fzr1b (fzr1b,LOC108268046,LOC108430732,LOC107719268,LOC107701330,LOC107722096)


Basic Information

Item Value
gene id fzr1b
gene name fzr1b,LOC108268046,LOC108430732,LOC107719268,LOC107701330,LOC107722096
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28716264 ~ 28722857 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936340.2
gcgTCGCAGCTGATTGTTCCGCCATCTTGACAGAAACGTAAACATTCATTCTCAGTCGCTTTGCTGGGAAGCTAACTGCGAATCTGTCCACAGCTAAATAAGACAGAAAACGGTTGGGTCCTGAACTTTTGTCAACAGATGCATCTTGAAAAATGATAACGGAGAGGTCGGATACTCAAAATGCCCCATAATTGCGTTTTATAAGCAGCAAAACAGggATGGAAGACGTGGGCAGAGCTGCGAGTGCAGACTGAGGCAGAGACAGAGCGGAAATGGACCAGGACTATGAGAGACGCCTCCTCAGGCAGATCAACCATCAGAACCTGCCAGATGGTCACGTGTCCAAGtcCGGCTTTGCCGCATGCAGTCCAGTCAGTGTTAAGTCAGGCGACAGATTCATACCCACTCGCGCAGGAAGCAACTGGAGCATCAACTTCCATTACGCCAACGAAAACTGCTGGTCTCCTAACCAGAATCAGCGCTCAAAGGACGCCAGTGCAGACACTGGAAAGGACGCAGTGGCCTATGCTGCTCTGCTGCGGAACGAGCTCCTGGGAGCGGGCATCGAGACCGTACCCGACCCTCACACAGACGACCGACGGCATGCCATCCTCTCCCAGGACATACACAGCCTCTTCAGGtacacacttcacacaaagAGAGTGCCTTTTGACAGCGGCAATGAAATCTCCCCATATTCCCTCTCTCCCCTCAGCAACAAAAGTCACAAGCTGTTGCGGTCACCGCGAAAGCCGGCACGAAAGATCTCCAAAATCCCCTTCAAGGTTCTGGATGCACCGGAGCTGCAGGATGACTTCTACCTTAACCTGGTAGACTGGTCAGCTGGAAACCTGCTCAGTGTTGGTCTTGGTGCTTGTGTGTACCTGTGGAGTGCCTGTACCAGTCAGGTGACGAGGTTGTGTGATCTGTCAGTCGATGGAGACTCTGTGACTTCAGTCTGCTGGAATGAGAGGgGAAGCCTGGTTGCTGTAGGAACCCACAAAGGCTTTGTGCAGATATGGGACGCAGCCGGAGGGAGGAAGTTAACCAGCCTGGAAGGACACTCGGCTCGTGTCGGAGCTTTAGCGTGGAACGGCGAGCAGCTGTCCTCGGGCAGCAGGGACAGGGTGATCCTACAGAGGGACGTCCGCGCGCCGCCTGCCGCTGAGAGAAGGCTACAGggccacagacaggaagtctGCGGCCTCAAGTGGTCCCCAGACCACCAGCATCTCGCCTCGGGAGGCAACGACAACAAGCTGCTAGTGTGGAACAGCTCGAGCCTGGTGCCCGTGCAGCAGTACAGCGAGCATTTAGCGGCGGTGAAGGCCATCGCCTGGTCGCCCCATCAGCACGGCCTGCTGGCATCCGGAGGAGGCACGGCCGACCGCTGCCTGCGCTTCTGGAACACGCTCACGGGACAGGCGCTGCAGAGCACCGACACCGGATCACAGGTCTGCAACCTGGCCTGGTCCAAACACGCCAACGagctgGTCAGCACACACGGCTACTCGCAAAACCAGATCCTGGTTTGGAAATATCCATCACTCACGCAGGTGGCCAAGCTGACCGGACATTCCTACCGTGTGCTCTACTTGGCTGTGTCTCCAGACGGCGAGGCTATAGTGACAGGAGCAGGAGATGAGACACTCAGGTTCTGGAACGTCTTCAGCAAAACGCGCTGCACCAAgGAATCCAAGTCAGTGTTGAATCTGTTCACCAGGATACGGTAGTGtcagaggacagaggaggaCTTGGGACTTTTCCGAGAGAACCCGAcgtctcttcctcctctccacACTCCTCCCCGTGTCTTCATTAAAAACCCACACCCGACGAGCGAGTCTGTTTGTTATCGTCCCGACTTTCTTATTACTGTATCATGTGAAAGTCCAAAAGGACGTGGTGTAATGTAAGTAGAGAGAGACGGTTTATCTATACGCCTGTCGTAATGGCTGTCTGCCCATTATGATATTTTCACTATTTTGTATGTGCAAATGCAAACGAGATCTCATTATCCGACAGAGGACCATATGGAAATAAACTCACTACTGCAGGATATCTGTTAGTAGTTTATGAAAATTT

