LOC113540054


Basic Information

Item Value
gene id LOC113540054
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30037408 ~ 30043011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936236.2
GAATTCCACCACTCTGGCAACCCAGATCCTTAACTAGCTTCATAATTGAAGAGGAGTGACTATGGTGAGCAACAAGTGCAACATTAGCGTAAAAAACTATTTTcgaagcaaaaataaaaagaaagggcTGCAAGATCCAACAAATGACTTCAGCATCATTCCATCATGGAACAAAGAGTTTGTGTACCTGATTGGTCTGGAAGAGGTGGTCCAGTTTCGCTTAGAGTGGCTGGACAAGACTGTATACACTGCGCCTAACAAACATAGAACCAGGGGGAGACCAAAGAAGTTTTCTATACCTGCTGTTGTGCCAGCAACTCTTCCCAAAGATCCATTCACCTGTGCGAAGTGCAACACTGATGTCTCTTGTTCATGGAAACCAGACGTGAACAGTTCCATCCTGTGTCACGCTTGTGTTAAGTGCAGTTGGAGGAAAGATCACTGGCTCTCTAGTGGACCAACAGAGACCATTATCAAATCAATTTCTGACAACTCTTCCAGTCTCAGTAAACCTGTGTGGAATGAGCCCCGGTCTATGAAAGAAGCTGTCTTCCCTTTGCAACATTCCTCTCATTCAGTCCCACAAGAGTGTGATCAGCAGGTCCCCAAGAACTCCTTATCTTCCTCTTCCAATTTTCACCCTGATTCACCTTTCTGTTGCTCCTCCCCTCTTTCCTCAGATCTTTCCTCCCCACCTGGATTTTACTCTGATACATCTTCCCAGTGgtcctcctccttttcctcaGATGACTACCCATGCCTTTATCATTCCTCATCCTCCCCTGGTTCTTCTCTTTGCGATGGCTCTTCACCTTCGTATCTCCCTTCTTACTCAGATCTTaactcttcttcttcatccATGTCCCCATCACCATCTGGTTCTCCACCAAAAAATTCAAGTAAGTGGGTCTCGCAGAAGGGTAAAACACCTTACTGGATGGAGTTTCCACTTACCAAGGCTTTACTTATAGATGACAAGGCTGAGCAAGAAAcgaagaaagagaaggaagaacAGTTGACAAGGAGCAAGTCACAATGCAAAGAAGAGAAGACTGGGAAGATGGCCGCCTTAAGTGTACCTTCATCATCATCGAATCAGCGGATCCTGCCAAAGACTCAACCTGCGCTCCCTGACTCGgttccatcatcatcaccattgcTCAGTGTTAGTAAACACCAATTTCAGACTCAGATATTAACATCAGATCTGCAGAAGACAAcaagtgcagaaaaaaacaaactgaccATGGAAGAAGGGTTGAAGCCTGGTGATGGCAGTTTACAAAAGATAACTCCTAATATGTCATGTGGTTACATTTCCTCAAAAAAATCAGGATCTTCTACCTACACCTTGGATTCTGAGAAGTCCAAGTCCACAATCCGCTATCTTCCCACAACTTGGTCAGCTGTCTCAGGCAGCGTAAGACAGCAAGATTCGAGGTCGATTCCAAGATGCTTTGATGATAATAAAAAAgagtccatcatgaagaacggAAAGTTTGGTACTAAGGTGCAACATCAGGTGTCCCATGCTCACCCCACTTCATCTCGGATCAGTTCAGCTCCTACACACGCGTCCTTCTTATCCCAAACTGCGTTGTCCTCCAACCAGGCAAAGGCCATCCCTCAGAATAAGGCGAAATGGGTAGCAGCTCCAAATCAGAAGATTGATAAATGGATTCAGAAGCCAGAATCCTCCATGGGGTCTCATGGCAGCTATTCATCCTggtcttctgcttcttcttcttcttcatttgaTCAACTGAGAAAGTGAACCAGCAGGTTCTGGTGTCACCGAAGATgaaaattttcattacaaagtTCAGGTCAACTCGTAACGGGAAGCCTTGCGACCCCAAGTGAGAGAAGGATGCAGTTAGGTTTCTTTAGCTTCCTGACCCTCTATCCTACCTTACCTTagccatttctttgttttgctgCCCCTTGAGCTCTCTTACAGAAATGCTGTCAAGTTCTATGCACTACAGGGTTCCAATTTGCTCTTTAAACACTCTGTTACTTTGCATCTTTCCAAGATGTTATAGAGCAAGGAGTGTCCACTCTTATCCGCAAATGGgcggtgtggctgcaggttttctttCCAAACAATCAAGAGCCACACCAAGTGCAGAACCTGCAGAACCTCCGCTGTGGCTTGTGGGttgtttggaatgaaaacctgcagccacaccagaGGTTCTGCAGGTTCTGTACCAGGTTTGTTTCATGATTGGTTTAGAACGCAAACCTGCATCCACACTGGTTCTTTTTGCGGCTAAGATTGGACACTCCGTGCTTAGAAGATCAATGTCTTCCTTCCAGGGTTGATTTGAAGTCCCTCTATTTGGAGAAGACAGGTTCATGAACATGTTTCATAAGTTTCAGATtataagtgtatttttttttgttcctctaTTTGTACtcaaaagtttgttttgttgcagtttatttattgttagaaATTATTTAATAGAAGGCAAACCTTTGCCTTGAAAAAAATGGTTTGgttaaaaaatacaagaatTACATTTTGTGACGTTTGGTTTATACATCTTCCGGTGATTATAGTACTGAGAACAAAGTAACTTAATTGATTGAATATTTGTTGTGGCATACAAGAAGTCAGTGTGTCATAACTTATATCAGTTTCAGTCagtaaatcaaaataaagcgTTCTTGTTTGTCGGAAGAATAAAAAGCAGCGTGCTACAAAATGCAAAGAGGCTAATGTTTTGATTCATTCTGTGGTTGTGAGTTGAGATCGGCGTtcctataatatataatgtgacAAGACACTTGACAATTGTGACTGCTGTTTCTAAaaccaccaataggaggacggtaTAGGATTACGCAAAACTCGCAAGATAACTACAAATATGGTATGGTGAAATGgcgaaatgtaaacaaaacatactAACAGACAGGATAAAAAGTATCTGTATTACTGCAAACTcactttgaaaaatgtttctgtttacacGACCGCTTTATATGCACAAAAGATGATATAAGCAGAACGTAGTCTTTAATCgtaggtctatcgttagaggatcttcatcgtataatctgacatggagaacgtTATCAGACGATCTGTTAGAATTCGTCTAAGGTTTTATTAGGATCTTGTACAACGTAGCGAGTAATTATCTTAAAAGACTGGCTTAGGTTTACAACGTAGGATGCTGATTAATATTCCTTACcttatatttaatgctaattCTTAGCTAATTAGTTTGCGGATTTTAGATTTGAGCATGTTTATATTGGGT
>XM_026936237.2
TCCTTTCCGCTCCGAAGTGAATTCCACCACTCTGGCAACCCAGATCCTTAACTAGCTTCATAATTGAAGAGGAGTGACTATGCAAGATCCAACAAATGACTTCAGCATCATTCCATCATGGAACAAAGAGTTTGTGTACCTGATTGGTCTGGAAGAGGTGGTCCAGTTTCGCTTAGAGTGGCTGGACAAGACTGTATACACTGCGCCTAACAAACATAGAACCAGGGGGAGACCAAAGAAGTTTTCTATACCTGCTGTTGTGCCAGCAACTCTTCCCAAAGATCCATTCACCTGTGCGAAGTGCAACACTGATGTCTCTTGTTCATGGAAACCAGACGTGAACAGTTCCATCCTGTGTCACGCTTGTGTTAAGTGCAGTTGGAGGAAAGATCACTGGCTCTCTAGTGGACCAACAGAGACCATTATCAAATCAATTTCTGACAACTCTTCCAGTCTCAGTAAACCTGTGTGGAATGAGCCCCGGTCTATGAAAGAAGCTGTCTTCCCTTTGCAACATTCCTCTCATTCAGTCCCACAAGAGTGTGATCAGCAGGTCCCCAAGAACTCCTTATCTTCCTCTTCCAATTTTCACCCTGATTCACCTTTCTGTTGCTCCTCCCCTCTTTCCTCAGATCTTTCCTCCCCACCTGGATTTTACTCTGATACATCTTCCCAGTGgtcctcctccttttcctcaGATGACTACCCATGCCTTTATCATTCCTCATCCTCCCCTGGTTCTTCTCTTTGCGATGGCTCTTCACCTTCGTATCTCCCTTCTTACTCAGATCTTaactcttcttcttcatccATGTCCCCATCACCATCTGGTTCTCCACCAAAAAATTCAAGTAAGTGGGTCTCGCAGAAGGGTAAAACACCTTACTGGATGGAGTTTCCACTTACCAAGGCTTTACTTATAGATGACAAGGCTGAGCAAGAAAcgaagaaagagaaggaagaacAGTTGACAAGGAGCAAGTCACAATGCAAAGAAGAGAAGACTGGGAAGATGGCCGCCTTAAGTGTACCTTCATCATCATCGAATCAGCGGATCCTGCCAAAGACTCAACCTGCGCTCCCTGACTCGgttccatcatcatcaccattgcTCAGTGTTAGTAAACACCAATTTCAGACTCAGATATTAACATCAGATCTGCAGAAGACAAcaagtgcagaaaaaaacaaactgaccATGGAAGAAGGGTTGAAGCCTGGTGATGGCAGTTTACAAAAGATAACTCCTAATATGTCATGTGGTTACATTTCCTCAAAAAAATCAGGATCTTCTACCTACACCTTGGATTCTGAGAAGTCCAAGTCCACAATCCGCTATCTTCCCACAACTTGGTCAGCTGTCTCAGGCAGCGTAAGACAGCAAGATTCGAGGTCGATTCCAAGATGCTTTGATGATAATAAAAAAgagtccatcatgaagaacggAAAGTTTGGTACTAAGGTGCAACATCAGGTGTCCCATGCTCACCCCACTTCATCTCGGATCAGTTCAGCTCCTACACACGCGTCCTTCTTATCCCAAACTGCGTTGTCCTCCAACCAGGCAAAGGCCATCCCTCAGAATAAGGCGAAATGGGTAGCAGCTCCAAATCAGAAGATTGATAAATGGATTCAGAAGCCAGAATCCTCCATGGGGTCTCATGGCAGCTATTCATCCTggtcttctgcttcttcttcttcttcatttgaTCAACTGAGAAAGTGAACCAGCAGGTTCTGGTGTCACCGAAGATgaaaattttcattacaaagtTCAGGTCAACTCGTAACGGGAAGCCTTGCGACCCCAAGTGAGAGAAGGATGCAGTTAGGTTTCTTTAGCTTCCTGACCCTCTATCCTACCTTACCTTagccatttctttgttttgctgCCCCTTGAGCTCTCTTACAGAAATGCTGTCAAGTTCTATGCACTACAGGGTTCCAATTTGCTCTTTAAACACTCTGTTACTTTGCATCTTTCCAAGATGTTATAGAGCAAGGAGTGTCCACTCTTATCCGCAAATGGgcggtgtggctgcaggttttctttCCAAACAATCAAGAGCCACACCAAGTGCAGAACCTGCAGAACCTCCGCTGTGGCTTGTGGGttgtttggaatgaaaacctgcagccacaccagaGGTTCTGCAGGTTCTGTACCAGGTTTGTTTCATGATTGGTTTAGAACGCAAACCTGCATCCACACTGGTTCTTTTTGCGGCTAAGATTGGACACTCCGTGCTTAGAAGATCAATGTCTTCCTTCCAGGGTTGATTTGAAGTCCCTCTATTTGGAGAAGACAGGTTCATGAACATGTTTCATAAGTTTCAGATtataagtgtatttttttttgttcctctaTTTGTACtcaaaagtttgttttgttgcagtttatttattgttagaaATTATTTAATAGAAGGCAAACCTTTGCCTTGAAAAAAATGGTTTGgttaaaaaatacaagaatTACATTTTGTGACGTTTGGTTTATACATCTTCCGGTGATTATAGTACTGAGAACAAAGTAACTTAATTGATTGAATATTTGTTGTGGCATACAAGAAGTCAGTGTGTCATAACTTATATCAGTTTCAGTCagtaaatcaaaataaagcgTTCTTGTTTGTCGGAAGAATAAAAAGCAGCGTGCTACAAAATGCAAAGAGGCTAATGTTTTGATTCATTCTGTGGTTGTGAGTTGAGATCGGCGTtcctataatatataatgtgacAAGACACTTGACAATTGTGACTGCTGTTTCTAAaaccaccaataggaggacggtaTAGGATTACGCAAAACTCGCAAGATAACTACAAATATGGTATGGTGAAATGgcgaaatgtaaacaaaacatactAACAGACAGGATAAAAAGTATCTGTATTACTGCAAACTcactttgaaaaatgtttctgtttacacGACCGCTTTATATGCACAAAAGATGATATAAGCAGAACGTAGTCTTTAATCgtaggtctatcgttagaggatcttcatcgtataatctgacatggagaacgtTATCAGACGATCTGTTAGAATTCGTCTAAGGTTTTATTAGGATCTTGTACAACGTAGCGAGTAATTATCTTAAAAGACTGGCTTAGGTTTACAACGTAGGATGCTGATTAATATTCCTTACcttatatttaatgctaattCTTAGCTAATTAGTTTGCGGATTTTAGATTTGAGCATGTTTATATTGGGT

