ackr4a (LOC108267630)


Basic Information

Item Value
gene id ackr4a
gene name LOC108267630
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23273523 ~ 23276801 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936337.2
cacagagagagagagtgacgtGGATCACTGGTCTGGAGTTTGCACACTTGGCAGCAAGGCAAGCAGGACAACAAACTAGAAGCTGTTCTCTGGCTCCTCATACAAGAATCAACATTGCATGTTTGGAAAGAATTTGCCCACAgtctttgacaaaaaaaaaaaaagaagcacagagggAATGTCAGGAATTGTGCAATTAAACCTTAACTTTAAAAACAATATGGATTACACAGATGACGAGACTTATGACATTGAGGAAAATGACAACTTCAGCTACTACAACTACAGTGACTACGAAACCGTCTGTGAAAAAGAAGATGTTCGCTCCTTCGCTAGAGTCTTCCTACCAATTGTGTATGGGTTATCTCTATTAGTGGGGCTAACAGGAAATGCTCTGGTAGTGGCTGTGTATGCATATTCCAAACGCTTGAGGACGCTGATGGACACATTTGTGGTGCACCTGGCCGTGGCCGACCTCCTACTCCTACTGACCCTACCTTTCTGGGCTGCTGCTGCCGTTCATGGCTGGGAGCTAGGAGAGGTTCTCTGCAAGATTGTCACAGCCTTATACACCATCAACTTCACATGCAGCATGTTACTCCTGGCCTGCATCAGCCTGGACCGCTACCTTTCACTATTCCCACGACTCAGAGACCGTTTCCTGGTCCGGATATTTAAGAGAAACTACGCCGCCAAGCTCTGCCTGGTAGTGTGGACAGTTAGTTTCTTTCTAGGAATCCCTGATTTGGTGCTCTCGAAAGTTAAAGAGCATCCTAGTAGGAAGGTCTGCATGACCATGTACCCTTCAAGCATGGCCATTCAGGCAAAGGTGACCATGGAGGTGATAGAGGTGCTGCTGAGTTTCTTGGTGCCGTTGCTGATGATGCTGTATTGCTATTTCCATGTGGTACGGAAGCTGTTGGAGCTTCCACCAGAGAACAGAGGGAAAAGGTGGACAACAATTCGTGTACTGTTGGCAGTGGTTGGAGTTTTTGTGCTTACACAGTTTCCCTACAATATTGTGAAGTTCTGCCGAGTTCTGGATGTGATTCACATGTTCATAAGGCACTGTCAGACAAGTAAAGCACTGGACCAGGCAGCTCAGATTACTGAGAGTATGGCTTTGATCCACTGTTGTCTGAACCCTGTGCTTTATGTCTTTATTGGCTCATCCTTTAGAATACGTCTGCTAAGGTTTGCCAAAGCCTTTGGCCAGAGGAGGAGATTGGCACAGAGGGGAGAGGAGTGTGGTGTGGAGATCTCCGTTAATTCACACTCGCAATCCCAAAAGACAAGCTCCTTCTCCATATGAGTATATTTAAGAGTGATATAGAGGATGAGATATgaaatgtatgtttgtgtatctATCTGTATTCTATATTTAACAGCATAACCATGTTCTGATATATATTCGCATATTATCATTCAGTGAAGAAAGACCAGAAAAACAGGCTGGTTGAACTGGAATGCTACTGAAGTTGTTTTCTCTTTAACGGTAATGCCCTTTGTACTCAAGCAAAAGCTAAAAGTAAAAGAAACCCAAGCCCCAACAGACAGAGATGTACTTTGACAATATGTGCTAAATCAATTTAATACTAGTAAACTGCTCTGAAGTAAACTGGTGAAATGAACTGAACAAAGAAAGAACTGAACAACAACTGAACAAGATCTTAAATCATCACATTGCTCACCATCCAGCCAGGATTGAGAGGGGGTCAAAATACTGCACCCacaaaacacattacacacatatgcTACACATTGTGAAGATTTTCAACTCTTTTTCTTCTACAATATTTATATCGTCTTCTGACTAAACGTAGCTATATATCATTGCAGTTCACACTATGAACTATAATAGAGTAAGAGTTGTGGTgggtaaaaacaaacaacatgacTGCCTCCTACTAACACCCTCACTCAGTCTATCAGGTAGGTATTTGACTTGACTAtttgaattattaaatattcctTACATGATTAGAGATACAACTTCTAAATAAAGTGTGTACATACACA