Function

symbol description
fzr1b Predicted to enable anaphase-promoting complex binding activity and ubiquitin ligase activator activity. Predicted to be involved in anaphase-promoting complex-dependent catabolic process and positive regulation of anaphase-promoting complex-dependent catabolic process. Predicted to act upstream of or within positive regulation of ubiquitin protein ligase activity. Predicted to be part of anaphase-promoting complex. Orthologous to human FZR1 (fizzy and cell division cycle 20 related 1).

NR:

description
fizzy-related protein homolog isoform X1

GO: NA

KEGG:

id description
K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936340.2 True 2085 mRNA 0.54 15 28716264 28722857

Neighbor

gene id symbol gene type direction distance location
aldh9a1b aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 coding upstream 16848 28691096 ~ 28699416 (+)
slc1a7a slc1a7,slc1a7a,LOC107722044,LOC107681716,LOC107671767,LOC107593788 coding upstream 49633 28654756 ~ 28666631 (+)
LOC113540233 NA coding upstream 105107 28602905 ~ 28611157 (+)
rnf32 rnf32 coding upstream 127645 28558278 ~ 28588619 (+)
rbm33a rbm33 coding upstream 247412 28443778 ~ 28468852 (+)
si:ch73-344o19.1 NA coding downstream 16269 28739126 ~ 28745646 (+)
otol1a otol1,LOC108267659,LOC107701323,LOC107722646,LOC101471040,LOC102302270,LOC102789861,LOC102202439 coding downstream 56892 28779749 ~ 28784107 (+)
zgc:153615 zgc:153615,LOC108267208,LOC108430722,LOC103026425,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC105899149 coding downstream 91226 28814083 ~ 28823502 (+)
LOC113540201 LOC108267859 coding downstream 105095 28827952 ~ 28831728 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672,LOC107681819 coding downstream 109516 28832373 ~ 28842762 (+)
G72428 NA non-coding upstream 57728 28658276 ~ 28658536 (+)
G72422 NA non-coding upstream 64643 28651414 ~ 28651621 (+)
G72404 NA non-coding upstream 79063 28619824 ~ 28637201 (+)
G72408 LOC108267757,LOC108260929,LOC107751522,LOC107566606,LOC107702784 non-coding upstream 88291 28623240 ~ 28627973 (+)
G72378 NA non-coding upstream 137314 28574922 ~ 28578950 (+)
G72472 NA non-coding downstream 64760 28787617 ~ 28791836 (+)
G72869 NA non-coding downstream 139559 28862416 ~ 28901261 (+)
G72872 NA non-coding downstream 150746 28873603 ~ 28873988 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding downstream 191772 28914629 ~ 28915258 (+)
G72892 NA non-coding downstream 194885 28917742 ~ 28918398 (+)
insig1 insig1 other upstream 332842 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 378091 28316404 ~ 28338173 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 1309866 27384807 ~ 27406398 (+)
gng7 NA other upstream 1834794 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 2340438 26353189 ~ 26375826 (+)
gng5 NA other downstream 35688 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 69990 28792847 ~ 28797159 (+)
G72873 NA other downstream 151499 28874356 ~ 28912104 (+)
fubp1 fubp1 other downstream 458910 29181767 ~ 29196149 (+)
asip2b NA other downstream 897136 29619993 ~ 29623797 (+)

Expression


Co-expression Network