Function

GO:

id name namespace
GO:0016769 transferase activity, transferring nitrogenous groups molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936236.2 True 3275 mRNA 0.42 3 30037408 30042993
XM_026936237.2 False 3227 mRNA 0.42 3 30037408 30043011

Neighbor

gene id symbol gene type direction distance location
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding downstream 342 30025069 ~ 30037066 (-)
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding downstream 22843 29903744 ~ 30014565 (-)
brinp3b LOC108267163 coding downstream 137882 29868591 ~ 29899526 (-)
rgs5b LOC108267191 coding downstream 202217 29833662 ~ 29835191 (-)
nos1apb LOC108267139 coding downstream 212267 29813527 ~ 29825141 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding upstream 7549 30050560 ~ 30056720 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding upstream 21039 30064050 ~ 30084861 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding upstream 169378 30212389 ~ 30223320 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding upstream 550695 30593706 ~ 30701045 (-)
LOC113540512 NA coding upstream 678021 30721032 ~ 30724657 (-)
G73618 NA non-coding downstream 12372 29976671 ~ 30025036 (-)
G73607 NA non-coding downstream 107919 29929264 ~ 29929489 (-)
G73492 NA non-coding downstream 190517 29846674 ~ 29846891 (-)
G73485 NA non-coding downstream 243764 29792212 ~ 29793644 (-)
G73481 NA non-coding downstream 257276 29778555 ~ 29780132 (-)
G73652 NA non-coding upstream 52779 30095790 ~ 30097973 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding upstream 58429 30101440 ~ 30102870 (-)
LOC113540631 NA non-coding upstream 85717 30128728 ~ 30138872 (-)
G73670 NA non-coding upstream 143885 30186896 ~ 30191121 (-)
G73684 NA non-coding upstream 152668 30195679 ~ 30197576 (-)
G73619 blvra other downstream 14883 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 306551 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 461681 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 865487 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1152443 28873578 ~ 28884965 (-)
LOC113540055 LOC108268301 other upstream 698516 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 730438 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1204049 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1827507 31870518 ~ 31871874 (-)
G74547 NA other upstream 1831298 31874309 ~ 31874827 (-)

Expression


Co-expression Network