zgc:103586 (cda,zgc:103586,LOC108267558,LOC108434617,LOC105907191,LOC107597094,LOC107683547,LOC104927619)


Basic Information

Item Value
gene id zgc:103586
gene name cda,zgc:103586,LOC108267558,LOC108434617,LOC105907191,LOC107597094,LOC107683547,LOC104927619
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16506973 ~ 16514848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936212.2
ATGTCTCATCAAGTTGCAGAACTGGTGGCAAAATGCTTGCAGGCACGAGACATGGCTTATTGTCCCTATAGCCAGTTCCCGGTTGGTGCTGCTATTTTGACATCAGGAGGTGCCATAATCACAGGTTGCAACGTAGAGAATGCTTCTTACGGCCTTACAGTTTGTGCAGAGCGAACAGCCATACAGAGAGCTGTAGCTGAGGGCCACAGAAGTTTTACAGCTATAGCAGTCACATGTGATATTAAAGATAGTTTTGTGGGACCCTGTGGGGCCTGTCGACAGGTATTAATGGAGtTTGGTACAGAGTGGGACATTTATCTGACAAAGCCTGATGGGGCCTATAAGAAAACAAGTCTGAGAGAGCTGCTGCCTTTAGCATTCAGCCCAGCTCACCTGGCAGAAGATGGCAATTAAAACAATAGCTTTTTAGGACAGTCTGTTTTGTTCTTCTTACTTTGAATTAGAAGTGTACATTGGGACTGCTAAAAAGTGGCAGGATCAGGTGGTTTTTTTACTCCCATTCAGGTGGGAGTTGGTGGTCAGATCTGAACCTCGCAGGACGAAGAAAGGCCAGGGAGTGTTCTGGATGCAGCAGATTGTTTCTGTGGCACTGTGCAGTGCACTTGTGCAATGCATTACTATCTTCCGGAAATGCATTATTCTGGTTAAGGTCACTGTTAAAtgactaatttatttatatttgggGGAATAAACTAAGATCATTAGAAAATATCGagggcaggtacaaacaaaaataagtgtgtaaaaaataacTGTGGAACCAGAAAGGATTGATCAAGCTTTCTGAAGTAGTGAGCaagattggggaaaaaagagtaCTGCACAACCTTTAACTCTACATCCCTACTCAAACCTTTTGTGATGTTGCAAATCAAACacttgcatttttgtttttttggggtcATGTAGGACGACTTCTGATATTCCATACCCTCAATTTTTCATATCCTCAGGTATCATCATTCTCAAGTTAGAGctataaaaatgttcatttagtAATAACAATCAGCCCTTAAATTAACCAATAAGcaattaacttttttaaaaaaaatttattttaagttatGAAATCTAGCCTTTGCTGATACTGAATCACGAATGTAGCTAAAGATGTACCACAAGAGGGCGCAACAAGAACAAGCGGTGCAGAATTTATGTATTGTTAGAGCACCACTGAACTAAAATCTTCAGAGAGCATGTCTCAAATTTAAATCAGCTCTTTCTTCCTCAAtatagatattttaaaatacatatttatttatatacataaatatttaacagcTTTGTAGTCATTTGAGTGTTCATCATCTTTCAGAGAACCTTTTCCCCTTAATTTGTGAAACTGAAAAGAAAGTGCTCAGTGTAGAGGAAGGAAAGTGTGGGATTTATCCATGTGCCCCTGGTGCCCCACGGGGCTGTTTGAAATTCTCCTCTGCGACATTGAGGGGACAACATTCAGTTCTGTCACCCGGGAAAAACACTCTGACATTGTTCTCtgtgagaggcagagagggagagagcgggGAGGGGTAAAAGCGTGAGAGAGAATGAacgagaggggaaaaaaacaagtaaaaggGAAAGACTACAAGCTAGACTTTGTTTCCATGAGGTACTACTGAAAGCAAGAAAATTACACTCATCTCAAAGCTAGAAGTGAGCAGTACTGAAGAGCTGATAAGATATAAGACATGAAGagataaaaaggaaaagacaaaAGGTGACAATAAAACGGCTGACAAGGCAGTGTTCACATTGGTGAAATAACATGGCTGAGCATTTCAGAAAGGGCAGAGCAGCTGAGAGCAGATGATAAGTAATAAGCAGcgagagtgttttttttcttggcctAAGCAAATACAGGACACAGCAGGACCTACTCGTCTcttatgtacacacactcacacagtttGTTAACACTGTTTTACTAGTCTTTGTTGTTTACACACattctgtatttaaatacaGTAGTTCAATGATAAGTGCTCATGTGCTACACACTTATAAATTGAGACATGTATCATACAA
>XM_026936213.2
