atpsckmt (fam173b)


Basic Information

Item Value
gene id atpsckmt
gene name fam173b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22497558 ~ 22501861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936303.2
GCTTTGCTGTAGCATATCGGAAGACATTCAGCCACACACATTTAGGCTCGTGCTTGAAAGTTTTCCTTCTTGAAATGATTCTTACTCATCATACACCTTTATATAAACCATAACTCATGTAAGTTGTGTATGATATGTTGCTGTAAGATCTGTTTGGCTGAACCCAAATGGCTTCCTGCTGCCTATGTAGGTGCACTACATCAGGTACGCAGTAACGGCACATACAGCCCATTTAGTGCACTTTAAGAAGCCATTTGGGAGTTAGCCACTGGCTCGAACAGAGGTCATCTGCAATGTGTGATTTAGGGCTAGAGCTTGAAAAGGGGGCAGCTCAGGAAGAATCCAGCAGCAGGAGCATTAAAAAGCGTGTAGGGCTCATTGCTACTTGTGCACTCGGAGGCTCGCTGGTCGCTTTATACGCTGGAGCTGGACCTTTCGTTGCTCCGGCGCTCAGGAAGATTTGCCTCCCGTTCGTCCCTGCTACAAACACTCAGGTCAAAAACGTCCTCAGCGTTCTGCAGTCAAGATCGGGGACCCTTGTGGACATTGGAAGTGGTGATGGACGGATAGTTATAGCTGCAGCTAGAGAGGGTTTCAGGTCTGTCGGCATTGAGCTAAATCCATGGTTGGTGTGGTATTCCCGTTACAAAGCATGGAGACAAGGGGTTCATCGCCACACCTCTTTTTATATCTCTGACCTGTGGAAGGTCAGTTTTTCACAGTACTCTAATGTCGTCATATTTGGAGTTCCACAAATGATGGAGCAGCTGGAAGCCAAGCTTCAGGCGGAGCTCGAGTCCCCAGCTCGAGTGGTGGCCTGCCGTTTCCCCTTCCCCACATGGACTCCCGATCACGTGACCGGAGAGGGAATTGACACCGTGTGGGTATACGATGCCAAGACTTTCAAATCTCACACAACAACAGCAAAGCTGCTGAACAGCAGTGAGGACAAGAATCATCTATGATGaagtcaaattaaattaaaaagactGTACTTATGCAACTGTTTTATGCTAACTGGTTATTGAGATGTATTGTTTATCCTGGTTTTAATTTCAAACCTTCTACAGtaacaaatgtaataaaaatacatctttCTTGTCATTTA

Function

NR:

description
protein FAM173B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936303.2 True 1108 mRNA 0.46 4 22497558 22501861

Neighbor

gene id symbol gene type direction distance location
LOC113539999 LOC108267232,LOC108440662 coding upstream 2448 22484285 ~ 22495110 (+)
kif9 kif9 coding upstream 115491 22367730 ~ 22382067 (+)
LOC117597114 NA coding upstream 133100 22363682 ~ 22364458 (+)
ncf2 ncf2 coding upstream 159182 22329268 ~ 22338376 (+)
prkdc prkdc,LOC107598697,LOC103399435 coding upstream 180267 22272475 ~ 22317291 (+)
march6 march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076 coding downstream 2943 22504804 ~ 22525766 (+)
ankrd33bb LOC108268146 coding downstream 36957 22538818 ~ 22544587 (+)
si:dkey-94e7.2 si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344 coding downstream 139881 22641742 ~ 22646438 (+)
tcea1 tcea1 coding downstream 168628 22670489 ~ 22677200 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 201118 22702979 ~ 22737767 (+)
G68954 scrib non-coding upstream 100457 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 109813 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 252733 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 579782 21914806 ~ 21917776 (+)
G68621 NA non-coding upstream 748239 21732946 ~ 21749319 (+)
G68999 NA non-coding downstream 25467 22527328 ~ 22527556 (+)
LOC113540593 NA non-coding downstream 424949 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 500137 23001998 ~ 23004102 (+)
G69443 NA non-coding downstream 782693 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 789549 23291410 ~ 23291998 (+)
LOC113540377 NA other upstream 735257 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 857401 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1173591 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1463805 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 2342781 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 147949 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 816643 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1526245 24028106 ~ 24106223 (+)
G69971 NA other downstream 1606934 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2357165 24859026 ~ 24871263 (+)

Expression


Co-expression Network