march6 (march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076)


Basic Information

Item Value
gene id march6
gene name march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22504804 ~ 22525766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936302.2
TGTACGTGTAGCCCGTAGAGGCCGCTGCTCGGCGCTGGGCTGTTTGTGGCATGGTGATGGAGGCAGTAGTGTGCTGTCGACTTGTGATAGGAAGACTGACATCTTATTAAACACAGTTTGCCGGTGTCTGAGGGGTGCAACACAAAAACAACCCGTCAGTGGTGTTATGCGGAGTTCGTGGCTGTTGTTCTTGcgagatgtttttctttaaatgtgcgAGCCGCGGCTGCTGAACAGTGTTATGTGTTGACTGAAGGAGGACAGTGCGTCACGGCTAGCTATAAGATGGACACTGGAGAAGAAGCTGATATATGTCGAGTGTGTCGCTCTGAGGGAACTCAGGACAAACCCCTCTACCATCCTTGTGTCTGCACTGGAAGTATTAAATTCATTCACCAAGAATGCTTGGTGCAGTGGCTGAAACACAGCAGAAAAGAGTATTGCGAATTATGCAAGCACAGATTTGCTTTCACGCCAATTTACTCTCCAGACATGCCTTCACGGCTTCCAGTACAGGACATTTTTGCAGGTCTGGTGACCAGTATAGGCACTGCCATCCGATACTGGTTCCATTATACGCTGGTGGCCTTTGCCTGGCTGGGAGTTGTACCTTTAACAGCATGTCGAATCTATAAGTGTCTGTTTACTGGTTCTGTAAGCTCCCTCCTGACGCTGCCATTAGATATGCTTTCCACGGAGAACCTGCTGGCGGACTGTCTGCAGGGCTGCTTCGTGGTGACCTGCACCCTCTGCGCCTTTATAAGCCTGGTGTGGTTACGGGAGCAGATTGTTCATGGTGGAGCTCCACTGTGGTTGGAGCAGAACCAACAGCAACCTGCCAACGCAGCAGGGCAGCCTAAtgagGCTCCAGCTGCGGGTAATGGAGGTGTGGAGAATCAGCCTGCGCCGGCCCCGGCTGATCCCCCTGCAGAGAACGCAGCAGCAGCTGAGGTGCTCGACGCCCAACCTGACCAAGCCgaggagctggagctggacaacgaggatgaggaggaggcgGGTGCTGAGGACGCAGCTGATGCCAATAATGGTGCACAAGATGATATGAACTGGAATGCTTTGGAATGGGACCGTGCTGCTGAGGAGCTCACATGGGAAAGGATGCTTGGTCTTGATGGCTCTCTGGTTTTCCTGGAGCATGTATTCTGGGTGGTGTCTCTCAATACACTCTTCATTCTGGTGTTTGCTTTTTGTCCATACCATATTGGGCACTTTTCAGTGGTGGGACTTGGCTTTGAAGATTATGTTCGTGCTTCTCACTTCGAGGGCCTCATCACCACCATTGTTGGTTACGTCCTGTTGGCAGTAACACTCATTGTGTGCCATgGATTAGCTGCACTGGTTCGATTCCAAAGATCGCGGAGATTGTTAGGAGTCTGCTATATTGTGGTTAAGGTGTCGTTGTTGGTGGTTGTAGAGATCGGTGTATTCCCTCTCATCTGTGGCTGGTGGCTGGATATCTGCTCTCTGgaAATGTTTGACGCATCCCTAAAGGACAGAGAACTAAGTTTTGAGTCGGCTCCAGGCACCACCATGTTTCTGCACTGGCTTGTAGGCATGGTCTACGTCTTCTACTTTGCATCCTTTATCCTCCTGCTCCGAGAGGTTCTCAGGCCTGGAGTCTTGTGGTTTCTCAGAAACCTTAATGATCCAGATTTTAACCCAGTCCAAGAAATGATCCACCTTCCGATATACAGACATCTGAGACGATTCATACTATCAGTGGTTGTGTTTGGGTCGATAGTCCTGTTGATGCTCTGGTTACCCATTCGGATAATTAAACACATCTTGCCAGCCTTCCTTCCCTACAACGTGATGCTCTACAGTGATGCTCCAGTGAGTGAGCTGTCCCTAGAGCTCCTGTTGCTGCAGGTGGTTTTGCCGGCTCTGTTGGAGCAGGGACACACACGGCAGTGGCTGAAGGGTTTGGTGAGAGCCTGGACAGTCACCGCTGGCTACTTActAGACCTACATTCGTATCTTCTGGGAGACCAGGAGGAGAATGACAACAACGCCAACCAGGcagccaacaacaacaacaaccagcaACCACGAAACAATGCTAATGCCATTCCTGTAGTGGGCGAAGGCCTACATGCGGCACACCAGGCCATCCTGCAACAAGGAGGCCCTGTGGGCTTCCAGCCCTACCACCGCCCTGTGAAGTTCCCCCTCAGGATTGTGCTGCTGATCCTTTTCATGTGTGTGACGCTGCTCTTGGCCAGCTTGGTGTGTCTCACTTTGCCAGTGTTTGCTGGCCGCTGGCTCATGTCGTTCTGGACTGGCACAGCTAAGATCCACGAGCTGTACACCGCAGCATGTGGCCTGTATGTGTGCTGGCTGTCCATCAGGGCCGTCACTGTGCTGCTAGCCTGGATGCCTCAGGGCCGCAGGGTCATCCTCCTCAAAGTCCAGGAGTGGACACTCATGatCATGAAGACTCTGATCGTGGCAGTTCTGTTAGCTGGTGTGATTCCGCTGCTTCTGGGTTTGCTGTTTGAGTTGGTTATCGTGGCTCCTCTCCGGGTCCCGCTCGACCAGACACCTCTGTTCTACCCCTGGCAGGATTGGGCTTTGGGAGTGTTACATGCCAAAATAATCGCCGCCATCACCCTGATGGGCCCTCAGTGGTGGCTGAAGACTGTCATTGAGCAGGTGTATGCCAATGGAATCCGCAACATTGATCTACATTTCATCATCCGTAAGCTGGCTGCTCCTGTCATCgctgtgctgctgctgtctctctgtgtgccCTACGTCATTGCTGTAGGCATCGTCCCGATAATAGGCGTTACCCTGGAGATGCAGAACCTGGTTCAGAGGAGAATCTACCCCTTCCTGCTGATGGTCGTGGTTCTGATGGGAATCCTCTCTTTCCAAATCCGACAGTTCAAGCGCCTTTACGAACACATCAAGAATGACAAGTATCTCGTAGGACAGAGACTTGTGAACTATGAACGTAAAGCTGGTAAACCCAGTACGACTACACACAGCAGCTCAGTGCAGGAATAAAAGCTTTGGGACACGTGCTCGTGTTTGACgaagagtgtgtatgtgttcagatCTGGCCCCTTCCCCTctgttgtgcgtgtgtgtttgtgtccatCATTTCTCATGTCCAGTCCAAAATTCAAGAACTCTCAGTTACTCTGATTTTGCCTGCAACTTGAGAACTGAAATGTTTATAAACCTacaaaaaagagcaagaaattCTTCAAGCCAACCAACCTGGATTTAAAAGTGTCACTGTacatctttgaaaaaaaaaaaatgagtatgtatattaatttattaaatctaGTTGTCACTTTACTTTGTGGAATCCTGTTGCTTGGTCAGTACCGATGCCGGTGTAGTGCTCTCCAGTCCTGAGGACGGCGACGGCGTTTGGGGCTGAGAACGCACTCAGACATGCGCATCTGAGCACTCAGCTGTAATATTAgaagccttttatttatttgatttctaAGAGGTATGTCATAGCGTTTGTTAATTACAGGTTCTCACCTGAGCTGAAGCTGTCAGCTCCTGATTGTTTTAATCTCTAACAATGTAGAGGACGTGGCTGGAGTGTGGATTTGAGGCTCAGATCTCAGAAGACAAACCAATCCAGCACCTCATGGGACTCTTTTATGCGGAACATTGGGGAAGTTGGGACAGGACAGGCAGCATTAATTTTACTGAAGCATGTCGTGTGGGCACGGAAACTGCACCGTGGAGTCGGACAGTAGTGTTTACGGCTCACGGTGAGATATGACGCTTACGTTGGGCCTTGGTTCTCTGTCCAGTTCTGAAACTCTCCATCCTTCCTGATAACCCAAGAGACTGTCTTGTGTGCTGATTGCCTCAGTGGCTAGAATAGCATGAGTTTCCTGTCAATGTTATAAAGTGTCGAATATTGTGGGTCTTGTACTTCACCACCTTACTGACTTTACTGTACATGAATGATGTGCTTCAGAAAATCTTGAAATGTCTTAACAGCAATAGGTTGGAGGTCTGTTCAGATAGTGAATCAGTGTTCATATGATTCCACCTCAATCCATCAAACTGGTATGAATTTTTCTCAAgatcagtaaatgctttatgaTGTGGGAAGACTGATCCAGTTTGGTAGAACAAAATCATTTTGTGTCTATATTCCAAAAGAGTTCCTAACAGTTTGTACATAATGTAAATTTTACAATACTGACGGATCACATTTTGTAGCGAAGTCATTTCTTCATGTCTGCCACAAAACTGCCCTCAGAATTAACCGAACCTGGATACTGTAGGCTTCTCAATATTGTTTGGGCTccttttaaaagcaaaatgtttctatttttatatgTGCGTGTAGTGACTGGCTGGTTCTCGATCACGCATGGCTCGCCTGCTTTCTGAGTTTCTCACAAAGTTTCCTTCAGAAGCAAGGCGACTGCGTGGAGCTGTGGCGCTGTGTAGGATGCAGGCGGCATGCTGGTACAGTACTAATGACTCTCACACGTCAGGTCAGCGCAACCTTGTCCTATCCGTAGCATGTTCGTGTGAGATGTATTCAGTATTCTGAATGTTTTAAAACCTCCTGCTAGGAGGCTGTGGCTGTAATTACATCCTTATACAGGCAGAcgagtacttttttttttgggtgtttgttggaaaattttattacaaatattaaatcAAAAGTGTGATACA

