTCTGCCAAACCTTTTCAAGTTTCGTCCAGGAATGCGACCGTTGCCGCTAGCACGTGGAGAACTGTGCTCACCCTCCAACAGATTCGGCAGGTGGAGGACTACTGCCGTCATGCCATGTCTATTCTTGGATATGTACGTGTTCGCACGTTGTGGGAGGTGAAGGACCTGAGCAGGAGTTTATTAACTTTACCCAAGCTCTGAAACTCTGTGGTGACCAAAGAAAATGCAATTGCATCATGGCTTACACTAATTCGAGATACATTGGTACATTGGAAGACATCGGAAATGCATTGTGAGTTTGCACTTCGAATTGAGTGTGGTAGACTTTTTGATATGGTGTGAATGTTTGGATACTAGGACTGGAACCATTTGACCACAACTgaccaaaaagacaaaaaatacctTGTATTTGGTGTCTGATTTACCATTTAAGCTGTGCCAAGATGTAAACTCAGAAAACTGAGATTGCTTTATAACAAGCACAGCTTTGGAGCTTTCTTCTTTTCCGTAGACAATCTTTCTTTCTATTGGAACAGAAAGCTTCTGATACATTTCACAGTAATGTGTGGGTGATGCCCCAAGACTTTTGGGCTTCACACACACGTCTGAAGGAGTGGAAATGTACTGAATTGTGGGAAATTCACCATATTGACTCTATGCTTtctgatataaatatttaacgATGCAGGGTATATTTTTTAGGAATGTTTCAGACTACTATTCTACTGGAGCTTTGGGGTTTCTGGTCACAGCAATTAATGTGAACTTATTTCTGGTTATGgtttgaaataatgagaaacttaatgagatgaagtgccttgtttggaaaaaaaaaacaatgaaagccatgaaaaaaaaccctcacaattctctttctttcctcatcATACACTTTCACCCCAAAATCTGGTTATGGATGCATCTAATCAAGGTTTTTCTGCGTTTGCATTGACGAAAACAAGAAAGCTGTATATCCTTTTCTTTAAACCCCTTCATCTTGATTATATACTCGAGTACAGGTCATGTGGTGTTTAAAAATAGCAAGTGATGCTGCTGAAACGAGATCATTTTAACAAACTGTTTCCTGCTTGTATCACAAAAATCCCTCTTAATGTAGTCCttcatcccaaaaaaaaaatctgactctAGTAACTGAAGAAAGTAAGGAGATTAGGTTTGCTCCTCAGGGACGCCCTGGCTTCAGAGTCTTGCAGGATTCACAAAAGTAGTGAAGTATGTCACGGAAATAGTACGAATAGCAGCAGCGCTAAATAGGGACACAGTATTCAGGGAGGATGTTAAGTGGACACAGAGGGACCTCAGATGGGGACCTGATGGCTCTCAGAGCGAAGCCTTGGCAACTGCTCTGGCTTCCTGCCATCTCTTCTCTTCCACTCcactgtttatctctctctctctctcagtctctctatTATAAATCAGAGGAAGAGTGTGAGAGTTTAAAATGACATCTGGctaattaattatttctttttttatcatggATTTGTCAAAAGAGAGACAAGAGCCCAGCTTGTTTAgtttttctgggaaaaaaaacataacagccTCCGATTCGAGGTCTCAGTCCTCAGCGCTACGCTCAATCACATTTGCATTTGCtcttttacattatgtttaGCTAAGCAAACGTTTACATGCTGAATGATGACCTGTTTTAATGTGTGCGGGAATGAGGCAACATAGTGTACcgatgttctgtgtgtgttttattttggggCGAATACAATAATTATAATCAAAGTCCGTAATTCGGAAAAGGAGGAAACAGGCGAAGGGCAAAGCCAGGAAGTACCCTGAGACACAGCACTTTGAAAACAAGGCTTGGAcaattacaataacaataatacacaaaaGTAACCAGAAACAGCAGGATAGGACTAGAC

Function

NR:

description
PREDICTED: carbohydrate sulfotransferase 2-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936180.2 True 3585 mRNA 0.44 1 29333119 29336703

Neighbor

gene id symbol gene type direction distance location
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding downstream 10202 29300306 ~ 29322917 (-)
zzz3 zzz3,LOC104950552 coding downstream 185627 29131186 ~ 29147492 (-)
pigk pigk,LOC107751867,LOC107599845 coding downstream 255683 29055012 ~ 29077436 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding downstream 414967 28911613 ~ 28918152 (-)
LOC117597036 NA coding downstream 452917 28877573 ~ 28880202 (-)
pcolce2a LOC108268019 coding upstream 22797 29359500 ~ 29371526 (-)
mfsd8l2 LOC108267997,LOC108437504 coding upstream 105412 29442115 ~ 29452793 (-)
kcnmb2 NA coding upstream 124338 29461041 ~ 29466020 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding upstream 182388 29519091 ~ 29530681 (-)
LOC113540702 NA coding upstream 186691 29523394 ~ 29523466 (-)
G73327 NA non-coding downstream 12785 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 114961 29216270 ~ 29218158 (-)
G73318 LOC107599861 non-coding downstream 118068 29213553 ~ 29215051 (-)
G73247 NA non-coding downstream 136952 29128055 ~ 29196167 (-)
G73249 fubp1 non-coding downstream 143779 29188158 ~ 29189340 (-)
G73423 NA non-coding upstream 203392 29540095 ~ 29540356 (-)
G73439 NA non-coding upstream 270898 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 334484 29671187 ~ 29674270 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding upstream 374383 29711086 ~ 29712194 (-)
G73458 LOC108267889 non-coding upstream 376190 29712893 ~ 29713446 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 161198 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 448154 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 541290 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 680694 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 1096314 28236724 ~ 28236805 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 227518 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 387885 29724588 ~ 29730857 (-)
G73619 blvra other upstream 682803 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1404824 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1436746 30773449 ~ 30775819 (-)

Expression


Co-expression Network