LOC113540096 (coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044)


Basic Information

Item Value
gene id LOC113540096
gene name coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29903744 ~ 30014565 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936321.2
TTTTAGTTAAGAGATAATGTGCTTAGTGAACTCTTTAGCTTAGTGAACTCTTTTAACAGTAGTATAGTATTGCAATGTTTCGATTTATATTGTAACCATATTAAGCGTACAATAAAGTTTGGTGGATTCAAAACAAAGATGGCCGCTTCCATGTACTACAAGGTGATGTAGCGAAGTCTGCCTATTTATTGGTCATTACTCATTTTTACTGATGGTTAAGATACTCATGATCTACTGAGCAATTGAGAACTTCAGGATGAGCCGCTCTATCAACCACCTGCAGCAGATGACCATCTTCGTCACCGTGGTTACGGGCGGAGGCTGTGGGGTGATGTACTACCTCATGCAGAAAAACTTTGCCAAATCGGAGTACTATCGATCTGCAGTTGAGCAGCTAAACGATCACTCCACGGCGATGGCCAATCTGGGAGCTCCTCCCTTAAAGATCCACAACATCCATCTCACCGATCGCTATAACCGCGTCGATCACTCCATCGCCCAGctaaaaaTCCCTGTGACTGGATCGAAGACAGGAGGCTACCTGTACACGACATCCATCAGAGACGCTATTATGAACAGGTGGCATCTCCAGCGAGTGGCTTTGCAGCTCAAGACCGGCGAGACCATCGAGATTTTTCCCAGAACAGAATCCGAGTAGCTTTACACGTAGCTTCACTGTTTTGCTTGTTATAATGGATATGAACTGCAGATATAAGGATAGCTAAAAGGTGAAAAATGACAAGCGAATATAGATTTAGTGTCAATAATGTgctgaataatgtattttttttaaaaatatatatatatatatattttacataataatgtgtataacaATAGCCAAAACAGATCATAGTGTATTCCTTTCAAAATAGATATGCTATGATGGACAaacaatttcaataaaaaaaaaaaatcaaggaaaTACTACATATGAAAGCGTTTCATTGTAAATTATGCAAAGTCTAAGCAAAAGACGAGATGTTTTTGTGACTGAGCA
>XM_034303702.1
TTTTAGTTAAGAGATAATGTGCTTAGTGAACTCTTTAGCTTAGTGAACTCTTTTAACAGTAGTATAGTATTGCAATGTTTCGATTTATATTGTAACCATATTAAGCGTACAATAAAGTTTGGTGGATTCAAAACAAAGATGGCCGCTTCCATGTACTACAAGGTGATGTAGCGAAGTCTGCCTATTTATTGGTCATTACTCATTTTTACTGATGGTTAAGATACTCATGATCTACTGAGCAATTGAGAACTTCAGGATGAGCCGCTCTATCAACCACCTGCAGCAGATGACCATCTTCGTCACCGTGGTTACGGGCGGAGGCTGTGGGGTGATGTACTACCTCATGCAGAAAAACTTTGCCAAATCGGAGTACTATCGATCTGCAGTTGAGCAGCTAAACGATCACTCCACGGCGATGGCCAATCTGGGAGCTCCTCCCTTAAAGATCCACAACATCCATCTCACCGATCGCTATAACCGCGTCGATCACTCCATCGCCCAGctaaaaaTCCCTGTGACTGGATCGAAGACAGGAGGCTACCTGTACACGACATCCATCAGAGACGCTATTATGAACAGGGTTGCGGTGGAAGGGGAAGGAAGACgtacacactggatgggactTCAGTGCAACACAggAAATCCTAACATCGTAAAAGGCTATAGCAGAAGTCAGAACAGACGAAGGCAACACGTAGCacggataatccataatcataaaccGGCTGAGAATCgaaaaccaggaagtacaaGCAGTGAAATCTACAAGAGTGATCCCTCTGCTGATTTTCAGGAGCTGCTTTAGCGCACTGAGAGCCAG
>XM_034303703.1
TTTTAGTTAAGAGATAATGTGCTTAGTGAACTCTTTAGCTTAGTGAACTCTTTTAACAGTAGTATAGTATTGCAATGTTTCGATTTATATTGTAACCATATTAAGCGTACAATAAAGTTTGGTGGATTCAAAACAAAGATGGCCGCTTCCATGTACTACAAGATCTACTGAGCAATTGAGAACTTCAGGATGAGCCGCTCTATCAACCACCTGCAGCAGATGACCATCTTCGTCACCGTGGTTACGGGCGGAGGCTGTGGGGTGATGTACTACCTCATGCAGAAAAACTTTGCCAAATCGGAGTACTATCGATCTGCAGTTGAGCAGCTAAACGATCACTCCACGGCGATGGCCAATCTGGGAGCTCCTCCCTTAAAGATCCACAACATCCATCTCACCGATCGCTATAACCGCGTCGATCACTCCATCGCCCAGctaaaaaTCCCTGTGACTGGATCGAAGACAGGAGGCTACCTGTACACGACATCCATCAGAGACGCTATTATGAACAGGGTTGCGGTGGAAGGGGAAGGAAGACgtacacactggatgggactTCAGTGCAACACAggAAATCCTAACATCGTAAAAGGCTATAGCAGAAGTCAGAACAGACGAAGGCAACACGTAGCacggataatccataatcataaaccGGCTGAGAATCgaaaaccaggaagtacaaGCAGTGAAATCTACAAGAGTGATCCCTCTGCTGATTTTCAGGAGCTGCTTTAGCGCACTGAGAGCCAG
>XM_034303704.1
TTTTAGTTAAGAGATAATGTGCTTAGTGAACTCTTTAGCTTAGTGAACTCTTTTAACAGTAGTATAGTATTGCAATGTTTCGATTTATATTGTAACCATATTAAGCGTACAATAAAGTTTGGTGGATTCAAAACAAAGATGGCCGCTTCCATGTACTACAAGGTGATGTAGCGAAGTCTGCCTATTTATTGGTCATTACTCATTTTTACTGATGGTTAAGATACTCATGGTAGGTTTGATACTCATGATCTACTGAGCAATTGAGAACTTCAGGATGAGCCGCTCTATCAACCACCTGCAGCAGATGACCATCTTCGTCACCGTGGTTACGGGCGGAGGCTGTGGGGTGATGTACTACCTCATGCAGAAAAACTTTGCCAAATCGGAGTACTATCGATCTGCAGTTGAGCAGCTAAACGATCACTCCACGGCGATGGCCAATCTGGGAGCTCCTCCCTTAAAGATCCACAACATCCATCTCACCGATCGCTATAACCGCGTCGATCACTCCATCGCCCAGctaaaaaTCCCTGTGACTGGATCGAAGACAGGAGGCTACCTGTACACGACATCCATCAGAGACGCTATTATGAACAGGGTTGCGGTGGAAGGGGAAGGAAGACgtacacactggatgggactTCAGTGCAACACAggAAATCCTAACATCGTAAAAGGCTATAGCAGAAGTCAGAACAGACGAAGGCAACACGTAGCacggataatccataatcataaaccGGCTGAGAATCgaaaaccaggaagtacaaGCAGTGAAATCTACAAGAGTGATCCCTCTGCTGATTTTCAGGAGCTGCTTTAGCGCACTGAGAGCCAG