Function

symbol description
march6 Predicted to enable zinc ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH6

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936302.2 True 4692 mRNA 0.48 26 22504804 22525766

Neighbor

gene id symbol gene type direction distance location
atpsckmt fam173b coding upstream 2943 22497558 ~ 22501861 (+)
LOC113539999 LOC108267232,LOC108440662 coding upstream 9694 22484285 ~ 22495110 (+)
kif9 kif9 coding upstream 122737 22367730 ~ 22382067 (+)
LOC117597114 NA coding upstream 140346 22363682 ~ 22364458 (+)
ncf2 ncf2 coding upstream 166428 22329268 ~ 22338376 (+)
ankrd33bb LOC108268146 coding downstream 13052 22538818 ~ 22544587 (+)
si:dkey-94e7.2 si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344 coding downstream 115976 22641742 ~ 22646438 (+)
tcea1 tcea1 coding downstream 144723 22670489 ~ 22677200 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 177213 22702979 ~ 22737767 (+)
oprk1 oprk1,LOC108268135,LOC107664042,LOC107732559,LOC108440658,LOC107586336,LOC107558938 coding downstream 224099 22749865 ~ 22757329 (+)
G68954 scrib non-coding upstream 107703 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 117059 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 259979 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 587028 21914806 ~ 21917776 (+)
G68621 NA non-coding upstream 755485 21732946 ~ 21749319 (+)
G68999 NA non-coding downstream 1562 22527328 ~ 22527556 (+)
LOC113540593 NA non-coding downstream 401044 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 476232 23001998 ~ 23004102 (+)
G69443 NA non-coding downstream 758788 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 765644 23291410 ~ 23291998 (+)
LOC113540377 NA other upstream 742503 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 864647 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1180837 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1471051 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 2350027 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 124044 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 792738 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1502340 24028106 ~ 24106223 (+)
G69971 NA other downstream 1583029 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2333260 24859026 ~ 24871263 (+)

Expression


Co-expression Network