LOC113540073


Basic Information

Item Value
gene id LOC113540073
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29554015 ~ 29559125 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936268.2
GATAACAAAACCCCTAAGAATGCTTCCTAACAAAGTTATTAGAGAAACTGACTTagaaacactacacacactcatacccaCATACCTTAGTCAGGAGTAAGAGCATCAGCAGAAAACATGTTGCTCTTAAGCCTTTTTGTTGGGGTGATTATTTTTACAGCTGGAGCAACTGCTCAAACAACCATTACAAGtcccactactactactactactacaactactactactactcctcctactcctcctcctactactactactactacaacaccTCATACAACTACACTTTTGGACACTATGATACCCAAAACAACTACACAAAtgaccaccaacaccaccacaaggACCACTACTAAAGCTACAACACCGTTTCAGATGTTTGTAACAGGCGGCTCAGGGCCCTTGTTTCCTTCTCCAGTGACCACACCCAGTCCTCGTCCTGAAACCAGTACCAAAACAACGGCTCACTCGTACCCCGTGGTTGCCGGGCTGCGAGCTTTGGTCAGAACTAGTGTGGCGCTGGATATCAATCAAGCCAACTCCATTTTGCAGCAGTATTTATCATATCTCCAATCATACTACAACGTAACTGCCAGAGTAACGAGCATTAAGAAGGTATGAAGAGCTGCATCAGAAGGAAGTTCAGGATATTTTCAAGGCCCTTgttcctctttttatttctttgagaaaatgtgcattattgtaatctctttcactttttcaaatcattgcttttgcattttttcGAGATTATACTTTAAAGGTATATTGACAATTTGTGGGAGGCAAGTAAAGGTAACTGTGCTTGacagtaaataattataatatgatTTGTCAACAGTGAATGAAGCAACAATgttaattcaaataaatgaattaataaaacctGTTCAGTGAGAAAAGTga
>XM_026936269.2
ACCCCTAAGAATGCTTCCTAACAAAGTTATTAGAGAAACTGACTTagaaacactacacacactcatacccaCATACCTTAGTCAGGAGTAAGAGCATCAGCAGAAAACATGTTGCTCTTAAGCCTTTTTGTTGGGGTGATTATTTTTACAGCTGGAGCAACTGCTCAAACAACCATTACAAGtcccactactactactactactacaactactactactactcctcctactcctcctcctactactactactactacaacaccTCATACAACTACACTTTTGGACACTATGATACCCAAAACAACTACACAAAtgaccaccaacaccaccacaaggACCACTACTAAAGCTACAACACCGTTTCAGACGTACCCCGTGGTTGCCGGGCTGCGAGCTTTGGTCAGAACTAGTGTGGCGCTGGATATCAATCAAGCCAACTCCATTTTGCAGCAGTATTTATCATATCTCCAATCATACTACAACGTAACTGCCAGAGTAACGAGCATTAAGAAGGTATGAAGAGCTGCATCAGAAGGAAGTTCAGGATATTTTCAAGGCCCTTgttcctctttttatttctttgagaaaatgtgcattattgtaatctctttcactttttcaaatcattgcttttgcattttttcGAGATTATACTTTAAAGGTATATTGACAATTTGTGGGAGGCAAGTAAAGGTAACTGTGCTTGacagtaaataattataatatgatTTGTCAACAGTGAATGAAGCAACAATgttaattcaaataaatgaattaataaaacctGTTCAGTGAGAAAAGTga
>XM_034303451.1
TATCCtttcagtttttaaagaaacattccTGTATGTAGAACAATACTTTAACTATGGGCGGAGTTTAGCGCAGTTGATTTACTGGAACTGCTGGTATTGTACGTCACCAAGTGTGACGCTTGATAACAAAACCCCTAAGAATGCTTCCTAACAAAGTTATTAGAGAAACTGACTTagaaacactacacacactcatacccaCATACCTTAGTCAGGAGTAAGAGCATCAGCAGAAAACATGTTGCTCTTAAGCCTTTTTGTTGGGGTGATTATTTTTACAGCTGGAGCAACTGCTACACTTTTGGACACTATGATACCCAAAACAACTACACAAAtgaccaccaacaccaccacaaggACCACTACTAAAGCTACAACACCGTTTCAGATGTTTGTAACAGGCGGCTCAGGGCCCTTGTTTCCTTCTCCAGTGACCACACCCAGTCCTCGTCCTGAAACCAGTACCAAAACAACGGCTCACTCGTACCCCGTGGTTGCCGGGCTGCGAGCTTTGGTCAGAACTAGTGTGGCGCTGGATATCAATCAAGCCAACTCCATTTTGCAGCAGTATTTATCATATCTCCAATCATACTACAACGTAACTGCCAGAGTAACGAGCATTAAGAAGGTATGAAGAGCTGCATCAGAAGGAAGTTCAGGATATTTTCAAGGCCCTTgttcctctttttatttctttgagaaaatgtgcattattgtaatctctttcactttttcaaatcattgcttttgcattttttcGAGATTATACTTTAAAGGTATATTGACAATTTGTGGGAGGCAAGTAAAGGTAACTGTGCTTGacagtaaataattataatatgatTTGTCAACAGTGAATGAAGCAACAATgttaattcaaataaatgaattaataaaacctGTTCAGTGAGAAAAGTga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936268.2 False 906 mRNA 0.40 6 29554136 29559125
XM_026936269.2 False 804 mRNA 0.38 5 29554145 29559125
XM_034303451.1 True 919 mRNA 0.39 5 29554015 29559125