Function

symbol description
coa1 Orthologous to human COA1 (cytochrome c oxidase assembly factor 1).

NR:

description
PREDICTED: cytochrome c oxidase assembly factor 1 homolog

GO: NA

KEGG:

id description
K18173 COA1; cytochrome c oxidase assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936321.2 True 1000 mRNA 0.39 5 30009419 30014565
XM_034303702.1 False 820 mRNA 0.45 7 29903744 30014565
XM_034303703.1 False 753 mRNA 0.46 7 29903744 30014565
XM_034303704.1 False 838 mRNA 0.45 7 29903744 30014565

Neighbor

gene id symbol gene type direction distance location
brinp3b LOC108267163 coding downstream 4218 29868591 ~ 29899526 (-)
rgs5b LOC108267191 coding downstream 68553 29833662 ~ 29835191 (-)
nos1apb LOC108267139 coding downstream 78603 29813527 ~ 29825141 (-)
ddr2b LOC108267138 coding downstream 91187 29797070 ~ 29812557 (-)
xpr1b xpr1,LOC108267842,LOC107681714,LOC107593799,LOC107715512,LOC107722139,LOC105029208 coding downstream 109602 29766208 ~ 29794142 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding upstream 10504 30025069 ~ 30037066 (-)
LOC113540054 NA coding upstream 22843 30037408 ~ 30043011 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding upstream 35995 30050560 ~ 30056720 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding upstream 49485 30064050 ~ 30084861 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding upstream 197824 30212389 ~ 30223320 (-)
G73492 NA non-coding downstream 56853 29846674 ~ 29846891 (-)
G73485 NA non-coding downstream 110100 29792212 ~ 29793644 (-)
G73481 NA non-coding downstream 123612 29778555 ~ 29780132 (-)
G73444 NA non-coding downstream 137629 29765747 ~ 29766115 (-)
G73448 NA non-coding downstream 138112 29765124 ~ 29765632 (-)
G73652 NA non-coding upstream 81225 30095790 ~ 30097973 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding upstream 86875 30101440 ~ 30102870 (-)
LOC113540631 NA non-coding upstream 114163 30128728 ~ 30138872 (-)
G73670 NA non-coding upstream 172331 30186896 ~ 30191121 (-)
G73684 NA non-coding upstream 181114 30195679 ~ 30197576 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 172887 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 328017 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 731823 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1018779 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 1111915 28787614 ~ 28791829 (-)
G73619 blvra other upstream 4941 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 726962 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 758884 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1232495 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1855953 31870518 ~ 31871874 (-)

Expression


Co-expression Network