slc7a7 (slc7a7,LOC107558406,LOC107738042,LOC107683525,LOC107731885,LOC107574338)


Basic Information

Item Value
gene id slc7a7
gene name slc7a7,LOC107558406,LOC107738042,LOC107683525,LOC107731885,LOC107574338
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16108976 ~ 16120319 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936351.2
AAGTCCATCAGCTGATCAGCCTTCAGTAGCTGCACCTTCAAACATAAgcgcttgagagagagagagagagagagagaaagagagagagctgacaAGCTGTACAGGACAGGAGCACAGGAACCAAGACTGACTCCACTCTGTCATTAAATTCTCAAAATGGCTTTTAAATCTCTGTCATTCTTCTTAGCTAACGTGAATGAGAAGTAAAAGAGCGGAAACAAACAGTGCTGATTCACCGAAGAGCCACGAGCCTTCCGCTTTACCGTACCGTTATTCAAGATGTCACTTCAAGACGGCTAACTTGGACTTAATCTGACTTTCataaaacatttgaattttaTAAAATTGACTGACAGCAAGTAGGTCCAGTCAGCATCTCAGTCATCCACCATTCTACTAATCTCATGACAAAATGGCCACCTATAGTCCTGCCTCGACACAAGAATCTTCCCCAGAGGTAACCAGTGGTAACCTGAAGGGAAGTGGTTCTCAGGAGTCAATGAAACTAAAGAAAGAGATCTCCCTGATCAATGGTGTCTGCCTAATTGTGGGGAACATGATTGGTTCAGGCATCTTCGTCTCACCTAAGGGTGTGCTGATTTATAGCGCTTCCTATGGCTTATCATTGGTAGTGTGGACTATTGGTGGAATTTTCTCAGTGTTTGGGGCTCTGTGTTATGCTGAGCTGGGAACCACTATTACCAAGTCTGGAGCCAGTTATGCCTACATCCTGGAGGCCTTTGGAGGTTTCATGGCCTTCATTCGTCTTTGGACATCTCTCCTCATCATCGAGCCCACCAGCCAGGCTGTGATAGCTATTACTTTTTCTAACTACATGGTGCAGCCGATCTTCCCTACATGTATTGCACCTTACGTGGCCAATCGCTTGTTAGCTGCAGCCTGCATATGTTTGCTGACCTTTGTGAACTGTGCCTATGTGAAGTGGGGGACTCGTGTACAGGACTTTTTCACCTATGCTAAAGTCATCGCTCTCATTGCTGTTATCATCACAGGCCTTGTCAAGATATTCCAGGGTTACACACAGAATTTCGAGGGGTTGTTTGAAGGCTCGACCCAGGACCCTGGTGATGTGGCTCTAGCGCTGTACTCAGCTCTGTTCTCTTACTCGGGCTGGGACACCCTCAACTTCGTCACTGAGGAGATCAAAAACCCTGAGAGGAACCTGCCACTGGCCATTGCCATCTCCATGCCCATCGTCACTGTGATCTATATCTTGACCAATGTGGCCTACTATACTGTTCTGCCAATCCCTGCTATTCTGGACAGTGATGCTGTAGCTGTGACATTTGCAGATCGAGTATTTGGGATATTTAACTGGACAATCCCACTCGCTGTCGCATTGTCCTGCTTTGGAGGATTAAATGCGTCTATCTTGGCTGCCTCAAGGCTGTTCTTCGTGGGCTCCAGAGAGGGCCACCTGCCTGACTACCTGTGCATGATTCACGTTAGCCGTTTCACCCCTATCCCTGCCCTGCTCTTCAATGGTGCCATGGCTCTGGTGTACTTGTGTGTGGAGGACATCTTTAAGCTGATCAACTACTACAGCTTCAGCTACTGGTTCTTCGTTGGTCTATCCATCCTGGGTCAGCTGTACCTGCGCTGGAAACAGCCAGACAGACCACGCCCACTGAAGCTCAGTATTATCTACCCAATTATTTTCTGCCTTTGCACCATCTTCCTTGTGGTGGTCCCAATCTATAGTGACACCATCAACTCTTTGATTGGCATCGCAATCGCCCTATCAGGCGTCCCCGTATACTTTCTGTGCTGCTATACACCAGCCTCCCGTAGACCACTGTGGCTTCGCAAATTTATTGCATCATCCGGCTTGCTGATTCAGAAGGTTTGCTTTTGTGTGCTTACTGAGATGGACACTGATGAAGGAAAAATGCAGTAGAATGGGACTGATAAACATGGTTATATGGTACAGAGATTTCCCCATGATGTGGTTAGAATGATTGACAAGTAACACCCAGTAGGTCATTTGATTGAGGTAACAAGCTCTTTGGGTACTGTTTTATGCAGATACCTGAAAGACCATTcttaaaaacatacacattcCTTGTgggaaaaataaatgttcatttccTATTGCAAATAGTTTATGATGACTTGTATATTCTCACTTGTTTTCAAGTTCTCAGGATTTTTCAGCCtattaaattttaattcaaGGGTGCCCAGGTTTAGATCCATGTCCTAAATGTAGGACACGAGGCTCCAATACTCACAGCCCACAGAAACCATTTAGCTCAGCCAGTTGTTGGACATCTCTGGTTTTATATTTGAAAGTGGAAGTAAATGAACTCGAAAAGAGACCGATAGAACAATAGCAATGATAACACTACAATTATACAGTGAAATTCAAGATTATGATAGATTCAGTGTTCATATTGATCATATTCTTTACACTTGTTAATATATTATGTTCATAATACTGTCAAAGATTTTAACAGAACAAAACAGTCTGCACTGTTAACTGAAGGGctaaaatggaaaatgtaagTGGGCAAATTTTGCTTAAAGGAAGCTAAAGGTATTGTGAGAATtggaatagattttttttttaacattatacaCGATATCCCAAATGGACTACAGCAGTTTCCAAGATTCCACACTTAACCCAAAACAATTAAACCAGTGCCCTTAACATGCTTGACAAAGTTTAACCACTGATTAATGGACCAGTGAATGTTGCCTTCAAACAGTAGCATTGCTGATTGAGATTCTCTTCACAACATTCACTAAATCAgaaatcaaaataattaaatttcaaaataaatttaaaacatcaacatcatcaaaaAATGTTATagataaagtaataataaaaatgtagtgaCTATTTTGGCAACCCTGCAGGTTATTTTGGGACTCCCTTTATACTTCCTTGCTGGAATATGAAATACTACCTATATTATATTTTCCTAGTTTGTCCATTAAAATATGTGCCAACAGTGTGAGTATTGGATTATTTTGGTCAGTTGTTCAAGCAGCAGTATTCTTATGTGAAATAGgactaaaaaataaaagagtaaaagatATAGAATAGTTGATTAGGTAAAAATGCAGACTGCCATTATAAGAAGATATAATTTGTACTGAAGCTTCAGATTTATCTTCAGATTTATTTACACCATATTTATGTGcaatggattttaaataaaaggtcTCCTAATTA
>XM_026936352.2
GAAGTCCATCAGCTGATCAGCCTTCAGTAGCTGCACCTTCAAACATAAgcgcttgagagagagagagagagagagagaaagagagagagctgacaAGCTGTACAGGACAGGAGCACAGGAACCAAGACTGACTCCACTCTGTCATTAAATTCTCAAAATGGCTTTTAAATCTCTGTCATTCTTCTTAGCTAACGTGAATGAGAAGTAAAAGAGCGGAAACAAACAGTGCTGATTCACCGAAGAGCCACGAGCCTTCCGCTTTACCGTACCGTTATTCAAGAGAGCTTATCAGTGTTGGCTGGACCTTGCCCTCGCTCAGGTCTATAAGACATCAGGAAGCAGCAGTTCTCACTCCTTTTCCTAGAGGCCTTACCTGTTCACCTCCTGCTGTATGTCACTTCAAGACGGCTAACTTGGACTTAATCTGACTTTCataaaacatttgaattttaTAAAATTGACTGACAGCAAGTAGGTCCAGTCAGCATCTCAGTCATCCACCATTCTACTAATCTCATGACAAAATGGCCACCTATAGTCCTGCCTCGACACAAGAATCTTCCCCAGAGGTAACCAGTGGTAACCTGAAGGGAAGTGGTTCTCAGGAGTCAATGAAACTAAAGAAAGAGATCTCCCTGATCAATGGTGTCTGCCTAATTGTGGGGAACATGATTGGTTCAGGCATCTTCGTCTCACCTAAGGGTGTGCTGATTTATAGCGCTTCCTATGGCTTATCATTGGTAGTGTGGACTATTGGTGGAATTTTCTCAGTGTTTGGGGCTCTGTGTTATGCTGAGCTGGGAACCACTATTACCAAGTCTGGAGCCAGTTATGCCTACATCCTGGAGGCCTTTGGAGGTTTCATGGCCTTCATTCGTCTTTGGACATCTCTCCTCATCATCGAGCCCACCAGCCAGGCTGTGATAGCTATTACTTTTTCTAACTACATGGTGCAGCCGATCTTCCCTACATGTATTGCACCTTACGTGGCCAATCGCTTGTTAGCTGCAGCCTGCATATGTTTGCTGACCTTTGTGAACTGTGCCTATGTGAAGTGGGGGACTCGTGTACAGGACTTTTTCACCTATGCTAAAGTCATCGCTCTCATTGCTGTTATCATCACAGGCCTTGTCAAGATATTCCAGGGTTACACACAGAATTTCGAGGGGTTGTTTGAAGGCTCGACCCAGGACCCTGGTGATGTGGCTCTAGCGCTGTACTCAGCTCTGTTCTCTTACTCGGGCTGGGACACCCTCAACTTCGTCACTGAGGAGATCAAAAACCCTGAGAGGAACCTGCCACTGGCCATTGCCATCTCCATGCCCATCGTCACTGTGATCTATATCTTGACCAATGTGGCCTACTATACTGTTCTGCCAATCCCTGCTATTCTGGACAGTGATGCTGTAGCTGTGACATTTGCAGATCGAGTATTTGGGATATTTAACTGGACAATCCCACTCGCTGTCGCATTGTCCTGCTTTGGAGGATTAAATGCGTCTATCTTGGCTGCCTCAAGGCTGTTCTTCGTGGGCTCCAGAGAGGGCCACCTGCCTGACTACCTGTGCATGATTCACGTTAGCCGTTTCACCCCTATCCCTGCCCTGCTCTTCAATGGTGCCATGGCTCTGGTGTACTTGTGTGTGGAGGACATCTTTAAGCTGATCAACTACTACAGCTTCAGCTACTGGTTCTTCGTTGGTCTATCCATCCTGGGTCAGCTGTACCTGCGCTGGAAACAGCCAGACAGACCACGCCCACTGAAGCTCAGTATTATCTACCCAATTATTTTCTGCCTTTGCACCATCTTCCTTGTGGTGGTCCCAATCTATAGTGACACCATCAACTCTTTGATTGGCATCGCAATCGCCCTATCAGGCGTCCCCGTATACTTTCTGTGCTGCTATACACCAGCCTCCCGTAGACCACTGTGGCTTCGCAAATTTATTGCATCATCCGGCTTGCTGATTCAGAAGGTTTGCTTTTGTGTGCTTACTGAGATGGACACTGATGAAGGAAAAATGCAGTAGAATGGGACTGATAAACATGGTTATATGGTACAGAGATTTCCCCATGATGTGGTTAGAATGATTGACAAGTAACACCCAGTAGGTCATTTGATTGAGGTAACAAGCTCTTTGGGTACTGTTTTATGCAGATACCTGAAAGACCATTcttaaaaacatacacattcCTTGTgggaaaaataaatgttcatttccTATTGCAAATAGTTTATGATGACTTGTATATTCTCACTTGTTTTCAAGTTCTCAGGATTTTTCAGCCtattaaattttaattcaaGGGTGCCCAGGTTTAGATCCATGTCCTAAATGTAGGACACGAGGCTCCAATACTCACAGCCCACAGAAACCATTTAGCTCAGCCAGTTGTTGGACATCTCTGGTTTTATATTTGAAAGTGGAAGTAAATGAACTCGAAAAGAGACCGATAGAACAATAGCAATGATAACACTACAATTATACAGTGAAATTCAAGATTATGATAGATTCAGTGTTCATATTGATCATATTCTTTACACTTGTTAATATATTATGTTCATAATACTGTCAAAGATTTTAACAGAACAAAACAGTCTGCACTGTTAACTGAAGGGctaaaatggaaaatgtaagTGGGCAAATTTTGCTTAAAGGAAGCTAAAGGTATTGTGAGAATtggaatagattttttttttaacattatacaCGATATCCCAAATGGACTACAGCAGTTTCCAAGATTCCACACTTAACCCAAAACAATTAAACCAGTGCCCTTAACATGCTTGACAAAGTTTAACCACTGATTAATGGACCAGTGAATGTTGCCTTCAAACAGTAGCATTGCTGATTGAGATTCTCTTCACAACATTCACTAAATCAgaaatcaaaataattaaatttcaaaataaatttaaaacatcaacatcatcaaaaAATGTTATagataaagtaataataaaaatgtagtgaCTATTTTGGCAACCCTGCAGGTTATTTTGGGACTCCCTTTATACTTCCTTGCTGGAATATGAAATACTACCTATATTATATTTTCCTAGTTTGTCCATTAAAATATGTGCCAACAGTGTGAGTATTGGATTATTTTGGTCAGTTGTTCAAGCAGCAGTATTCTTATGTGAAATAGgactaaaaaataaaagagtaaaagatATAGAATAGTTGATTAGGTAAAAATGCAGACTGCCATTATAAGAAGATATAATTTGTACTGAAGCTTCAGATTTATCTTCAGATTTATTTACACCATATTTATGTGcaatggattttaaataaaaggtcTCCTAATTA
>XM_034303659.1
TATTCATTCTCCTTTGCAAGCTACTAAGCCCATTAGGTGTGTCATGTACTCGTAGAAAGCAGAAGTCCATCAGCTGATCAGCCTTCAGTAGCTGCACCTTCAAACATAAgcgcttgagagagagagagagagagagagaaagagagagagctgacaAGCTGTACAGGACAGGAGCACAGGAACCAAGACTGACTCCACTCTGTCATTAAATTCTCAAAATGGCTTTTAAATCTCTGTCATTCTTCTTAGCTAACGTGAATGAGAAGTAAAAGAGCGGAAACAAACAGTGCTGATTCACCGAAGAGCCACGAGCCTTCCGCTTTACCGTACCGTTATTCAAGATGTCACTTCAAGACGGCTAACTTGGACTTAATCTGACTTTCataaaacatttgaattttaTAAAATTGACTGACAGCAAGTAGGTCCAGTCAGCATCTCAGTCATCCACCATTCTACTAATCTCATGACAAAATGGCCACCTATAGTCCTGCCTCGACACAAGAATCTTCCCCAGAGGTAACCAGTGGTAACCTGAAGGGAAGTGGTTCTCAGGAGTCAATGAAACTAAAGAAAGAGATCTCCCTGATCAATGGTGTCTGCCTAATTGTGGGGAACATGATTGGTTCAGGCATCTTCGTCTCACCTAAGGGTGTGCTGATTTATAGCGCTTCCTATGGCTTATCATTGGTAGTGTGGACTATTGGTGGAATTTTCTCAGTGTTTGGGGCTCTGTGTTATGCTGAGCTGGGAACCACTATTACCAAGTCTGGAGCCAGTTATGCCTACATCCTGGAGGCCTTTGGAGGTTTCATGGCCTTCATTCGTCTTTGGACATCTCTCCTCATCATCGAGCCCACCAGCCAGGCTGTGATAGCTATTACTTTTTCTAACTACATGGTGCAGCCGATCTTCCCTACATGTATTGCACCTTACGTGGCCAATCGCTTGTTAGCTGCAGCCTGCATATGTTTGCTGACCTTTGTGAACTGTGCCTATGTGAAGTGGGGGACTCGTGTACAGGACTTTTTCACCTATGCTAAAGTCATCGCTCTCATTGCTGTTATCATCACAGGCCTTGTCAAGATATTCCAGGGTTACACACAGAATTTCGAGGGGTTGTTTGAAGGCTCGACCCAGGACCCTGGTGATGTGGCTCTAGCGCTGTACTCAGCTCTGTTCTCTTACTCGGGCTGGGACACCCTCAACTTCGTCACTGAGGAGATCAAAAACCCTGAGAGGAACCTGCCACTGGCCATTGCCATCTCCATGCCCATCGTCACTGTGATCTATATCTTGACCAATGTGGCCTACTATACTGTTCTGCCAATCCCTGCTATTCTGGACAGTGATGCTGTAGCTGTGACATTTGCAGATCGAGTATTTGGGATATTTAACTGGACAATCCCACTCGCTGTCGCATTGTCCTGCTTTGGAGGATTAAATGCGTCTATCTTGGCTGCCTCAAGGCTGTTCTTCGTGGGCTCCAGAGAGGGCCACCTGCCTGACTACCTGTGCATGATTCACGTTAGCCGTTTCACCCCTATCCCTGCCCTGCTCTTCAATGGTGCCATGGCTCTGGTGTACTTGTGTGTGGAGGACATCTTTAAGCTGATCAACTACTACAGCTTCAGCTACTGGTTCTTCGTTGGTCTATCCATCCTGGGTCAGCTGTACCTGCGCTGGAAACAGCCAGACAGACCACGCCCACTGAAGTGACACCATCAACTCTTTGATTGGCATCGCAATCGCCCTATCAGGCGTCCCCGTATACTTTCTGTGCTGCTATACACCAGCCTCCCGTAGACCACTGTGGCTTCGCAAATTTATTG

