rab1ba (rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295,LOC106532007)


Basic Information

Item Value
gene id rab1ba
gene name rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295,LOC106532007
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20652575 ~ 20660555 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936344.2
TACTGCCACGTCATCTGATGTCACTGCCGCACCTGCGCAGCCATCTTGTACTTCTCCTGCGGccagagaggaaggaagaaaagcaAGGATAAATCAACCGTGCTGTTATTCAGTATAGTAATGTGTGGTAAGTAAAaagagctgacagaaaggcagTGTGCAGCGTGACAGCAGCGGAGGGTAAACAGAGACACAGCAGCGTTCGCCACAGTGCCTCAGAATTACAGACGGAGGAATCATCTGTTATCTAGGAGTCAAAAGAGGAAGGAAAAGTGTCCGTCAGATTtccacctttaaaaaaatacacaccgGCCTTCACCCACCATGAATCCTGAATATGACTACCTGTTCAAACTGCTTCTCATTGGTGACTCTGGAGTGGGCAAATCGTGTCTCCTGTTGAGATTTGCAGATGACACGTACACAGAGAGCTACATCAGCACCATCGGAGTGGACTTCAAGATCCGCACCATTGAACTGGATGGCAAAACTATTAAGCTTCAGATTTGGGATACCGCTGGACAGGAAAGGTTTCGCACCATCACTTCCAGTTACTACAGAGGAGCCCATGGCATCATTGTGGTATATGATGTCACTGATCAGGAATCTTACAACAATGTAAAGCAGTGGCTGCAGGAGATTGATCGCTATGCCAGTGAGAATGTCAACAAGCTGCTGGTTGGGAACAAGTGCGACCTCACCACCAAGAAAGTAGTGGACTACACAACAGCCAAAGAATTTGCTGATTCTCTTGCCATCCCTTTCCTTGAAACGAGCGCTAAGAATGCCACCAATGTGGAGCAGGCCTTCATGACCATGGCTGCCGAGATCAAGAAACGCATGGGACCGGGAGCTACGGCTGGAGGAGACAAGCCCAACCTGAAGATTGAAAGCACTCCAGTTCGACAGTCTGGTGGTGGCTGCTGTTGAAGAGCCTCTCTctcgcacatacacacacaaaaacatgcccTCTCTgccctcacatacacacacacttgcatacaTCTAGGAGCATAAGAACAGAAGGTGAAGATGTTCTAACATTCTCATGGGAGTAACCACTGCGTTCGAAGCCAAAGCTTGAGGTTTAACTTTGGCTTCCTTGCATGGAGTTTTGTAGCTTCCTCTATGAGATCCTGGTCCTCTCCTTGCTTTTATACTCCTAGACTCACACCTTATCTCTCTCAACCTTTGTCTTCTCAGACCTTGATCTATTCTTCTACTTTATTCTCACCTGCCTTCAATTTCCACCCATAACCCCAATCCTCTACAGACACAGTGATTTCTGGGTCCCTAGAAAGCTACCTGTCCTATGACCGACAGGTGCAAATTCAGAATAGAAAAGTAATTGGCTTTTGGAGGACATCCTATTTATTATATGCACAGTTGAGGGACGTGAGTGAGGAGGGAATGTTACGTAACTATGTTTGTCATGAGGTCTCTCCCCAGTTTTGCATTCACAGATCCCACACACAAACCCTCGTACACTTGTGGAAGTTTCTTTGGATGTTGAGTGtataaagaatgaaaaacaaaaaatttggcaatattatatatttcatattctgATCTTACtaggattattattaattttaagacTTATTGTAGGTTTTTTcctaatcattattattatataaaagctTACTGCTGTCAAATGAAGGTGTTTGGCGGGGAGGGGGTGGAAAGCTTGATGTCTGGGGTTTAGGCTGGATGACTAAAGCTACTGTTCCCTGTTACCTCATTTAGCTCCTCCCCTGTCATTTGTTTTCAGTGTATTCAGGAGCAggacataaaaaatgttaaatccaTACTGGAACTGAAAAGCCTAGTGGTGGCACAATTTTCTCTTCTGTATTTTAAGTGAAAGTCAGTTGTTGTCCTTCGTCACTGGATGCTTGGTGCAGTAAGGCAGTGGTATACGTAAAATTCATGCAAGTTTTTTGCAGAGCAGTTTGTTTTTGGATTGCAAGTTGagcttttggtttttttattaagttttcCTGGTGTCATGGCTTTCACATATTCCACTCTGTGTAAGCTATTCTGTCTTTTGTCAAAATTACTGTAGTTTTTGGGTTTCTTTTTGTGCAAGATGTCTTAGGTTTGACGTGTGCTTTGACATCTTAGCGTTTTGACGAGCTGGTCCTTTAAAGAATCTGTATAGGCATTGCGCATGGTCCACTGTAACAACTCTGTGTTTGACACAACCCATCATCCCTACAAAACTGTGTGGTTtagaaatgtctttgtatgtgtaCATAAAGTGTAAACATACATGTAGAGGGATTTAATTTGAAATGTCCCATGAAGGTGTGTTAATCTGTGCGTCGTATCAAGATGGAGGATGATGGGACTGACTGGTCTTGGCATAGAGACCGGATATGACCTCCCATATCCTCCAAAAAGCAAAGTGCAACACTCATGTTTAAGTCCATTTTTGCATTAGGCCTGAAATAATCCTTAAAGTAATCTACAGGACCTTCCTCTATTTGGTCCAGACCAGTACAAAAATCTTGTctcaaaaaaatgcatttttggcAGTATGAGGGTTATATATAGGTCATCAGATTAAAGCCCCTCTACTCTCTACTACTCAGTGTGATTTCAACTGCAGATAACATAACAATATCCctttactgaatattttagGTTCAGAGCCCATGAGTAGTCACAGCCTCTGGTGGACAGCAGACAGTGTTTTTGTCATATAGAAAGTGgatctagaaaaaaaacatagatgCAGTTTGTAGAGTTCACTGTTTAAGTGTTGACCTGTCTTAAATGAGTGCACCAGTGTCTTTCATACTGTAATATTAGATTACTAATAAACTGAGCCATTTAAAACTACTTTTAATGCCACTTCAGCCATTGCTAACCTCAGAATAACAACTGTTTTGGGAGATTAAAGACAATGTTTAGTGAGTGACGGGACTGGTGGAATGGGGGTGGAGGGAGCAGTAGCAGGTTGGTGGGGGGTGTACAGGATGGGGTTGGGTTTACTGTATTTAGGAACATTCCTTCTATTTCAATTACATGTgatgtctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatctatgtctCACTTCAGACCTGTACTCCATCACACATTAAATCTGAGTGCACCCTGTTTCCGACATGttcagaatgtgttttttttttttgccccatgAGGCTTGCTGTTCTACTGATTTTAACCTATGAATTGAGCTATTACATTGTGATGCTGTGTGTCTGATTAATGGATATGGGCCTAGGGGCAATATTGTAGAGGGGTGggacattattaaaaatggGGAGGGCTACTTCTGAATGTGATGGAATTTTGCCGcgtgctttttttgtttggcttttactttttaactttgtttattgttctctctctgtcatttgcACATCTCTATGTTGCTTTGGGTGAGGCATGATGAAGGCACGGGCGACGGTTGTAGCGAGCACCAGGCCGGTAGTTCTTCCCCTCTCCCTCTGCTTGCTCACTCTGGTGCTCTCTTTCATAGCTCAGTTTGatcatgtttttcttctttctgtacatattattataaatatatataataaaaaggaTCAATGTCTTaa