>XM_026936338.2
cacacacacacacactcacagacacagagagagagagtgacgtGGATCACTGGTCTGGAGTTTGCACACTTGGCAGCAAGGCAAGCAGGACAACAAACTAGAAGCTGTTCTCTGGCTCCTCATACAAGAAACCTTAACTTTAAAAACAATATGGATTACACAGATGACGAGACTTATGACATTGAGGAAAATGACAACTTCAGCTACTACAACTACAGTGACTACGAAACCGTCTGTGAAAAAGAAGATGTTCGCTCCTTCGCTAGAGTCTTCCTACCAATTGTGTATGGGTTATCTCTATTAGTGGGGCTAACAGGAAATGCTCTGGTAGTGGCTGTGTATGCATATTCCAAACGCTTGAGGACGCTGATGGACACATTTGTGGTGCACCTGGCCGTGGCCGACCTCCTACTCCTACTGACCCTACCTTTCTGGGCTGCTGCTGCCGTTCATGGCTGGGAGCTAGGAGAGGTTCTCTGCAAGATTGTCACAGCCTTATACACCATCAACTTCACATGCAGCATGTTACTCCTGGCCTGCATCAGCCTGGACCGCTACCTTTCACTATTCCCACGACTCAGAGACCGTTTCCTGGTCCGGATATTTAAGAGAAACTACGCCGCCAAGCTCTGCCTGGTAGTGTGGACAGTTAGTTTCTTTCTAGGAATCCCTGATTTGGTGCTCTCGAAAGTTAAAGAGCATCCTAGTAGGAAGGTCTGCATGACCATGTACCCTTCAAGCATGGCCATTCAGGCAAAGGTGACCATGGAGGTGATAGAGGTGCTGCTGAGTTTCTTGGTGCCGTTGCTGATGATGCTGTATTGCTATTTCCATGTGGTACGGAAGCTGTTGGAGCTTCCACCAGAGAACAGAGGGAAAAGGTGGACAACAATTCGTGTACTGTTGGCAGTGGTTGGAGTTTTTGTGCTTACACAGTTTCCCTACAATATTGTGAAGTTCTGCCGAGTTCTGGATGTGATTCACATGTTCATAAGGCACTGTCAGACAAGTAAAGCACTGGACCAGGCAGCTCAGATTACTGAGAGTATGGCTTTGATCCACTGTTGTCTGAACCCTGTGCTTTATGTCTTTATTGGCTCATCCTTTAGAATACGTCTGCTAAGGTTTGCCAAAGCCTTTGGCCAGAGGAGGAGATTGGCACAGAGGGGAGAGGAGTGTGGTGTGGAGATCTCCGTTAATTCACACTCGCAATCCCAAAAGACAAGCTCCTTCTCCATATGAGTATATTTAAGAGTGATATAGAGGATGAGATATgaaatgtatgtttgtgtatctATCTGTATTCTATATTTAACAGCATAACCATGTTCTGATATATATTCGCATATTATCATTCAGTGAAGAAAGACCAGAAAAACAGGCTGGTTGAACTGGAATGCTACTGAAGTTGTTTTCTCTTTAACGGTAATGCCCTTTGTACTCAAGCAAAAGCTAAAAGTAAAAGAAACCCAAGCCCCAACAGACAGAGATGTACTTTGACAATATGTGCTAAATCAATTTAATACTAGTAAACTGCTCTGAAGTAAACTGGTGAAATGAACTGAACAAAGAAAGAACTGAACAACAACTGAACAAGATCTTAAATCATCACATTGCTCACCATCCAGCCAGGATTGAGAGGGGGTCAAAATACTGCACCCacaaaacacattacacacatatgcTACACATTGTGAAGATTTTCAACTCTTTTTCTTCTACAATATTTATATCGTCTTCTGACTAAACGTAGCTATATATCATTGCAGTTCACACTATGAACTATAATAGAGTAAGAGTTGTGGTgggtaaaaacaaacaacatgacTGCCTCCTACTAACACCCTCACTCAGTCTATCAGGTAGGTATTTGACTTGACTAtttgaattattaaatattcctTACATGATTAGAGATACAACTTCTAAATAAAGTGTGTACATACACA