ATGTGTCAAAGTGTTTACGCAGGAtatagctgctgctgctgcaaaaaaaaaagattaacttCCAGGTTTTACACAGTAAAACTACATAAGTTCTTGGTTGTCATATTACCTTCTTTCAGAAAAGTTTTATTATCTTTCATACTGGACATTAGCTTTCAGTGAACAATCACTGAAGATGGAAACAGAAGAAAGAACCTCTGTTTGTAAATCATTTACTGTGCTGCTGAATCTAATTGCTTGGATGCTTCTGGTAACAGCTGTGGGATTAGGAGCCATTCATTTCAGTGAATGCCCCATTCAGCCCTACATTCCTATATATCTGATTATTATTGGTGGGTGTGGGATCATTTTATTGATGTTGGCCTACTGGACGAACACGCTGCATGAAGGATTCTGGTGTCAGATCTGCATTCTAAGTATTATATGCATTAGTGTTTTCAGCATCGCCTGGTTTCTTACAGgAACAGTCTGGATTTACTCCATATATCCTCCAAGCTATAACTCCACAGCTGTGGGACACTACTGCCAGAGGACTCTTTACCTGTTTGCCTTTTGGTTCAATATCCTgggctttttgtgtgtgtttttttttgttccttgcTGTATATGTTATGTTTTGTACGAGTGTATTAGAACTATATTTGGATAATATCATGGTTTTGCTAGCATttaaattttgtaatatttgtccAAACTTTTCTAACTTTTGTATTACTGACACGTCCACtatctccattttgttttatatataattgtcTTCAGGTTCTAGAATATTACAACTCTCCCAGCTGAGACACCGCCCATTGGTCCAATAGGCGCGCTTAACAATGACGTAATCCGTGTCCAGCCAATGGCGAGTAGGAATCGAACATCACCGTTTAAGAGCTTACACAAACATGCGAGTGTTGACTTTAGGAAGTTATGCAGGGCTCTTTTAGGTCTTTACAAGTTCTCATATATAACGCGTCCCTGCTCTTTTAGACGCCATGGCTGTTGCAGAACTGGTGGCAAAATGCTTGCAGGCACGAGACATGGCTTATTGTCCCTATAGCCAGTTCCCGGTTGGTGCTGCTATTTTGACATCAGGAGGTGCCATAATCACAGGTTGCAACGTAGAGAATGCTTCTTACGGCCTTACAGTTTGTGCAGAGCGAACAGCCATACAGAGAGCTGTAGCTGAGGGCCACAGAAGTTTTACAGCTATAGCAGTCACATGTGATATTAAAGATAGTTTTGTGGGACCCTGTGGGGCCTGTCGACAGGTATTAATGGAGtTTGGTACAGAGTGGGACATTTATCTGACAAAGCCTGATGGGGCCTATAAGAAAACAAGTCTGAGAGAGCTGCTGCCTTTAGCATTCAGCCCAGCTCACCTGGCAGAAGATGGCAATTAAAACAATAGCTTTTTAGGACAGTCTGTTTTGTTCTTCTTACTTTGAATTAGAAGTGTACATTGGGACTGCTAAAAAGTGGCAGGATCAGGTGGTTTTTTTACTCCCATTCAGGTGGGAGTTGGTGGTCAGATCTGAACCTCGCAGGACGAAGAAAGGCCAGGGAGTGTTCTGGATGCAGCAGATTGTTTCTGTGGCACTGTGCAGTGCACTTGTGCAATGCATTACTATCTTCCGGAAATGCATTATTCTGGTTAAGGTCACTGTTAAAtgactaatttatttatatttgggGGAATAAACTAAGATCATTAGAAAATATCGagggcaggtacaaacaaaaataagtgtgtaaaaaataacTGTGGAACCAGAAAGGATTGATCAAGCTTTCTGAAGTAGTGAGCaagattggggaaaaaagagtaCTGCACAACCTTTAACTCTACATCCCTACTCAAACCTTTTGTGATGTTGCAAATCAAACacttgcatttttgtttttttggggtcATGTAGGACGACTTCTGATATTCCATACCCTCAATTTTTCATATCCTCAGGTATCATCATTCTCAAGTTAGAGctataaaaatgttcatttagtAATAACAATCAGCCCTTAAATTAACCAATAAGcaattaacttttttaaaaaaaatttattttaagttatGAAATCTAGCCTTTGCTGATACTGAATCACGAATGTAGCTAAAGATGTACCACAAGAGGGCGCAACAAGAACAAGCGGTGCAGAATTTATGTATTGTTAGAGCACCACTGAACTAAAATCTTCAGAGAGCATGTCTCAAATTTAAATCAGCTCTTTCTTCCTCAAtatagatattttaaaatacatatttatttatatacataaatatttaacagcTTTGTAGTCATTTGAGTGTTCATCATCTTTCAGAGAACCTTTTCCCCTTAATTTGTGAAACTGAAAAGAAAGTGCTCAGTGTAGAGGAAGGAAAGTGTGGGATTTATCCATGTGCCCCTGGTGCCCCACGGGGCTGTTTGAAATTCTCCTCTGCGACATTGAGGGGACAACATTCAGTTCTGTCACCCGGGAAAAACACTCTGACATTGTTCTCtgtgagaggcagagagggagagagcgggGAGGGGTAAAAGCGTGAGAGAGAATGAacgagaggggaaaaaaacaagtaaaaggGAAAGACTACAAGCTAGACTTTGTTTCCATGAGGTACTACTGAAAGCAAGAAAATTACACTCATCTCAAAGCTAGAAGTGAGCAGTACTGAAGAGCTGATAAGATATAAGACATGAAGagataaaaaggaaaagacaaaAGGTGACAATAAAACGGCTGACAAGGCAGTGTTCACATTGGTGAAATAACATGGCTGAGCATTTCAGAAAGGGCAGAGCAGCTGAGAGCAGATGATAAGTAATAAGCAGcgagagtgttttttttcttggcctAAGCAAATACAGGACACAGCAGGACCTACTCGTCTcttatgtacacacactcacacagtttGTTAACACTGTTTTACTAGTCTTTGTTGTTTACACACattctgtatttaaatacaGTAGTTCAATGATAAGTGCTCATGTGCTACACACTTATAAATTGAGACATGTATCATACAA
>XM_026936214.2
ctgttttggaggcacaagggagacctacacaatattagTTGCAGAACTGGTGGCAAAATGCTTGCAGGCACGAGACATGGCTTATTGTCCCTATAGCCAGTTCCCGGTTGGTGCTGCTATTTTGACATCAGGAGGTGCCATAATCACAGGTTGCAACGTAGAGAATGCTTCTTACGGCCTTACAGTTTGTGCAGAGCGAACAGCCATACAGAGAGCTGTAGCTGAGGGCCACAGAAGTTTTACAGCTATAGCAGTCACATGTGATATTAAAGATAGTTTTGTGGGACCCTGTGGGGCCTGTCGACAGGTATTAATGGAGtTTGGTACAGAGTGGGACATTTATCTGACAAAGCCTGATGGGGCCTATAAGAAAACAAGTCTGAGAGAGCTGCTGCCTTTAGCATTCAGCCCAGCTCACCTGGCAGAAGATGGCAATTAAAACAATAGCTTTTTAGGACAGTCTGTTTTGTTCTTCTTACTTTGAATTAGAAGTGTACATTGGGACTGCTAAAAAGTGGCAGGATCAGGTGGTTTTTTTACTCCCATTCAGGTGGGAGTTGGTGGTCAGATCTGAACCTCGCAGGACGAAGAAAGGCCAGGGAGTGTTCTGGATGCAGCAGATTGTTTCTGTGGCACTGTGCAGTGCACTTGTGCAATGCATTACTATCTTCCGGAAATGCATTATTCTGGTTAAGGTCACTGTTAAAtgactaatttatttatatttgggGGAATAAACTAAGATCATTAGAAAATATCGagggcaggtacaaacaaaaataagtgtgtaaaaaataacTGTGGAACCAGAAAGGATTGATCAAGCTTTCTGAAGTAGTGAGCaagattggggaaaaaagagtaCTGCACAACCTTTAACTCTACATCCCTACTCAAACCTTTTGTGATGTTGCAAATCAAACacttgcatttttgtttttttggggtcATGTAGGACGACTTCTGATATTCCATACCCTCAATTTTTCATATCCTCAGGTATCATCATTCTCAAGTTAGAGctataaaaatgttcatttagtAATAACAATCAGCCCTTAAATTAACCAATAAGcaattaacttttttaaaaaaaatttattttaagttatGAAATCTAGCCTTTGCTGATACTGAATCACGAATGTAGCTAAAGATGTACCACAAGAGGGCGCAACAAGAACAAGCGGTGCAGAATTTATGTATTGTTAGAGCACCACTGAACTAAAATCTTCAGAGAGCATGTCTCAAATTTAAATCAGCTCTTTCTTCCTCAAtatagatattttaaaatacatatttatttatatacataaatatttaacagcTTTGTAGTCATTTGAGTGTTCATCATCTTTCAGAGAACCTTTTCCCCTTAATTTGTGAAACTGAAAAGAAAGTGCTCAGTGTAGAGGAAGGAAAGTGTGGGATTTATCCATGTGCCCCTGGTGCCCCACGGGGCTGTTTGAAATTCTCCTCTGCGACATTGAGGGGACAACATTCAGTTCTGTCACCCGGGAAAAACACTCTGACATTGTTCTCtgtgagaggcagagagggagagagcgggGAGGGGTAAAAGCGTGAGAGAGAATGAacgagaggggaaaaaaacaagtaaaaggGAAAGACTACAAGCTAGACTTTGTTTCCATGAGGTACTACTGAAAGCAAGAAAATTACACTCATCTCAAAGCTAGAAGTGAGCAGTACTGAAGAGCTGATAAGATATAAGACATGAAGagataaaaaggaaaagacaaaAGGTGACAATAAAACGGCTGACAAGGCAGTGTTCACATTGGTGAAATAACATGGCTGAGCATTTCAGAAAGGGCAGAGCAGCTGAGAGCAGATGATAAGTAATAAGCAGcgagagtgttttttttcttggcctAAGCAAATACAGGACACAGCAGGACCTACTCGTCTcttatgtacacacactcacacagtttGTTAACACTGTTTTACTAGTCTTTGTTGTTTACACACattctgtatttaaatacaGTAGTTCAATGATAAGTGCTCATGTGCTACACACTTATAAATTGAGACATGTATCATACAA