Function

symbol description
rab1ba Predicted to enable GTPase activity. Predicted to be involved in autophagosome assembly and intracellular protein transport. Predicted to be active in endomembrane system. Orthologous to several human genes including RAB1B (RAB1B, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-1B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936344.2 True 3595 mRNA 0.42 6 20652575 20660555

Neighbor

gene id symbol gene type direction distance location
si:ch73-40a2.1 LOC108267785 coding upstream 3389 20637228 ~ 20649186 (+)
ehbp1l1a LOC108267830 coding upstream 21589 20587612 ~ 20630986 (+)
LOC113539982 LOC108267206,LOC108440832 coding upstream 70563 20579774 ~ 20582012 (+)
taf6l taf6l,LOC107660726,LOC107679290,LOC107731936 coding upstream 75094 20570371 ~ 20577481 (+)
cth1 cth1,LOC108268299,LOC108440851,LOC103030689 coding upstream 82522 20567906 ~ 20570053 (+)
rce1a rce1,rce1a,LOC107683501,LOC107731886,LOC107679240,LOC107710076 coding downstream 22153 20682708 ~ 20692222 (+)
cd248a LOC108268330 coding downstream 75272 20735827 ~ 20739174 (+)
LOC113540687 LOC108267189 coding downstream 182789 20843344 ~ 20846978 (+)
pde5ab pde5a,pde5ab coding downstream 192189 20852744 ~ 20893531 (+)
arsj LOC108267195,LOC108436153,LOC107730122,LOC107698664,LOC559800,LOC107559837 coding downstream 251095 20911650 ~ 20926058 (+)
G68054 NA non-coding upstream 17010 20635348 ~ 20635565 (+)
G67958 LOC108267586 non-coding upstream 170820 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 376900 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 686687 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 735406 19916600 ~ 19917169 (+)
G68070 NA non-coding downstream 31708 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 204323 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 527976 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 545190 21205745 ~ 21209324 (+)
G68313 NA non-coding downstream 573470 21234025 ~ 21234258 (+)
fcer1g LOC100305060 other upstream 497798 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 585355 19990684 ~ 20067220 (+)
G66864 NA other upstream 1793923 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2444011 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2508944 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 359703 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 653663 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 968521 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1091861 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 1989255 22649810 ~ 22652447 (+)

Expression


Co-expression Network