>XM_034303654.1
cacagagagagagagtgacgtGGATCACTGGTCTGGAGTTTGCACACTTGGCAGCAAGGCAAGCAGGACAACAAACTAGAAGCTGTTCTCTGGCTCCTCATACAAGAATCAACATTGCATGTTTGGAAAGAATTTGCCCACAgtctttgacaaaaaaaaaaaaagaagcacagagggAATGTCAGGAATTGTGCAATTGTACGTTTAAAGAAACCTTAACTTTAAAAACAATATGGATTACACAGATGACGAGACTTATGACATTGAGGAAAATGACAACTTCAGCTACTACAACTACAGTGACTACGAAACCGTCTGTGAAAAAGAAGATGTTCGCTCCTTCGCTAGAGTCTTCCTACCAATTGTGTATGGGTTATCTCTATTAGTGGGGCTAACAGGAAATGCTCTGGTAGTGGCTGTGTATGCATATTCCAAACGCTTGAGGACGCTGATGGACACATTTGTGGTGCACCTGGCCGTGGCCGACCTCCTACTCCTACTGACCCTACCTTTCTGGGCTGCTGCTGCCGTTCATGGCTGGGAGCTAGGAGAGGTTCTCTGCAAGATTGTCACAGCCTTATACACCATCAACTTCACATGCAGCATGTTACTCCTGGCCTGCATCAGCCTGGACCGCTACCTTTCACTATTCCCACGACTCAGAGACCGTTTCCTGGTCCGGATATTTAAGAGAAACTACGCCGCCAAGCTCTGCCTGGTAGTGTGGACAGTTAGTTTCTTTCTAGGAATCCCTGATTTGGTGCTCTCGAAAGTTAAAGAGCATCCTAGTAGGAAGGTCTGCATGACCATGTACCCTTCAAGCATGGCCATTCAGGCAAAGGTGACCATGGAGGTGATAGAGGTGCTGCTGAGTTTCTTGGTGCCGTTGCTGATGATGCTGTATTGCTATTTCCATGTGGTACGGAAGCTGTTGGAGCTTCCACCAGAGAACAGAGGGAAAAGGTGGACAACAATTCGTGTACTGTTGGCAGTGGTTGGAGTTTTTGTGCTTACACAGTTTCCCTACAATATTGTGAAGTTCTGCCGAGTTCTGGATGTGATTCACATGTTCATAAGGCACTGTCAGACAAGTAAAGCACTGGACCAGGCAGCTCAGATTACTGAGAGTATGGCTTTGATCCACTGTTGTCTGAACCCTGTGCTTTATGTCTTTATTGGCTCATCCTTTAGAATACGTCTGCTAAGGTTTGCCAAAGCCTTTGGCCAGAGGAGGAGATTGGCACAGAGGGGAGAGGAGTGTGGTGTGGAGATCTCCGTTAATTCACACTCGCAATCCCAAAAGACAAGCTCCTTCTCCATATGAGTATATTTAAGAGTGATATAGAGGATGAGATATgaaatgtatgtttgtgtatctATCTGTATTCTATATTTAACAGCATAACCATGTTCTGATATATATTCGCATATTATCATTCAGTGAAGAAAGACCAGAAAAACAGGCTGGTTGAACTGGAATGCTACTGAAGTTGTTTTCTCTTTAACGGTAATGCCCTTTGTACTCAAGCAAAAGCTAAAAGTAAAAGAAACCCAAGCCCCAACAGACAGAGATGTACTTTGACAATATGTGCTAAATCAATTTAATACTAGTAAACTGCTCTGAAGTAAACTGGTGAAATGAACTGAACAAAGAAAGAACTGAACAACAACTGAACAAGATCTTAAATCATCACATTGCTCACCATCCAGCCAGGATTGAGAGGGGGTCAAAATACTGCACCCacaaaacacattacacacatatgcTACACATTGTGAAGATTTTCAACTCTTTTTCTTCTACAATATTTATATCGTCTTCTGACTAAACGTAGCTATATATCATTGCAGTTCACACTATGAACTATAATAGAGTAAGAGTTGTGGTgggtaaaaacaaacaacatgacTGCCTCCTACTAACACCCTCACTCAGTCTATCAGGTAGGTATTTGACTTGACTAtttgaattattaaatattcctTACATGATTAGAGATACAACTTCTAAATAAAGTGTGTACATACACA

