rasl11a (rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967)


Basic Information

Item Value
gene id rasl11a
gene name rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13692777 ~ 13699690 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936262.2
GTTCATTTACGGGGAACTGTTCTGGTCCAATCTCCTTCTCCAAAGCTGAGGCATTGGCGCCCTGAAAAACACAGCCACAGGGGTTATTATCTCAGGCTCTCACACTCTCGCTCTTGCAGGTTACTACCAGACAGGACTGTCCTGTTAAGATGAACAGGAACATCCTGTTGGGGGAAGGCTCGACATTAACAGGATGCACATCCACTGGGAAACACTTGTTTAGCTCTAACAGAACACCTGCAAGCAGCACAGCAGCTCAAGAGGTAGACTTAAAGCACTGTTCTTTAGGTCTAAAAGGAAACAATGGCTGGTCATCTAATGTACAGCACAAAGCTTAAGTATAGCCTGAGGGTGTTCAAATATTGAAAGGGCCTGTGTGACTGACTGTGTGACACTGCCTGGAGTCTTGTCCTGATGTCAGCGACGCGGTTTGTGCAGGTGGTAAAGCCGAGTGATTTGTTATAAAGACGCACTGTTCCTACTCTTATCATTTTTCGATTTATACCAATATCAGAGCTGTGTGTACCAGCTGATACCTGATCCTGAACTGTTATTGACAACCAAACTGAGTCTCTACAAGCTTCTGTGAGAATCATCTCAGGCAAAGTGAATGTGCCAAACTGTGTCAGTCAACGGAGAATGCATTCATGGCACAAAACACGTCAGGAGACCAGAGCAGACAACATGTCACGTTGGTCGGATCTAAAACCACTGCAGCATTTCAGTCCAGTCCGGATGTTTCTGAGTTCCGGATGTGTCAGAGTGTTTCAGAGCAGTGTGCTTTGTCATGGGTGTCATCCGCCCCACTGCTCTCACGGCTCTGAGCTCAGCTCTCTCAGCTCTACTCTCTCAGCTCTACTCTCTCTGAGCTCTGCTCGCTTCGTGGAGAGGCTTTAAATGCAGGGGGATCCACACACGTAAACCCACCGCTGCACTGAGGAGACACACATTCAGCTTGTGATCACAAGATCCGGTTCTTTAGCTGTACGGATTACTGACATCACCAGTATTTGAGGAACAGACCCGGAGGAATAAAAGCGGCGAGGAAGCGCGAGCGGGAGTCgggagtgtggagtgtgtaccCCTGGACTGTCTCTCATTCAGAGGATTTGCCTTCATGAGGGCACAGTCATCGGCACTCGCATTATGAGAAAGACTTTGCAGAGTTTGGAGAACTGGGACAGGACTGTTTGGAAAAGTCTAGGATCTGCTATGAATTCGCAGGCACTCGGATGAAGTCGCCAGCTCTCTAAATGCGTCTTCCCGAGCAGCCGAGAACAATGAGCACCGGCTCTGGCAACTTTCTGCTAGTCCCCATACCAGAGTACCCAAGCCTGGACTGTGTGCCtaacaaaaatgtgaaaatagtCGTGCTTGGAGCTAGCAACGTCGGGAAAACAGCCTTAATAGTACGATTTCTGACCAAGAGGTTTATCGGTGATTACGAAGCCAACACAGGGGCCTTGTATTCAAGAAAGATAAATCTTGATGGGGAGCAGGTTTCTCTACAAGTGCAGGACACTCCCTGTGTCTCACTGCAGgATGACGTAGAGGGCCTGTACTGCCAGGAACAGATTAACCGCTCCATCTACTGGGCAGATGGCTACGTGCTGGTCTTTTCCATCACGGACATGCACAGCTACCGGACCATTCAACCGCTCTATGAGCATGTGCGTCGCATCCATCCAAGCGGCAACATCCCCATCATCCTTGTAGGCAACAAGAGCGACTTGCTGCGGGCACGCCAGGTACCTACAGACGAGGGCCAGGCCCTGGCAACCGATCTCGGAGGACAATATTTTGAGGCTTCTGCCCGGGAGAACCATGAGGGTGTGCAGGCAGCATTCTTGCACTTGTGCCAGGAGGTGAGCCGGGCACTGGGAGGGGTGAATGGTGAGAAGAGGAGGGGAGGACTGCACCTTGCTCGGCCGAAGAGTCCCAACATGCAGGAGCTGAAGAGAAGATTCCGGCAAGTGCTCTCTTCTAGAGGGAAATCAACAACTGCAGTGTGATGATAATGTAACGCCAGTGATTGATTCACAGGCCTGTTAGTGGAATCAGTATTGGCTGAGGAGTCAAAAGGTCAACCTTAATATGTATGCtaactttattttacactgcAGCATTGACTAGGGGAACAATAAACGTGTTGATTTTCATACAAAGACAACCTTTGCCTGGAAGAACACTAATATGTAGAATGATTTGATAATGATTTGTTATGATATACCATTACTGATGtatcataataatatattagtGGTAAATAAAGATACAAAGTTTCTTATATCTTTTTTGACAAATTGTGATTTTAGCCCATAACATTGTTACAGATGTTTCAAAAATACAGTGATAATGTGTGATGAATTGTGATGGCTAAGGAAATGGCCTGGGCTTGGTTTTTCATTATTGCTGTATGTAAGCTTTTAGACAAGTAGAGCTCTTAAACACCCTTAgatggaaaaatatttttgtactggGAATAACTGCTCATGAATTAGAGCAATTATTTTTGGTTATTTCTAAGTTATTTCTAAGTTACCCTGTCTGGCTGATATCCATATATAGGAAGGAGGACACGCATCTGGTGGTTCTCATGAACTTTAACCCACTCAGGCTGTGTGAAGCCAAAGCAGAGGTTGGgtgaatatttcatatttcattcactcattcctTTATTTATCCTTCCCAATTTGTAAGGGGGATTACAGCCTGAAGCTGCTTTCCTGTAAAGAAAATTCTGGAATGTGATATTCATTCACCGCAAACAGCCTTTGACCCCTAATCTTGTTCCTTTGAACTTTGACCTTGATTTTCCTGTTCTGATCAGAAGCAGATTTCATTGCAGTGTGTCTCGCTTTTCTGTCTGATACCTGttgtaaacaaagaaaatgttgtGTAAGTAAAAGTGACATTTTgatacattttgtattttaatttcttttccttaTTACAAAATTCCTTTGCATAATTGGAAACACACACCCTTGCACAGGCAATTCTTTCCcaattatagatttttttgcTGTTCACATTATATGAAGGCCTGTATGTAAACAGAACAGGGTTATAGAGGATTCCCTAATCATTTCCACATTTAAAAGATATTATGAGACTTAGGCTTTTCCTGCCCctgtatgtagtgttttttGCTCTGTGGGCTGTCTACTGGCACttagctgaaaaagaaaagcttcatttttattttcaaagttTTGACTGATTCTGGCTTACACTATGTGTATTATATGAAACATTCATAATCATGGCCCtcaaattaccaaaaaaaaaaaaaatcttttttgagGTCTGCAA
>XM_026936263.2
GTTCATTTACGGGGAACTGTTCTGGTCCAATCTCCTTCTCCAAAGCTGAGGCATTGGCGCCCTGAAAAACACAGCCACAGGGGTTATTATCTCAGGCTCTCACACTCTCGCTCTTGCAGGTTACTACCAGACAGGACTGTCCTGTTAAGATGAACAGGAACATCCTGTTGGGGGAAGGCTCGACATTAACAGGATGCACATCCACTGGGAAACACTTGTTTAGCTCTAACAGAACACCTGCAAGCAGCACAGCAGCTCAAGAGTCCAGTCCGGATGTTTCTGAGTTCCGGATGTGTCAGAGTGTTTCAGAGCAGTGTGCTTTGTCATGGGTGTCATCCGCCCCACTGCTCTCACGGCTCTGAGCTCAGCTCTCTCAGCTCTACTCTCTCAGCTCTACTCTCTCTGAGCTCTGCTCGCTTCGTGGAGAGGCTTTAAATGCAGGGGGATCCACACACGTAAACCCACCGCTGCACTGAGGAGACACACATTCAGCTTGTGATCACAAGATCCGGTTCTTTAGCTGTACGGATTACTGACATCACCAGTATTTGAGGAACAGACCCGGAGGAATAAAAGCGGCGAGGAAGCGCGAGCGGGAGTCgggagtgtggagtgtgtaccCCTGGACTGTCTCTCATTCAGAGGATTTGCCTTCATGAGGGCACAGTCATCGGCACTCGCATTATGAGAAAGACTTTGCAGAGTTTGGAGAACTGGGACAGGACTGTTTGGAAAAGTCTAGGATCTGCTATGAATTCGCAGGCACTCGGATGAAGTCGCCAGCTCTCTAAATGCGTCTTCCCGAGCAGCCGAGAACAATGAGCACCGGCTCTGGCAACTTTCTGCTAGTCCCCATACCAGAGTACCCAAGCCTGGACTGTGTGCCtaacaaaaatgtgaaaatagtCGTGCTTGGAGCTAGCAACGTCGGGAAAACAGCCTTAATAGTACGATTTCTGACCAAGAGGTTTATCGGTGATTACGAAGCCAACACAGGGGCCTTGTATTCAAGAAAGATAAATCTTGATGGGGAGCAGGTTTCTCTACAAGTGCAGGACACTCCCTGTGTCTCACTGCAGgATGACGTAGAGGGCCTGTACTGCCAGGAACAGATTAACCGCTCCATCTACTGGGCAGATGGCTACGTGCTGGTCTTTTCCATCACGGACATGCACAGCTACCGGACCATTCAACCGCTCTATGAGCATGTGCGTCGCATCCATCCAAGCGGCAACATCCCCATCATCCTTGTAGGCAACAAGAGCGACTTGCTGCGGGCACGCCAGGTACCTACAGACGAGGGCCAGGCCCTGGCAACCGATCTCGGAGGACAATATTTTGAGGCTTCTGCCCGGGAGAACCATGAGGGTGTGCAGGCAGCATTCTTGCACTTGTGCCAGGAGGTGAGCCGGGCACTGGGAGGGGTGAATGGTGAGAAGAGGAGGGGAGGACTGCACCTTGCTCGGCCGAAGAGTCCCAACATGCAGGAGCTGAAGAGAAGATTCCGGCAAGTGCTCTCTTCTAGAGGGAAATCAACAACTGCAGTGTGATGATAATGTAACGCCAGTGATTGATTCACAGGCCTGTTAGTGGAATCAGTATTGGCTGAGGAGTCAAAAGGTCAACCTTAATATGTATGCtaactttattttacactgcAGCATTGACTAGGGGAACAATAAACGTGTTGATTTTCATACAAAGACAACCTTTGCCTGGAAGAACACTAATATGTAGAATGATTTGATAATGATTTGTTATGATATACCATTACTGATGtatcataataatatattagtGGTAAATAAAGATACAAAGTTTCTTATATCTTTTTTGACAAATTGTGATTTTAGCCCATAACATTGTTACAGATGTTTCAAAAATACAGTGATAATGTGTGATGAATTGTGATGGCTAAGGAAATGGCCTGGGCTTGGTTTTTCATTATTGCTGTATGTAAGCTTTTAGACAAGTAGAGCTCTTAAACACCCTTAgatggaaaaatatttttgtactggGAATAACTGCTCATGAATTAGAGCAATTATTTTTGGTTATTTCTAAGTTATTTCTAAGTTACCCTGTCTGGCTGATATCCATATATAGGAAGGAGGACACGCATCTGGTGGTTCTCATGAACTTTAACCCACTCAGGCTGTGTGAAGCCAAAGCAGAGGTTGGgtgaatatttcatatttcattcactcattcctTTATTTATCCTTCCCAATTTGTAAGGGGGATTACAGCCTGAAGCTGCTTTCCTGTAAAGAAAATTCTGGAATGTGATATTCATTCACCGCAAACAGCCTTTGACCCCTAATCTTGTTCCTTTGAACTTTGACCTTGATTTTCCTGTTCTGATCAGAAGCAGATTTCATTGCAGTGTGTCTCGCTTTTCTGTCTGATACCTGttgtaaacaaagaaaatgttgtGTAAGTAAAAGTGACATTTTgatacattttgtattttaatttcttttccttaTTACAAAATTCCTTTGCATAATTGGAAACACACACCCTTGCACAGGCAATTCTTTCCcaattatagatttttttgcTGTTCACATTATATGAAGGCCTGTATGTAAACAGAACAGGGTTATAGAGGATTCCCTAATCATTTCCACATTTAAAAGATATTATGAGACTTAGGCTTTTCCTGCCCctgtatgtagtgttttttGCTCTGTGGGCTGTCTACTGGCACttagctgaaaaagaaaagcttcatttttattttcaaagttTTGACTGATTCTGGCTTACACTATGTGTATTATATGAAACATTCATAATCATGGCCCtcaaattaccaaaaaaaaaaaaaatcttttttgagGTCTGCAA

