rgs13 (LOC108268340)


Basic Information

Item Value
gene id rgs13
gene name LOC108268340
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29998504 ~ 30001345 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936317.2
GTTGCATCCTCTCTTGCTTTCAGATCCTGTGGTAACCAGCTAACGGTagcccaaacacaaacacacctaaGTGCTAAAAACACATCCGCGCGAACATGCCGAGCTTGCCACGAACCACAAAAGAACTGGACAATATGACCAAGGAAGAGAAGCCACCACAATCTCAGAGGAATGACATCAAGTGGCGGCTTCAGTGCAAGCTCATGAGAAGCCCAATGTCAGAGAAACTTAAACCTGGGGAGAGCCTGCTCTGGTCACAATCTCTAGAAACTCTTCTTAGATCAAAATCTGGTAAAACAACTTTCCAGGCCTTTCTCAAGTCTGAGTTCAGCGATGAGAATATTGAATTCTGGACGACCTGCGAGGAATTCAAGAAAATCAAGTGCAACTCTAGACTGAACTCCAGAGCCAAGAAGATATTTGAACGCTACGTTCGGGCCGAAGCTCcaaaagagATCAATATTGACCACAAAACCAGGGAGCTGATCAAACAGAATGTCCAAACCCCAACGAGGTATTGCTTTGAAGAGGCCCAGAAGATCGTCTTTAGCCTAATGGAAAAGGACTCGTACCCCAGGTTCCTCCGTTCTGACTTCTACAGAACCCTTCTGGAATCAGTCTCATAAGGATCAAGTTGTGAAAGATACGGCTTGGGAAAAGAGACCTGGATAACCTGGTGGCTCATCTTTAAGGACTATAGCACAAGAGCTCAATAAGGACAAAGGCAAGGGCTGGCCCTGACCCTGGGCTTGGACATCTGGACTGATCTGGATTCTGGATACACAGAACTCTGACATTGGTCACTCCTGCAGCTGGATTGACCTCTTCTACCTACATCTGTTGCCCTGCTGCCTTGCTCTTCTGCTACACTACATAAATGGATGAGTAACATGCCCCAAAAGCTAAACGAGCTGTCATTGGAACTATAATGCGAAGTTCATGAGCTACTTGGTAATTTCTGTAAGATGAGAAAAGTCCCCATGGTTAGCTTTGTATACCACTTCCACCGATAAGATGTTATCATAAGCTAGTTTAACACTGTGAAATTTCAGCAGACTTTTGAGATTATTATTTGTCTCACAGTACACAATGATGAAAGTCATTTCTGGGCCAAATTCTATAACAGTCTACGCAATTACTCATGATAATGCATGTGAGATTCTATGATAAAAAGTACTATTATCATgttctgcttacatcatcaatcagcGTGATCTGAGGTCATGGAGAAAGTGACCCAGTTTTCctgttggtggattttagatgagcATTGAGCAACGCTCACACTTTCGGACACTGACAGAAATTTGTGGTCAAACATGTTTGATCACAATGGAACTAAACTGTCCACCAGTGAGCACACCAGCTTATGTGTTGTAAGCCTGCTGATTTTAACTCACAGTTGAAGAATTCTTTAATGATTCCAATTTTGTCCATGACAGTAAAATCAAGCGGAAAACCGTAAAGTGTAAACCCGGCTTTAATTGCACAATAAGCAGATAACATTTCAAATGAGcgatatttttttatatgttttatatggcAGCATAATTGTGGTGAGataattatttccttttttaccAAACTGGAAGAGAAGCATGGGCAGAGGTCTAGATAAAAGTACCAGTAGTTCATTGGACtaagttgcctttttttttttttttaaagacatgaGTACTGGAACTGAAAATGTTTTGGGgctctttttatataaaaaaaaaaagtcagttgaAAGGAGTTATTTCtacttgtacatgtaaacaagACAGGTTAATCACATTCACTAGCTCTCTTATGGAGGTGAAGAAATAACTTCTATGTAAATGGTGCATAAGGTATgaattttatatactgtatatatgtatatgttttaaAACGTATgacttttatattaaattatggCTCCATTGCGGAGACTTTTGTACTGGTTAATGTTGGACTTTGAAGGGATTTTAGGATCTCCAGAGAGAAGAATTGAAAGGACTTGTCTCCTAAGAAAATGGCCTAATTACATCCAGTAACCCACTTAGACAGCTTAAGAAATTCTTTAGTGTAAAAGCTCTGACTTTTATGTACTGTTTTATGTACTATATTTGTTCATGGTTTTAAATTATGATTTCATTATGGACATTTATTTGGGTATTTCACTGGTTGAAATTCCCCAGTATATATCTGTGGAGACTTCTCTAACTCTTACTAAGacataatgaataaatgcaaaacTTACAAGAAG

Function

NR:

description
PREDICTED: regulator of G-protein signaling 21-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936317.2 True 2233 mRNA 0.39 5 29998504 30001345

Neighbor

gene id symbol gene type direction distance location
rgs1 LOC108267137 coding upstream 9069 29986185 ~ 29989435 (+)
rgs18 LOC108268317,LOC108428888 coding upstream 22213 29967671 ~ 29976291 (+)
LOC113539887 dbt,LOC108267843,LOC108411488 coding upstream 237532 29752071 ~ 29760972 (+)
rc3h1b LOC108267889,LOC108437509,LOC107681708 coding upstream 277736 29704488 ~ 29720768 (+)
LOC113540482 LOC108267690 coding upstream 395674 29596466 ~ 29602830 (+)
blvra blvra coding downstream 13310 30014655 ~ 30022571 (+)
ebi3 LOC108267125 coding downstream 44550 30045895 ~ 30050490 (+)
keap1a keap1a,LOC108268010,LOC108428896,LOC107721712,LOC107690048,LOC107588875,LOC107749088 coding downstream 96360 30097705 ~ 30109835 (+)
zgc:110158 zgc:110158,LOC108267812,LOC108428898,LOC107678694,LOC105906991,LOC107690032 coding downstream 137658 30139003 ~ 30194574 (+)
znf622 znf622,LOC107721690 coding downstream 198349 30199694 ~ 30204010 (+)
G73512 NA non-coding upstream 68336 29929938 ~ 29930168 (+)
G73185 NA non-coding upstream 204299 29792516 ~ 29794205 (+)
G73169 NA non-coding upstream 232398 29765120 ~ 29766106 (+)
G73155 NA non-coding upstream 265141 29732651 ~ 29733363 (+)
G73123 NA non-coding upstream 274754 29722066 ~ 29723750 (+)
G73533 NA non-coding downstream 30965 30032310 ~ 30032788 (+)
G73564 NA non-coding downstream 83093 30084438 ~ 30084819 (+)
G73545 NA non-coding downstream 109267 30110612 ~ 30111156 (+)
G73567 NA non-coding downstream 111044 30112389 ~ 30112630 (+)
G73568 NA non-coding downstream 116661 30118006 ~ 30118492 (+)
zgc:153115 LOC108268059 other upstream 317329 29673514 ~ 29681175 (+)
asip2b NA other upstream 374707 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 802355 29181767 ~ 29196149 (+)
G72873 NA other upstream 1086400 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 1201345 28792847 ~ 28797159 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 453412 30454757 ~ 30478293 (+)
G73944 NA other downstream 744786 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1060385 31061730 ~ 31097929 (+)
c4h22orf39 c7h22orf39 other downstream 1349856 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 1758544 31759889 ~ 31776798 (+)

Expression


Co-expression Network