si:ch211-252f13.5 (LOC108267682)


Basic Information

Item Value
gene id si:ch211-252f13.5
gene name LOC108267682
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27509850 ~ 27517204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936183.2
cacacacacacacacacaccgccgaACTTTCCCTACAGTGCTGATACACGGTGCTTGCATTTACACTCTCCTGtgttatgtaataatataacgGTTATTTTCGGATTGTCCGGGATGCGCGAGGATTCCTAAAAAGGGTGcgggtgtttttttgttttgtttaaaatggcacCCATCTCAACACTTCTGTGGCTCGCGATCTGCGTGGTCGCGTTTGCAGGAAGCGCGGCCGAGGTGTGCGGGGGAGTGCATTGCCCGGGCGCGTGCACAGGCGCGCGGTGCGCCTCGGGTCGCGCGGACACGCTGCGGCGCCCGGTCGTGCCGTACACCATCATCCACCCGTCCGTGGTCGCGCGCCAGGAGAACGCCAGGAGCAACAGTGCAGCGGTGGAGGCGCAGGCGCAGGCGCAAGCACGAGCACAAGCACGCGACGGCTGCGCTGGCGTTGAGCAGTGCGCGCAGACCAAGCGGCGCCCGTGCGCCGGGCGCGAGTGCATCACGCACATGCGCGACGGAGCAGAGCGCGCGCCGCGGGAGTTCGGATCCCAGAACGGAATTCAGCTCGCGTGTGACATCAAACCAGGCTCTAACGAAGTCCCATCTGAGGATGCCCTGGTGCTGCAGATTCACGTGGCGAAGGGGCAGCAGAAGCTTGTGGAGGAGCTCCGGGCTCAACAGGCTGAGGTCAGGCATCTCCAGAATGGCTTGAAGGATCAGCAGGACATCCTGCTGGCCCAGCAGAAGGAGATTCTGGACCAACAGCAGAGGATTTACGAACAGATGGAGCAAGTGAAGGTGCAATACCGCCTGGTTATGGACAACTTCAGAAATGTGGCCCAATACAAAGATCTAGAGGGCAATCTGGACAGCCTCAGGTCTGAGATAAGGACACACAGCCGGGAAGCTTACACTATACCCAAGGTGGACATGGAGGAGAGTGTGATGGAGGTTGGAAGACAGATGCCTGGTTGCAGCTCCTGTCAAGCAGATGAGTATTGCAGTTTTAGTGGGGATTGGCCAAGATGCGAGAAGTGTACCATTTGTCTTCCGGGATTTTTCCTGGTATCCCAGTGCTCCCTTCACGCTGACAGGATGTGTCAGGACAGAGATGAATGCTTGGAGATGCAGCACTTATGTGGTGACCAAAACCGGTGTCTCAACACGCCAGGTGGATTCAGATGTACAGGAATGTCGGCAAAAGACGCAGCTGCTGGAATGTGTGGTCATTCTTATTTCTACAATTCCGAGCTGCAGGAATGCCAGGCTTGCTCGGAATGTGATTCCCAGATCATGGCATCTCCTTGCTCAGCTATGAGGGACACTGTTTGTTCCAGCTCGTCTGAGACCAGATTGTCCCTTTCCTGGTCTGGGGAGGTTTCTCTGGTCCAAGGTAGCGAGTTTCCCAACATGCAGTTGCGCATCCAAGGGCACAGTGATGGAGCACTCGTTTCTTGCACCAACAATTGGTTAGTTCTGCATCAGCATGGACTTGTCTGGGTCGACCATAACCTAGCTTTGAGGCACAGATGTAGTAGTTTTATCCAAGCAGGTTTGAGGTTGAATTCCAGCGAGGATGGAGGAAGGGACCTGAGCGGAGTGCGCGTAGAGCAAAGAGAAGGGAAATCCCTCCAGAGCATCAGTGTAACCGGGGTGACTATTGTGGATCCAGGTCACATGTTGTCCCTGTTTCTTAAGAGCACTAGCAATCATTGTAATACTGAAAATGAGAAGGTGCACCTTCAACGAGGCCTCGTGGCACCATTCAGTTTGCTCTGGCTCTCTCATGATACAGGCGCTATAGCCATGACTGCTCAGACCGTGGTTTCACCGCACTTCCATACCAATTACCGGCCTTCCTTTCGTACATCTTCCATCTCTGATCCCTACATGGTGACTCTGAGCCATGACAATCGTGGTATACGCTTTACAGAGAAGGGcacagtgaaatttattttgcaaCAAGCGGTCTACTCAATGGGTCAAGCTTGTGTATCTGAGGGATTCTTCCTATTAGCGTATGTCAACCGGAATGGAAGCAGTGTTGAACTGACGAGAGTCTTCAGGCCTGGTGTTCACTACAGAGACACATCCATATCTCTTTCCACCGCCACTACAGTGGACGCTGGCGACACTCTCACTTTTGAAATCCTAGCACCAGCACAGTGCAGTGTGCGCTACTTCTGTGATGACTCTGGGATTAGCATGCTAAGTCTGATGTGGATCCCTTCCTCTGTGTCCTCTGCCCTGTCAGCTACTATATCCAAAAGAAGTCTTCCCTTTGGTGCTGTAAGGAACAAGCCCCTGTTTTTTCACCAAACATCCCCAACAGTGGCACAACTAGAGCTAGCTAGCACAAACAAGCAGCATGCGCATCGTAATTTCATCTTCCGGGAGGGAGGAACAGCTAGCGTTGCTCTGGACTTGAGGCTGATACACTCCTGCAGCATGATTGAACTTGCTTTGGTTCAGCAGGGAGCATCGCCAACGGTCCTTGCTCGCCAACTTGGAGGTCAGATGCCAGAAGGGAGTGAATGGGCTAGCTTAGGGCTCAGGGTGTCATTCCCTGTGCAAAACGGCACCGAAGTGTACGTCACGGTGGACTGCGTGCGGGGACGCCTTAACCAGATTGCCCATGATGCAGGAAGTAGCATTTCCATCCTCTGGATTGCAGCGTGAAGTTAAGTCACATGTTTAAGCATGTTTTAGCCTATTAATGATAGTCATATATCTAGTACAAGTAGTGATGGAGAAGGTAGCATTTCCATCAGCATGTTTCCATCAGCGAGTTTGatcatttttagttttaattgtATGTCTAGTGGAGCACAGGTAGTGACACAAGAAGTAGCATTTCCATCCCTCAACTTAGGGCATGTTTTAGCATACTTTAATACAATAGCCTAGCACAAAAAGTGATGCAGGAAATAGCGTTTCCATTCTCTGAAATTCAGTCGTAATTAAGCAGGTCACATGTTTTAGCTTGTTAGCAATAgtagtgtatatatagtatagggTAGCACAGGTCATGACACAGGAAGTAGCTTTTATACAACATAGCCTGCAGCATGAATTAAGAAGATCACACATTACAGGTGGTGACATAGGAAGTAGTATTAccattgtaaataaaaatgtttaatgtgctAGCTATAGttgtagtgtatatatagtatagctTGAGTAGGAACACAGGAAGTAGTATTTCCATCTTCTGGACAGGTTACTCATTCTAGCATGTTTTAGCTTGTTATCGATCACTATACAGTACATCTAGCACTGCACAGGTAGCGACAAAGAAAGTAGCCTTTATATCCTCTAGACTGCAACAAGAATTAAGCAGGTCAGAAGATTTAGCATGTTTGTAGTTTTATATCTAGTGTAGCACAGATTGAAGTCATAATCTAGCCTAGCGTAATTAGCATGATCGTGTCCTGCTAGTTCTCATGATGACAGTGAATGATTTTCTTGCTTTTGTTAGATGATAGCCATCACTCAGCTGTATAATTTATACAATGTTATGTAAAAATATGCTATCCATGTGTGTGGCTGAACTTTTTTGTGAAATTCATAACAAGCTAAATTTACTGCCGTCATCTTTATAGCTTAGCTTAAGCTTTCTGGTTATAGCCTACGctaattttaaattgttttgagTTTCGTTTTATTTAAACGCAGTTTAAAGTTGTGCATATTTAAATACCAAgtaaacatttgcattttatttgtagtGTTGGGTTTGATAGTGTTAGCAGTCGTATGAAAAATTAAAGACAAGACTTTTGTTTGAAGTATTTATATTCAGATGATTTTAGTATGTATTTTGTAAGCTAGTACCATAGCGATGTATCTTAAGTCATATAAATCAGTTATAGAAAAACAGGATTACAGCTTAACAATGTCGTTTGAAGTGAATATTTAAAGATATTAAGTGCGGATTTCAcacttagctttttttttcagtaaaaaaaaaacatctcgcATACGATGCGTAGCTAGGATCGGCTAAACaactagcctagcttgctcgctagattagatttattattgtcAGTAATACAGATGAACTAAAGATCGGTgtaactctggtgatgaggagaTTATTTGTCTTCACTGTAACTTCGGAGGCAAAAATCAAGACACAAACTACAAGCAACATGGGAGACTTATCGCTTGTTAATGTGTACATAGAGTTAGCTTGTATTAGCATTGTCATTCCACTGTATTTTGGGGCTAAAGGTTAACATTGTgatgcaattttattttttgatgaaCTGTATGTACATAATGTATCATTGGTGCTTCGTCAGTACATTGCTGTATTACATTCTTacatattataaatacaaaagggaaaaaacatagtatgttttaaaaaataacacaaattaaTTTCCTTAATAAATTTTA

