otub1b (otub1,LOC106608596)


Basic Information

Item Value
gene id otub1b
gene name otub1,LOC106608596
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16649185 ~ 16653787 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936350.2
ACGATTGCTTAATTCCCTACGAAGTGGCCTTATCGATGTAACGAAGAGCTGTTTGGGATTTAACCGCTATCACAGAGGGAGGGGAAACAGAACCCtgaatccaagatggcggacgAGCAGCAGGAAACATCacagggagagatggaggGAGTGAACTGCCTGGCGTATGATGAGGCCATTATGGCACAGCAAGACCGAATTCAGCAGGAAATAGCCATCAGTATCCCCTTAGTGTCTGACAGACAGGATCTCTCTGTGCTGCAGAGCGAGTATGCTGAAGAGGACACAATCTATCAACTCAAGATCAAGGATcttcataaaaaatattcatatattcgGAAGACGCGACCTGATGGAAATTGTTTCTACAGAGCTTTTGGCTTTTCACATTTGGAGTCACTACTGGATGATGGCAAAGAGCTACAGAAGTTTAAAGCAGTGGCAGCAAAGAGCAAACTGGATCTTGTGAACCAGGGCTTTACTGAGTTCACTATTGAAGACTTTCACAACACAttCATGGACCTGATTGAGCTGTGTGAGAAGCAGCCAGCCCTCGGGGAGTTGCTGAGCTCCTTTAATGACCAGAGTGTGTCGGACTATGTGGTGGTTTACCTGCGGCTGCTCACCTCCGGCTATTTGCAGAGAGAGCATGCCTTCTTCCAGCACTTCATAGAGGGAGGACGTTCGGTCAAAGAATTCTGCCAGCAGGAGGTGGAGCCAATGTCCAAAGAAAGTGACCACATCCACATCATAGCCTTAGCACAGGCATTGAATGTGTCCATACTGGTGGAATACATGGACCGAGGGGAGGGTGGCACAGTTAACCACCACATTTTCCCAGAGGGCAGTGAGCCACGTATCTTCCTCCTCTATCGACCAGGTCATTATGACATCCTGTACAAATAAATGTGCAACTTCAGTACCATGGTGGAGAATACACCAGAGAAATGGCCATGATTTTTCATGCATCTCTGTGTGATGGTGACACCATGGTATTGCAAAATATGTACAATGAACATCACAAAACTTTCCTCTTATTATGAAGCCCcctaatgaattaatgaatgagtaAAAGTAAGCAGTGATCCAGCATTAGGGTTGTacagtttttgttttcctttgtgGTTGTAAATGTTATCAACTTGCTTTTAGTTactttttttggttgtttgttatGCTGCGTTTCATGAGTTTTATTAAAGGGATTTTCACCTTA

Function

symbol description
otub1 Enables ubiquitin binding activity; ubiquitin protein ligase binding activity; and ubiquitin-like protein-specific protease activity. Involved in cellular response to DNA damage stimulus; negative regulation of nitrogen compound metabolic process; and protein K48-linked deubiquitination. Located in extracellular exosome. Biomarker of IgA glomerulonephritis and lupus nephritis.

NR:

description
ubiquitin thioesterase OTUB1

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K09602 OTUB1; ubiquitin thioesterase protein OTUB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936350.2 True 1216 mRNA 0.45 7 16649185 16653787

Neighbor

gene id symbol gene type direction distance location
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding downstream 64652 16566064 ~ 16584533 (-)
LOC113539955 LOC108267556 coding downstream 85048 16552388 ~ 16564137 (-)
LOC117596996 NA coding downstream 113299 16528806 ~ 16535886 (-)
zgc:103586 cda,zgc:103586,LOC108267558,LOC108434617,LOC105907191,LOC107597094,LOC107683547,LOC104927619 coding downstream 134337 16506973 ~ 16514848 (-)
LOC113540033 NA coding downstream 144636 16498973 ~ 16504549 (-)
fam113 LOC108268071,LOC108434623,LOC107741458 coding upstream 2153 16655940 ~ 16661187 (-)
adad2 LOC108267669 coding upstream 9342 16663129 ~ 16669417 (-)
rcor2 rcor2,LOC107588183,LOC107668449,LOC107749809 coding upstream 61418 16715205 ~ 16726855 (-)
arl2 arl2,LOC107588185,LOC107668402 coding upstream 109079 16762866 ~ 16768038 (-)
gpha2 gpha2 coding upstream 152073 16805860 ~ 16808136 (-)
G65700 NA non-coding downstream 42593 16606007 ~ 16606592 (-)
G65508 NA non-coding downstream 197293 16451677 ~ 16451892 (-)
G65494 NA non-coding downstream 217667 16431136 ~ 16431518 (-)
G65493 NA non-coding downstream 219827 16429143 ~ 16429358 (-)
G65491 NA non-coding downstream 221778 16427201 ~ 16427407 (-)
G65715 NA non-coding upstream 21473 16675260 ~ 16684591 (-)
LOC117597072 NA non-coding upstream 74904 16728691 ~ 16735897 (-)
G65718 NA non-coding upstream 82366 16736153 ~ 16737913 (-)
G65722 NA non-coding upstream 149408 16803195 ~ 16804254 (-)
G65809 NA non-coding upstream 283426 16937213 ~ 16937420 (-)
bmp15 LOC108267203 other downstream 43468 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 54680 16592562 ~ 16594505 (-)
tnfsf12 tnfsf12 other downstream 222561 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 577493 16054528 ~ 16071692 (-)
smim20 NA other downstream 657200 15973579 ~ 15991985 (-)
G66053 NA other upstream 746807 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 785690 17439477 ~ 17444188 (-)
G66281 NA other upstream 939961 17593748 ~ 17634868 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 1138439 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 2396363 19050150 ~ 19155221 (-)

Expression


Co-expression Network