Function

symbol description
rasl11a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in positive regulation of transcription by RNA polymerase I. Predicted to act upstream of or within signal transduction. Predicted to be located in nucleolus. Is expressed in several structures, including anterior axial hypoblast; head mesenchyme; musculature system; polster; and spinal cord. Orthologous to human RASL11A (RAS like family 11 member A).

NR:

description
PREDICTED: ras-like protein family member 11A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0045943 positive regulation of transcription by RNA polymerase I biological_process
GO:0016020 membrane cellular_component
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07852 RASL11A; Ras-like protein family member 11A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936262.2 True 3315 mRNA 0.44 5 13692777 13699690
XM_026936263.2 False 2853 mRNA 0.44 5 13692777 13699690

Neighbor

gene id symbol gene type direction distance location
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding upstream 8178 13647181 ~ 13684599 (+)
nhsl2 nhsl2 coding upstream 46793 13573634 ~ 13645984 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding upstream 123178 13564728 ~ 13569599 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding upstream 138829 13533817 ~ 13553948 (+)
si:dkey-33c9.6 LOC108267836 coding upstream 191944 13486536 ~ 13500833 (+)
LOC113540276 LOC108267420 coding downstream 24624 13724314 ~ 13738910 (+)
col4a6 col4a6,LOC108267418 coding downstream 98490 13798180 ~ 13880674 (+)
ankrd46b ankrd46,ankrd46b,LOC108428588 coding downstream 182622 13882312 ~ 13889584 (+)
LOC113539767 t185a,tmem185a coding downstream 191423 13891113 ~ 13898505 (+)
m1ap m1ap coding downstream 274306 13973996 ~ 14016125 (+)
G63976 NA non-coding upstream 119944 13570002 ~ 13572833 (+)
G63936 NA non-coding upstream 188058 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 225051 13459362 ~ 13467726 (+)
G63901 NA non-coding upstream 275336 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 304823 13387598 ~ 13387954 (+)
G64025 NA non-coding downstream 55854 13755544 ~ 13759751 (+)
G64049 NA non-coding downstream 203751 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 312408 14012098 ~ 14012315 (+)
G64103 NA non-coding downstream 313529 14013219 ~ 14013418 (+)
G64105 NA non-coding downstream 317596 14017286 ~ 14017669 (+)
cited1 cited1 other upstream 130511 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 217740 13468552 ~ 13475037 (+)
G63903 NA other upstream 274081 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 406943 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 472918 13206657 ~ 13219859 (+)
gc2 LOC108267421,LOC108412585 other downstream 5727 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 556054 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 932340 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2323504 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2610523 16310213 ~ 16319166 (+)

Expression


Co-expression Network