Function

NR:

description
uncharacterized protein LOC110509079

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936183.2 True 4407 mRNA 0.46 4 27509850 27517204

Neighbor

gene id symbol gene type direction distance location
abi1b abi1b,LOC108267643,LOC107671751,LOC107559371,LOC108430754,LOC107681778 coding upstream 1651 27495848 ~ 27508199 (+)
trnat-ugu_5 NA coding upstream 20525 27489253 ~ 27489325 (+)
zgc:55943 c7h1orf21,zgc:55943,LOC108430752,LOC103042176,LOC107709356,LOC107671715,LOC107559369,LOC107593773 coding upstream 32177 27468048 ~ 27477673 (+)
imp3 imp3,LOC107671714 coding upstream 43345 27460268 ~ 27466505 (+)
fam78ba LOC108267646,LOC108430701,LOC103149501,LOC101155797,LOC105925252,LOC103479089,LOC101481240 coding upstream 62602 27441509 ~ 27447248 (+)
ap2m1a ap2m1,LOC108267679,LOC108430755 coding downstream 17472 27534676 ~ 27546129 (+)
dvl3a dvl3a,LOC108268006,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding downstream 44945 27562149 ~ 27582022 (+)
trnat-ugu_6 NA coding downstream 103401 27620605 ~ 27620677 (+)
trnat-ugu_8 NA coding downstream 104107 27621311 ~ 27621383 (+)
prtfdc1b prdc1,LOC108430708,LOC105891346,LOC105019119 coding downstream 111244 27628448 ~ 27639961 (+)
LOC113540179 NA non-coding upstream 22139 27483820 ~ 27487711 (+)
G72012 NA non-coding upstream 49653 27459670 ~ 27460197 (+)
G72005 NA non-coding upstream 80628 27428419 ~ 27429222 (+)
G71980 NA non-coding upstream 128778 27380848 ~ 27381072 (+)
G71977 NA non-coding upstream 138172 27371473 ~ 27371678 (+)
G72118 NA non-coding downstream 35923 27553127 ~ 27555706 (+)
LOC113540592 NA non-coding downstream 38881 27556085 ~ 27559427 (+)
LOC113540695 NA non-coding downstream 39313 27556517 ~ 27556648 (+)
LOC113540696 NA non-coding downstream 40561 27557765 ~ 27557902 (+)
G72236 NA non-coding downstream 494540 28011744 ~ 28012459 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 103452 27384807 ~ 27406398 (+)
gng7 NA other upstream 628380 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 1134024 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1217066 26288290 ~ 26292784 (+)
G71385 NA other upstream 1280659 26228764 ~ 26229191 (+)
insig1 insig1 other downstream 785647 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 799200 28316404 ~ 28338173 (+)
gng5 NA other downstream 1241341 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1275643 28792847 ~ 28797159 (+)
G72873 NA other downstream 1357152 28874356 ~ 28912104 (+)

Expression


Co-expression Network