LOC113540051


Basic Information

Item Value
gene id LOC113540051
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24013856 ~ 24016743 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936232.2
TAAGCGCAATCCGCAGACTCACACAGTTCAGTCGTCCTACACAACATGGATGGTGCGCTGAAGGTGTTGCTGCTGGCAGCCCTGATTCTGCTGGTTTCTGCCCAGACGTTTAATAACTACAGAAGCTTGTCTGATGTATTACGAAAACACATTGACAAAGCGCTGAAAAAGGCAAACCAGCACTTTGGAGCGGGTCATCATGTTGCTTATGAAACACTCAGAAAAACTCCGACGACTATGGAGAGCAGCCTGAACGTAAATGTCCTTCTGAAAGTCACGACATGCAAGAAGGCTTCTGAGGATGCATATGAGCACCGAGATGAATGTGTTACACGAAAAGAACAAACGCCCTGGATTGACTGCCTTGTGTGTAAGACAAATGATGGTACAGAACTGGTTGATTGTGGCACAGTGAGACAAGTCATTACAAAAATGCGGGATAAATTTCGAAATAACTGTAGGGCACATTTTCATGGAAGTAGCACTGCCTTCCAGAAATCTGAGGATGACAAGCAGATCGGATGTCTCGGATGTATGTGAAGCGGCACAAATCATAACAGCACAGATTCTAACTATATATAAGTGAAAATTGGTATGCTTAAATGCAAAATTTGAGTTCAGTGCTTCACTAGTACATACAGTTATAGGCAAATGATGTTCAGCTTTATGAGACAATgctttaccaatgattacacaGATTAGTAAATAAAGCACATTACAAAAGGAG

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936232.2 True 727 mRNA 0.42 4 24013856 24016743

Neighbor

gene id symbol gene type direction distance location
mycb LOC108268289 coding upstream 363223 23648271 ~ 23650633 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding upstream 372387 23614440 ~ 23641469 (+)
otulinb LOC108268091 coding upstream 405655 23594961 ~ 23608201 (+)
stard3nl stard3nl,LOC107713985 coding upstream 612126 23392658 ~ 23401730 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding upstream 622855 23387009 ~ 23391001 (+)
LOC113540619 NA coding downstream 4322 24021065 ~ 24024165 (+)
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding downstream 104810 24121553 ~ 24127236 (+)
ccr9a LOC108267400 coding downstream 117933 24134676 ~ 24136808 (+)
LOC113540392 NA coding downstream 128339 24145082 ~ 24148968 (+)
si:dkey-154p10.3 LOC108267397,LOC107736657 coding downstream 145035 24161778 ~ 24170467 (+)
G69946 NA non-coding upstream 3996 24007703 ~ 24009860 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding upstream 70784 23940241 ~ 23943072 (+)
G69870 NA non-coding upstream 91160 23921800 ~ 23922696 (+)
G69736 NA non-coding upstream 156285 23855075 ~ 23857571 (+)
G69735 NA non-coding upstream 164342 23846645 ~ 23849514 (+)
G69966 NA non-coding downstream 66863 24083606 ~ 24084218 (+)
G69987 NA non-coding downstream 121892 24138635 ~ 24138888 (+)
G70129 ccdc24 non-coding downstream 549502 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 550257 24567000 ~ 24567318 (+)
G70134 NA non-coding downstream 553905 24570648 ~ 24570850 (+)
G69509 LOC108267411 other upstream 693513 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1361409 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2251555 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 2373699 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2689889 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 11363 24028106 ~ 24106223 (+)
G69971 NA other downstream 92052 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 842283 24859026 ~ 24871263 (+)
tnr tnr other downstream 1691084 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1880274 25897017 ~ 25902006 (+)

Expression


Co-expression Network