LOC113540033


Basic Information

Item Value
gene id LOC113540033
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16498973 ~ 16504549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936211.2
GAGTTTAGATCCAGAGCTGGTTTATAGGACTATAAGAGCTAGTGTCACTACCACAGTGCCTTCTGGTATAAGTGGCAGGATTTGGACCCACGGAGGACCTGTTAGAAGAGACCTATCCACTGTCTTTATCGAATTCACCTGAGACACCATGAGTACAGAGGCCGATATGAAGGAGGTGGAGCTGAATGAGATGGAGCAGGAGAAGCAGTCGATGAACACAGACACGGAGAAGAATGGCTGTGTGAAAGTGAAGGTTCCAGAGGAGAAAGAGGTCAAATTCACCGGCCTGACTAAAGAAGAGCTGATGAGAGTAGCAGGCACCACAGGATGGGTGCGGATTCGCTGGGTCTTGTTGGTTCTGTTCTGGCTCGGCTGGGTTGGAATGCTGGCCGGGGCAGTGGTGATCATTGTTCAGGCTCCCCGGTGTAAACCTGTTCCTGACATGCACTGGTGGAATGAGGGACCGCTCTACCAGATATCTGATGTGAACAGCTACTCTGAAGGCATTAAAGGAATAGAAAACAACCTGGACAGTCTGAACCAGCTGAAGGTGAAAGGGTTGATCCTGGGCCCAATACACACTGTTCAGGAGGACCAAATGAGTACATTGAATTTGAAAGACATAGACCCTGTGCTGGGCACTCAGAAAGACCTGGACAGCCTGCTAGAAAGAGCCCACAAGAAGGgtATCTCTATAGTGCTGAATCTGACACCCAACTATAAGGGAGCTGCAGCTTGGTTCAACAACGTTGCTGCTGCTCTTGAAAAATTTCAGGATGCATGTGCCTACTGGCTACAACAAGGAGTGGATGGCTTTCTCATTTCTGATATGAGCCAGGTTGTCAATACTGCTACCTGGAAGTCCATCCAGAATGTTATTCATCCCAACACCACAGAAGGGACTAAAAAAAGTGCTCTGATAGGTTCATTCACCAAGCTGCCTGCAGACAATGTCTCTCTGCTGCTGGAGAACACTGGAGTTGATCTGTTGCTAACCAGACTGCAAAGTTTTAATCTGTCTGGGGTACAGGAGGCTGAGGACATAATGAAGCTCTATCCCAGCCACTCTAGCCTTGCCTGGAGCCTGAGTAAACACACTTCAGATTTGCCCACACGCCTCTACCATATGCTGCTCTTCACCCTGCCTGGCACCCCAGTGTTCAACAGAGGGGATGAGGTTGGACTGATAGAGGGCGAATCCCTTACTGGAATTTGGGACTTGGAAAGTCCAGCTGAGGAGAACAATGAAACAGCAAAGactGTAAGAGCAGAACGCAGTGCAGTGCGAAGCTTCTTTAAGGCTCTCAGTGACCTTAGAGGTAAAGAAAGAGCTCTGCTGCATGGTGAATATGCCTCTCTACACAGCTCCATCTCCTCGTTTGCATTCCTCCGCCTGTGGGATCAGAGTGAACGCTTCATCACTGCCTTAAACTGGGGCAATTCCCCTGTCACAATGACGCTGACCAACAGCGACCTGCCTGCTGAGGCCAGGGTCCGTCTCAGTACAGATGCAGAGAAGCTAGCTGTGGACCGCATGGTGCCTTTGGAGAAACTGCAGCTAGAGGCCAAACAAGCTGTTTTATTGTCCTATCCTTATACAGGATAggtacattaataaaaatacacatgtaATAACACAAGGCTCCTTTTCAAAATAGAAAGCTAATGTTAAACAAGCTCTGTTTGTTCTCATCGCTATGCTCATTTTAGTTTTGGAATATGGAAGAATGCTGTGTCTGTTTTAGAAATTAGTTTCCTACAAAGTTTTATCTGTATTCTAATACTAACATATAAGGGCAAAATGGGTGCACTGAAACAGTATTATTACAGCTGGATAGGACATTCTAGCTTTGTGTGTATGGGCCaccatgaaaaaataaatgcaaaaaaaaaaataaacattgaatATGATG

Function

GO:

id name namespace
GO:0060142 regulation of syncytium formation by plasma membrane fusion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936211.2 True 1913 mRNA 0.47 9 16498973 16504549

Neighbor

gene id symbol gene type direction distance location
si:dkey-19b23.10 LOC108268326 coding downstream 3503 16482264 ~ 16495470 (-)
si:dkey-19b23.7 si:dkey-19b23.7,LOC108434614,LOC107683551,LOC107597093 coding downstream 28842 16465402 ~ 16470131 (-)
LOC113540674 LOC108268333 coding downstream 49143 16441079 ~ 16449830 (-)
LOC113540241 NA coding downstream 59768 16431936 ~ 16439205 (-)
snx15 snx15,LOC102775858 coding downstream 156149 16336256 ~ 16342824 (-)
zgc:103586 cda,zgc:103586,LOC108267558,LOC108434617,LOC105907191,LOC107597094,LOC107683547,LOC104927619 coding upstream 2424 16506973 ~ 16514848 (-)
LOC117596996 NA coding upstream 24257 16528806 ~ 16535886 (-)
LOC113539955 LOC108267556 coding upstream 47839 16552388 ~ 16564137 (-)
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding upstream 61515 16566064 ~ 16584533 (-)
otub1b otub1,LOC106608596 coding upstream 144636 16649185 ~ 16653787 (-)
G65508 NA non-coding downstream 47081 16451677 ~ 16451892 (-)
G65494 NA non-coding downstream 67455 16431136 ~ 16431518 (-)
G65493 NA non-coding downstream 69615 16429143 ~ 16429358 (-)
G65491 NA non-coding downstream 71566 16427201 ~ 16427407 (-)
G65472 LOC108267266,LOC107595290,LOC107702060,LOC107707052,LOC107738084,LOC108434590,LOC105907155 non-coding downstream 125826 16369532 ~ 16373147 (-)
G65700 NA non-coding upstream 101458 16606007 ~ 16606592 (-)
G65715 NA non-coding upstream 170711 16675260 ~ 16684591 (-)
LOC117597072 NA non-coding upstream 224142 16728691 ~ 16735897 (-)
G65718 NA non-coding upstream 231604 16736153 ~ 16737913 (-)
G65722 NA non-coding upstream 298646 16803195 ~ 16804254 (-)
tnfsf12 tnfsf12 other downstream 72349 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 427281 16054528 ~ 16071692 (-)
smim20 NA other downstream 506988 15973579 ~ 15991985 (-)
tbc1d19 tbc1d19,LOC107660707 other downstream 594618 15879471 ~ 15904355 (-)
G64436 NA other downstream 2255292 14232809 ~ 14243681 (-)
leap2 LOC100304644 other upstream 88013 16592562 ~ 16594505 (-)
bmp15 LOC108267203 other upstream 99260 16603809 ~ 16605717 (-)
G66053 NA other upstream 896045 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 934928 17439477 ~ 17444188 (-)
G66281 NA other upstream 1089199 17593748 ~ 17634868 (-)

Expression


Co-expression Network