Function

symbol description
zgc:103586 Predicted to enable cytidine deaminase activity and zinc ion binding activity. Predicted to be involved in cytidine deamination. Predicted to be active in cytosol. Is expressed in myotome; otic vesicle; pectoral fin musculature; and somite.
cda Enables several functions, including cytidine deaminase activity; protein homodimerization activity; and zinc ion binding activity. Involved in cytidine deamination; negative regulation of cell growth; and negative regulation of nucleotide metabolic process. Located in cytosol. Implicated in lung non-small cell carcinoma.

NR:

description
cytidine deaminase-like

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K01489 cdd, CDA; cytidine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936212.2 False 2049 mRNA 0.40 4 16506973 16509563
XM_026936213.2 True 3029 mRNA 0.40 8 16506973 16514848
XM_026936214.2 False 2074 mRNA 0.40 5 16506973 16509694

Neighbor

gene id symbol gene type direction distance location
LOC113540033 NA coding downstream 2424 16498973 ~ 16504549 (-)
si:dkey-19b23.10 LOC108268326 coding downstream 11503 16482264 ~ 16495470 (-)
si:dkey-19b23.7 si:dkey-19b23.7,LOC108434614,LOC107683551,LOC107597093 coding downstream 36842 16465402 ~ 16470131 (-)
LOC113540674 LOC108268333 coding downstream 57143 16441079 ~ 16449830 (-)
LOC113540241 NA coding downstream 67768 16431936 ~ 16439205 (-)
LOC117596996 NA coding upstream 13958 16528806 ~ 16535886 (-)
LOC113539955 LOC108267556 coding upstream 37540 16552388 ~ 16564137 (-)
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding upstream 51216 16566064 ~ 16584533 (-)
otub1b otub1,LOC106608596 coding upstream 134337 16649185 ~ 16653787 (-)
fam113 LOC108268071,LOC108434623,LOC107741458 coding upstream 141092 16655940 ~ 16661187 (-)
G65508 NA non-coding downstream 55081 16451677 ~ 16451892 (-)
G65494 NA non-coding downstream 75455 16431136 ~ 16431518 (-)
G65493 NA non-coding downstream 77615 16429143 ~ 16429358 (-)
G65491 NA non-coding downstream 79566 16427201 ~ 16427407 (-)
G65472 LOC108267266,LOC107595290,LOC107702060,LOC107707052,LOC107738084,LOC108434590,LOC105907155 non-coding downstream 133826 16369532 ~ 16373147 (-)
G65700 NA non-coding upstream 91159 16606007 ~ 16606592 (-)
G65715 NA non-coding upstream 160412 16675260 ~ 16684591 (-)
LOC117597072 NA non-coding upstream 213843 16728691 ~ 16735897 (-)
G65718 NA non-coding upstream 221305 16736153 ~ 16737913 (-)
G65722 NA non-coding upstream 288347 16803195 ~ 16804254 (-)
tnfsf12 tnfsf12 other downstream 80349 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 435281 16054528 ~ 16071692 (-)
smim20 NA other downstream 514988 15973579 ~ 15991985 (-)
tbc1d19 tbc1d19,LOC107660707 other downstream 602618 15879471 ~ 15904355 (-)
G64436 NA other downstream 2263292 14232809 ~ 14243681 (-)
leap2 LOC100304644 other upstream 77714 16592562 ~ 16594505 (-)
bmp15 LOC108267203 other upstream 88961 16603809 ~ 16605717 (-)
G66053 NA other upstream 885746 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 924629 17439477 ~ 17444188 (-)
G66281 NA other upstream 1078900 17593748 ~ 17634868 (-)

Expression


Co-expression Network