Neighbor

gene id symbol gene type direction distance location
ccdc39 ccdc39 coding upstream 468 29541983 ~ 29553547 (+)
dcun1d1 dcun1d1,LOC107568628,LOC107722250,LOC107681826,LOC105889496,LOC107708830,LOC103032878 coding upstream 14000 29534634 ~ 29540015 (+)
b3gnt5b b3gnt5 coding upstream 40236 29500475 ~ 29513779 (+)
tbl1xr1b tbl1xr1b,LOC108267995,LOC108437519,LOC103032574,LOC107656866,LOC103359463,LOC107568629 coding upstream 57430 29481242 ~ 29496585 (+)
LOC113540045 LOC108267996 coding upstream 94720 29455551 ~ 29459295 (+)
LOC113540482 LOC108267690 coding downstream 37341 29596466 ~ 29602830 (+)
rc3h1b LOC108267889,LOC108437509,LOC107681708 coding downstream 145363 29704488 ~ 29720768 (+)
LOC113539887 dbt,LOC108267843,LOC108411488 coding downstream 192946 29752071 ~ 29760972 (+)
rgs18 LOC108268317,LOC108428888 coding downstream 408546 29967671 ~ 29976291 (+)
rgs1 LOC108267137 coding downstream 427060 29986185 ~ 29989435 (+)
G73092 NA non-coding upstream 12580 29541095 ~ 29541435 (+)
G73089 NA non-coding upstream 27097 29526202 ~ 29526918 (+)
G73088 NA non-coding upstream 29179 29524298 ~ 29524836 (+)
G73072 NA non-coding upstream 29773 29483262 ~ 29524242 (+)
G73118 NA non-coding downstream 70468 29629593 ~ 29629823 (+)
G73151 NA non-coding downstream 153345 29712470 ~ 29712682 (+)
G73154 NA non-coding downstream 159337 29718462 ~ 29719317 (+)
G73123 NA non-coding downstream 162941 29722066 ~ 29723750 (+)
G73155 NA non-coding downstream 173526 29732651 ~ 29733363 (+)
fubp1 fubp1 other upstream 357866 29181767 ~ 29196149 (+)
G72873 NA other upstream 641911 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 756856 28792847 ~ 28797159 (+)
gng5 NA other upstream 792564 28758545 ~ 28761451 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 1215842 28316404 ~ 28338173 (+)
asip2b NA other downstream 60868 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 114389 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 895632 30454757 ~ 30478293 (+)
G73944 NA other downstream 1187006 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1502605 31061730 ~ 31097929 (+)

Expression


Co-expression Network