Function

symbol description
slc7a7 Predicted to enable L-amino acid transmembrane transporter activity and basic amino acid transmembrane transporter activity. Acts upstream of or within microglia development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; myeloid cell; and pancreatic D cell. Used to study lysinuric protein intolerance. Human ortholog(s) of this gene implicated in lysinuric protein intolerance. Orthologous to human SLC7A7 (solute carrier family 7 member 7).

NR:

description
Y+L amino acid transporter 2-like

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13867 SLC7A7; solute carrier family 7 (L-type amino acid transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936351.2 False 3205 mRNA 0.41 10 16109038 16120319
XM_026936352.2 True 3317 mRNA 0.42 11 16109037 16120319
XM_034303659.1 False 1832 mRNA 0.48 9 16108976 16118843

Neighbor

gene id symbol gene type direction distance location
si:ch211-212k18.5 sall2 coding upstream 1239 16098883 ~ 16107737 (+)
ttc5 ttc5,LOC107738047,LOC107683587 coding upstream 16516 16085677 ~ 16092460 (+)
htra3b htra3,LOC107757896,LOC107707797,LOC107660743,LOC107661977,LOC107549726 coding upstream 58348 16040205 ~ 16050628 (+)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding upstream 108031 15992175 ~ 16000945 (+)
cckar cckar coding upstream 192055 15904355 ~ 15916921 (+)
casp23 NA coding downstream 4697 16125016 ~ 16129309 (+)
LOC113540526 LOC108267491 coding downstream 15045 16135364 ~ 16139870 (+)
LOC117597111 LOC108267494 coding downstream 25105 16145424 ~ 16152437 (+)
LOC117597006 LOC108267494 coding downstream 77382 16197701 ~ 16204202 (+)
tkfc tkfc coding downstream 136346 16256665 ~ 16264197 (+)
G65199 NA non-coding upstream 45515 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 53831 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 107515 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 238205 15869198 ~ 15870771 (+)
LOC117597190 NA non-coding upstream 552052 15506292 ~ 15556924 (+)
G65335 znf638 non-coding downstream 103099 16223418 ~ 16231115 (+)
G65382 NA non-coding downstream 271810 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 310142 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 311626 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 394318 16514637 ~ 16514841 (+)
LOC113540079 sh3tc1 other upstream 68992 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1450040 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 1839636 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2389522 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2546710 13558623 ~ 13562266 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 189894 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 247637 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1215178 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1489173 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1879839 18000158 ~ 18010962 (+)

Expression


Co-expression Network