prdx1 (LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788)


Basic Information

Item Value
gene id prdx1
gene name LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28708029 ~ 28711708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936341.2
CATTGTATTACCGCTATGTGTCAATGAAGTCTCGCGAGATTTCAGCGTGGTTATATAAGCGCGCGCGACAGCGGCTCAGCAGGTTTTCCTAACTTCCACAGAGAGGCGTAAACAAAGTCCAACAGAAGATGTCCGCTGGTAAAGCACAAATCGGCAAACCTGCCCCTGACTTCACAGCCAAGGCAGTGATGCCTGATGGCCAGTTTAAGGATCTGAAGTTGTCGGATTATCGAGggAAGTATGTAGTTTTCTTCTTCTACCCCCTGGACTTCACCTTCGTGTGTCCCACCGAGATCATCGCCTTCAGCGATGCAGCAGAGGAATTCAGAAAGATCGACTGCGAGGTCATCGGTGCGTCTGTGGACTCACACTTCTGCCATCTGGCCTGgaTAAACACCCCCAGGAAGCAAGGAGGCCTGGGACATATGAAGGTCCCTCTGGTGGCCGACACCAAACGGTCCATCTCTCAAGACTACGGTGTACTGAAGGAGGACGAAGGCATCGCTTACAGAGGCCTGTTCATCATTGACGATAAAGGCATCCTGAGGCAGATAACCATTAACGACCTGCCGGTTGGTCGCTCGATcgacgagacgctgcgtctggTGCAGGCCTTTCAGTTCACTGACAAACACGGAGAAGTTTGCCCCGCCGGATGGAAGCCCGGAAAGGACACAATCAAGCCCGATGTCCAGAAGAGCAAAGATTTCTTCtccaaacaaaactaaacacatAAGACTCTGCAGTGTAGTCTAACAGGCCCCACACTGGCACTTGTCTCAAACCTCAGTAACAATTCCCTCTCTGTTAAGCCTGAAATAAGTGTGTAGGATCATAATTGTTGTTTATGTTGTGTGACTTTGTGAGAAGTATGACGGTCATGTAGAAGACTACTATTTTGTATGTTTACACCTTTTATCATGTTTCCTTTGTGAGATAAAAAGGATAATAACAGATGGGGGACCTGGTTTTTATTCTGGTTTCAGTAAGAACAGATTTTGTAGCACAGCAcgatgagggaatgactttgCGCTTGCCCAAGTTCCTGATTGCCTGCATTTCAACCAAGAAACCAAGGTTTTGTAACAGATTTAAGCTAACTTTTAAAGCTTGCTGATAAAGCAATATCATTTAAGAAgtttatacatattatacacacaatTTATACAATAAATGTTTTGACTAAA
>XM_034303626.1
tgattaaataatgtttaaatgagTCCAACAGAAGATGTCCGCTGGTAAAGCACAAATCGGCAAACCTGCCCCTGACTTCACAGCCAAGGCAGTGATGCCTGATGGCCAGTTTAAGGATCTGAAGTTGTCGGATTATCGAGggAAGTATGTAGTTTTCTTCTTCTACCCCCTGGACTTCACCTTCGTGTGTCCCACCGAGATCATCGCCTTCAGCGATGCAGCAGAGGAATTCAGAAAGATCGACTGCGAGGTCATCGGTGCGTCTGTGGACTCACACTTCTGCCATCTGGCCTGgaTAAACACCCCCAGGAAGCAAGGAGGCCTGGGACATATGAAGGTCCCTCTGGTGGCCGACACCAAACGGTCCATCTCTCAAGACTACGGTGTACTGAAGGAGGACGAAGGCATCGCTTACAGAGGCCTGTTCATCATTGACGATAAAGGCATCCTGAGGCAGATAACCATTAACGACCTGCCGGTTGGTCGCTCGATcgacgagacgctgcgtctggTGCAGGCCTTTCAGTTCACTGACAAACACGGAGAAGTTTGCCCCGCCGGATGGAAGCCCGGAAAGGACACAATCAAGCCCGATGTCCAGAAGAGCAAAGATTTCTTCtccaaacaaaactaaacacatAAGACTCTGCAGTGTAGTCTAACAGGCCCCACACTGGCACTTGTCTCAAACCTCAGTAACAATTCCCTCTCTGTTAAGCCTGAAATAAGTGTGTAGGATCATAATTGTTGTTTATGTTGTGTGACTTTGTGAGAAGTATGACGGTCATGTAGAAGACTACTATTTTGTATGTTTACACCTTTTATCATGTTTCCTTTGTGAGATAAAAAGGATAATAACAGATGGGGGACCTGGTTTTTATTCTGGTTTCAGTAAGAACAGATTTTGTAGCACAGCAcgatgagggaatgactttgCGCTTGCCCAAGTTCCTGATTGCCTGCATTTCAACCAAGAAACCAAGGTTTTGTAACAGATTTAAGCTAACTTTTAAAGCTTGCTGATAAAGCAATATCATTTAAGAAgtttatacatattatacacacaatTTATACAATAAATGTTTTGACTAAA

Function

NR:

description
peroxiredoxin

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG:

id description
K13279 PRDX1; peroxiredoxin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936341.2 True 1187 mRNA 0.46 6 28708029 28711708
XM_034303626.1 False 1093 mRNA 0.45 6 28708029 28711089

Neighbor

gene id symbol gene type direction distance location
zte38 LOC108267617,LOC108430736 coding downstream 1506 28699669 ~ 28706523 (-)
uck2b uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741 coding downstream 18017 28686556 ~ 28690012 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding downstream 22453 28682472 ~ 28685576 (-)
scp2a scp2,scp2a coding downstream 27325 28668979 ~ 28680704 (-)
dcaf8 dcaf8 coding downstream 65634 28632754 ~ 28642395 (-)
si:ch73-182a11.2 LOC108268045 coding upstream 11142 28722850 ~ 28736753 (-)
LOC113540626 rec8 coding upstream 33922 28745630 ~ 28756644 (-)
arl14 LOC108267661 coding upstream 50386 28762094 ~ 28763277 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding upstream 51596 28763304 ~ 28785755 (-)
LOC113540190 NA coding upstream 87269 28798977 ~ 28827964 (-)
G72796 NA non-coding downstream 39386 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 236258 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 324569 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 328897 28365657 ~ 28379132 (-)
G72665 NA non-coding downstream 567591 28138866 ~ 28140438 (-)
LOC117597077 NA non-coding upstream 1326 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 71215 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 120676 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 180308 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 228954 28940662 ~ 29029191 (-)
LOC113540437 fam159a other downstream 55604 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 471224 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 471762 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 482426 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 666244 28016064 ~ 28041785 (-)
LOC117597168 NA other upstream 75906 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 161870 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 436930 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 852513 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 1012880 29724588 ~ 29730857 (-)

Expression


Co-expression Network