LOC113540063 (LOC108267709)


Basic Information

Item Value
gene id LOC113540063
gene name LOC108267709
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31360647 ~ 31364271 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936251.2
ATGGATGAAAAAACAGCAAAGACTGCAGATCTCAGCTACACTGCACCCTCAGAAGTGGAGTGTGATGTGTGCACCGGAAGGAAGCGTAAAGCAGAGCAGTCCTGTTTGCAGTGTTTGGCTTCGTTCTGTGAAAACCATATAGATGTGCATAACATTCTGCACGTGGGGAAGAGACACAAGCTGGTGGCGGCTACGGGAAGCCTCAAACAGAGCGTCTGTCCTGAGCATGACAAACTCATGGAGGTTTTCTGCCGCAGAGATCAGCAGTGCATCTGCCACCTGTGCattacaaataaacacagaaatcacGATGTCGTCCTGATTGAAGATGAGGTGCCTGAGAAGAAGATTCAACTTGGGAAAATGCAAAGACAGACAACCAAGATGCTTCAGACCCGGGAGAAAGAGGAACAAGACTTAAAACAAGCTATTAATTCATTCAAGacttCAGCAGTGCAGGCAGTGGAGGAGAATGAGAAGAGCTTTACAGAGCTGATCCACTCCATTGAGATGATGCAGTGTGCAGTGAAGGAGCTGCTCTTGGCTCAGCAGGAGGCTGCCGTGAAGCAGGTTAATACACTGTTAGAGAGACTGGAACAGGAGATCACTGatctgaagagcagagatgcaGAACTCCAGCACCTGGAGCGGCTCTCTCAAGCAGACAATGACATCGATTTTCTACAGAACGCTTCTTCTGTTCCCCACCTCACAAAGTTCATCCAGATCCCAGCTCTAATAGTCCATCCATCCTGTCCATTTCAGCTTAGCGCTGCTGCTGTCTCAAATCTTCTCAAACAAGTGCACTTAATCTGCCAGTGGCGATTCATGACAATCTCTGAAAGAGtaAAAAACACTGGTATCGTATCCGCACCACTACCACAGACATACCAGGAGCTCTTACAATATGCAATCAAACTTACTCTGGATACAAATACGGTGCATGACAACCTCCAGCTGAGTAATCTGGACATGGAACTGACCGCCGTCCCAATGTCGGAGTACTATCCTTCCCATCCTGACAGATTTGAAAGGCGGCTGCAGGCCTTGTGCAGAGAAGGTCTGCGCGGTTCTCCGCgttactgggaggtggagtgCGGTACAAAAGGATCATGGGTTAATATCGCAGTCTCGTACAAAGGGATTAAAAGGAAAGGGAAACAGGCCCCTCTCTTTGGCAGATGCAGAAGCTCCTGGGCCTTGCGCAACTATGGGGGCATATACGAGTTCTGGCATGACAACAAGTGCCAGAAATCCTACACTGACAGATCTTTAGATTGTTCTAGAATAGGAATATATCTGGATCATGGAGCGGGGATTTTAGCCTTTTACAATGTCTCAGGTAACTTCAGCCTCATCTACAAGGCCCAGACGCAGTTTACAGAGCCTGTGTATGCTGGTTTTGGACTGGTAGGGATAGGCTCTCGTATCCGACTCTGTGATTTATAAGATTTAAAAGATCACCCTCTTTCTCAAAGAGAATGTCCTTATACCGGCTGCAGTTCAGATTTAAATGTTACTCTACgcatattattataattttacagGTCCTTAATTGTAT

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936251.2 True 1561 mRNA 0.47 6 31360647 31364271

Neighbor

gene id symbol gene type direction distance location
LOC113540523 LOC108267123 coding downstream 3675 31353902 ~ 31356972 (-)
carmil3 carmil3,LOC108268291 coding downstream 15663 31290821 ~ 31344984 (-)
LOC113540512 NA coding downstream 635990 30721032 ~ 30724657 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding downstream 659602 30593706 ~ 30701045 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 1137327 30212389 ~ 30223320 (-)
LOC113540461 LOC108267708,LOC107591395 coding upstream 15202 31379473 ~ 31502378 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding upstream 164099 31528370 ~ 31533258 (-)
LOC113540064 NA coding upstream 174268 31538539 ~ 31544634 (-)
nmnat2 nmnat2,LOC107658365,LOC107563562 coding upstream 345793 31710064 ~ 31727552 (-)
LOC117597140 NA coding upstream 1459287 32823558 ~ 32825567 (-)
G74256 NA non-coding downstream 49738 31236413 ~ 31310909 (-)
G74255 NA non-coding downstream 134059 31225234 ~ 31226588 (-)
G74060 NA non-coding downstream 244211 31056485 ~ 31116436 (-)
G74047 NA non-coding downstream 329267 31030389 ~ 31031380 (-)
LOC113540224 NA non-coding downstream 522537 30836352 ~ 30838110 (-)
G74417 NA non-coding upstream 202780 31567051 ~ 31650584 (-)
G74458 NA non-coding upstream 372021 31736292 ~ 31785757 (-)
G74479 NA non-coding upstream 380080 31744351 ~ 31745462 (-)
G74457 NA non-coding upstream 388850 31753121 ~ 31756304 (-)
LOC113540068 NA non-coding upstream 502811 31867082 ~ 31870008 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 83398 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 584828 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 609679 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1338122 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1629790 29724588 ~ 29730857 (-)
LOC117597010 NA other upstream 506247 31870518 ~ 31871874 (-)
G74547 NA other upstream 510038 31874309 ~ 31874827 (-)
G74550 NA other upstream 515763 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 518672 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 541355 31905626 ~ 31910974 (-)

Expression


Co-expression Network