Function

NR:

description
PREDICTED: atypical chemokine receptor 4-like

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04186 ACKR4, CCRL1, CCR11; atypical chemokine receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936337.2 False 2019 mRNA 0.42 3 23273545 23276801
XM_026936338.2 False 1949 mRNA 0.43 2 23273523 23276801
XM_034303654.1 True 2031 mRNA 0.42 3 23273545 23276801

Neighbor

gene id symbol gene type direction distance location
si:ch211-106h4.6 LOC108267631 coding upstream 43070 23215075 ~ 23230453 (+)
si:ch211-106h4.4 NA coding upstream 59332 23181870 ~ 23214191 (+)
cacnb2b cacnb2b,LOC108267179,LOC107713974,LOC107686054 coding upstream 129437 23124180 ~ 23144086 (+)
si:dkey-32m20.1 LOC108267269 coding upstream 163820 23105623 ~ 23109703 (+)
LOC113540574 stam,LOC108267818 coding upstream 169735 23054500 ~ 23103788 (+)
rnf182 rnf182 coding downstream 68257 23345058 ~ 23349627 (+)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding downstream 77168 23353969 ~ 23376185 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding downstream 110208 23387009 ~ 23391001 (+)
stard3nl stard3nl,LOC107713985 coding downstream 115857 23392658 ~ 23401730 (+)
otulinb LOC108268091 coding downstream 318160 23594961 ~ 23608201 (+)
G69294 NA non-coding upstream 269421 23001998 ~ 23004102 (+)
LOC113540593 NA non-coding upstream 334782 22926810 ~ 22938741 (+)
G68999 NA non-coding upstream 745967 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 876422 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 885778 22383094 ~ 22387745 (+)
G69443 NA non-coding downstream 7753 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 14609 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 54232 23331033 ~ 23331529 (+)
G69522 NA non-coding downstream 90860 23367661 ~ 23368677 (+)
G69570 NA non-coding downstream 170662 23447463 ~ 23457206 (+)
LOC113540463 NA other upstream 621076 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1511222 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1633366 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1949556 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 2239770 21020258 ~ 21033753 (+)
G69509 LOC108267411 other downstream 41703 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 751305 24028106 ~ 24106223 (+)
G69971 NA other downstream 831994 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1582225 24859026 ~ 24871263 (+)
tnr tnr other downstream 2431026 25707827 ~ 25881110 (+)

Expression


Co-expression Network