mrps14 (mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590)


Basic Information

Item Value
gene id mrps14
gene name mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25951154 ~ 25953899 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936184.2
acacacacacacacacacacacagtgtggacCTGTAAGCTACACTATGAGTCCCAGCCACTAGATGACGGTAACGATGTTCAAGTCCAACCGGCCTGCGGCTAAACGAGGAAATTTAACATGTCCGCTTGCAAAATGCTACGGTCTGGTTTGGGGTTACTTCAATCATCATTCCAGTTCACTAAACAGGCAGGCAGAAGTTCACTGGGAATCATGGAGCAGGTCCGGGGTTATTATGTCGACTGGAGAATGCTGCGAGATGTGAAAAGAAGACAGATGGCGTATGAGTATGCAGACACAAGACTGAGGATCAATGCCATCAGAAAGAACACACTCTTACCTAAAGAGTTACAGGAGGTAGCTGATAAAGAAATTGCTGCATTGCCCCGAGACAGCTGCCCAGTACGTATCCGCAATAGATGTGTGATTACATCACGACCCCGTGGAGTGAAACACAGGTGGCGTCTGAGCCGCATCATCTTCAGACAACTAGCGGACCACAACCAGATGTCAGGCATACAGAGAGCGATGTGGTGAAAACTTAACAATGGACAATTCAGTATTTACAGGTTGCAGCTTCAGTACGGAGAAGCCAGAGATCAACATGTTCAAAGTCCCAGCAGAAATGTATCATCCACATGTGCATATGAATTGCTGTTTTTGAAGATATTTTCCTGTAAAGTGTCTTCCTAGTAATATTTTGCTGCTTTGTGCATAATAAAGCTTATTCACTATGATGCTA

Function

symbol description
mrps14 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 38. Orthologous to human MRPS14 (mitochondrial ribosomal protein S14).

NR:

description
28S ribosomal protein S14, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02954 RP-S14, MRPS14, rpsN; small subunit ribosomal protein S14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936184.2 True 741 mRNA 0.45 3 25951154 25953899

Neighbor

gene id symbol gene type direction distance location
cop1 rfwd2,LOC107722073,LOC107726924 coding upstream 286744 25643402 ~ 25664410 (+)
astn1 astn1 coding upstream 398315 25270222 ~ 25552839 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding upstream 903837 25021613 ~ 25047317 (+)
klhl20 klhl20,LOC106569069 coding upstream 937848 24994877 ~ 25013306 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding upstream 1143750 24792295 ~ 24807404 (+)
cacybp cacybp,LOC100304883 coding downstream 1057 25954956 ~ 25964158 (+)
plk3 plk3,LOC107726922,LOC107557223,LOC107722069,LOC107658359,LOC107678927 coding downstream 19982 25973881 ~ 25979456 (+)
rasal2 rasal2,LOC107678931 coding downstream 89024 26042923 ~ 26124146 (+)
si:ch211-284o19.8 LOC108414935 coding downstream 360444 26314343 ~ 26318878 (+)
mettl17 mettl17 coding downstream 374028 26327927 ~ 26338595 (+)
G71163 tnn non-coding upstream 22414 25923952 ~ 25928740 (+)
G70813 NA non-coding upstream 261037 25653438 ~ 25690117 (+)
G70808 NA non-coding upstream 324217 25626713 ~ 25626937 (+)
G70798 pappa2 non-coding upstream 337478 25613444 ~ 25613676 (+)
G70782 NA non-coding upstream 360967 25589967 ~ 25590187 (+)
G71322 NA non-coding downstream 85283 26039182 ~ 26039383 (+)
G71329 NA non-coding downstream 174720 26128619 ~ 26128826 (+)
G71373 NA non-coding downstream 251659 26205558 ~ 26205786 (+)
G71374 NA non-coding downstream 254421 26208320 ~ 26208544 (+)
G71381 NA non-coding downstream 271013 26224912 ~ 26226337 (+)
LOC113539772 kiaa0040 other upstream 49148 25897017 ~ 25902006 (+)
tnr tnr other upstream 70044 25707827 ~ 25881110 (+)
kif2c kif2c other upstream 1079891 24859026 ~ 24871263 (+)
G69971 NA other upstream 1841265 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 1844931 24028106 ~ 24106223 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 262165 26216064 ~ 26224038 (+)
G71385 NA other downstream 274865 26228764 ~ 26229191 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other downstream 334391 26288290 ~ 26292784 (+)
LOC117597079 LOC108267150,LOC107738160 other downstream 399290 26353189 ~ 26375826 (+)
gng7 NA other downstream 918777 26872676 ~ 26881470 (+)

Expression


Co-expression Network