casp23


Basic Information

Item Value
gene id casp23
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16125016 ~ 16129309 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936354.2
AAACTCGATTTGCGTTTTGCAACGGAAGAACTGTTCGTCGTGCTCATGTATGCTGCCGGCTCAAAGGTGTGAAATAGTGATTTTACAATCGTGATATCTAATAAGgatatataatattgtaatattttcgAAGTGATCGGAAGGGGTGAAATTAAAACTTCTAGcacaaaaaaatgtcacaacCCAAGGAAGAGGACAGAGACTCAGAAGATGCTGCACCTCTACCACATTTCCGTAACCTAAGAATCTCAGGTGATGAACAGAAAAGAAAGTCTGATGTCTTGCCTGGAAAAACTGCTGTTTTGTCCTGTGGTCATCAAATGCCATTGGATTACTTGATTTCATGGTGCAAGTACTATCTAAAGCAGGAGAAGACTGAATTCACTTGCCCAAGATTTGATGAGTACAAGAAGGGTATATGTGGCACAAAATTCTCTTATCAGGACATGTGCCATACAGTTCCACTAACTCCCTCACTGAAGGAATTCTTCGAAGAGAGACTTGGGGAGCTAACTGCAGCAAGATTCTGTGAATTTAAAGCTTGCCCAGGATGCCAGTCGTATGTGGAGAGAGCTGATCAGAAGAACCTGTGTGTCCACTGTACTGTATGCACTGCCAGGATGGGATGCTCCTATGAGTTCTGCTGGAAATGCAGGAGGAAATGGAAAGGAGCAGCACAAAATAATGTGCACTGTGGCTACAATgactgcagacagacagagACTTctcaaaaaaagagagatttgaTAAAGTTATGTCAGCCTGCATTCAAGATACAAAAGCTTCAGACAGAAGAGATCTATTCAACAAAGGAGAAATCCAATGACAGACAGCGACTGGCTATGATCATCAACAACGTTGAATTCAGAGTAAAGAACCTTAATCGGAGGGGAGCAGAGAAGGATGAAGAGAGTATGAAGTCTCTGCTTGAAGCCTTGGGTTATGGTGTAATCATACTGAATGACCTGTCTGCAGCgGGGATGGAGGCTGCCTTGAGAGACTTCTCACAACATAAAGAACACAGATATTCAGACAGCACATTTTTTATCATGATGTCCCACGGTGGACCTGATGGAATTTATGGCATTAATTTTGATGACAAAGAAGGTGACATTCTCCCTGTGGACAGAATCTTCCACTATCTCGGCTCTGAGAACTGCCCCGGACTAACAGACAAGCCGAAAATCATTCTGATTCAGGCATGCAGAGGAGATAAAGAAGGCCATGTGTGGGTATGTGATGGTGTAAGGTccaataaaggaataaaacaacaccGTGAGAAAGATTTTGCCTGCTTCAGATCCTGCACACCAGACACTGTATCCATCAGGAATACTGGCTCTGGTTCATTATTCATTCAGAGCCTTGTTAAAATCTTCAGTGAACACGCTCATGAGGACGACATAATGGAACTGTTCAGAAAGGTTGCTCACTGGTTTGAAAAAGCAGCAAAGGAAGATGAATTTCCCTATCAAATGCCAAGTTTGGACAGAACTACtcttgtaaataaattttacctGTTTCCTGGACTTTGACACAAGAGCTCAGGTTGCTGCCATTTCCTTAAGAATTAATTGGTCTTTGTAATATAAGGGTTGAATGTTTGAATTGAAGTAATATTTCCCTTATTATGTTATACAATAAATATGAACTGTACACACCTATTCAGTGCAGATGAAAACATTTCTATATCTTTAACATGGAAGAGACACCAATAAGCTGCTCTGATGTACACCCCATCTAAGTACAAGAAGGACTTTTTGCTCAGAGGTTTGTGTTTCTTCATCAAGAGTTAAAGGTTTGATAGACAAACTTGTCTTTCATGCAGAAAAACATTCTTTTCTGTAGGAATCATTCATTTTATATGAACAAAACTGTGGGTACAATGGGTTAATTTTTGTATAGAAAACCTGGGATCTCTCTACAATATTTTGCAGAAGGATGATGAAAATGAAGCAGTaatcttaaataaatctttatatcTTCATCTTTATTGAGTGTTcagctatattttatttttcatgttcctAGAGGCTATATGTAGAGTGGCCAATAAATGAGCCTttttgagttgtcccaa

Function

GO: NA

KEGG:

id description
K01370 CASP1; caspase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936354.2 True 2080 mRNA 0.40 11 16125016 16129309

Neighbor

gene id symbol gene type direction distance location
slc7a7 slc7a7,LOC107558406,LOC107738042,LOC107683525,LOC107731885,LOC107574338 coding upstream 4697 16108976 ~ 16120319 (+)
si:ch211-212k18.5 sall2 coding upstream 17279 16098883 ~ 16107737 (+)
ttc5 ttc5,LOC107738047,LOC107683587 coding upstream 32556 16085677 ~ 16092460 (+)
htra3b htra3,LOC107757896,LOC107707797,LOC107660743,LOC107661977,LOC107549726 coding upstream 74388 16040205 ~ 16050628 (+)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding upstream 124071 15992175 ~ 16000945 (+)
LOC113540526 LOC108267491 coding downstream 6055 16135364 ~ 16139870 (+)
LOC117597111 LOC108267494 coding downstream 16115 16145424 ~ 16152437 (+)
LOC117597006 LOC108267494 coding downstream 68392 16197701 ~ 16204202 (+)
tkfc tkfc coding downstream 127356 16256665 ~ 16264197 (+)
si:dkey-9k7.3 LOC108267726,LOC108434601,LOC103037388,LOC105895467 coding downstream 134945 16264254 ~ 16277494 (+)
G65199 NA non-coding upstream 61555 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 69871 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 123555 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 254245 15869198 ~ 15870771 (+)
LOC117597190 NA non-coding upstream 568092 15506292 ~ 15556924 (+)
G65335 znf638 non-coding downstream 94109 16223418 ~ 16231115 (+)
G65382 NA non-coding downstream 262820 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 301152 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 302636 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 385328 16514637 ~ 16514841 (+)
LOC113540079 sh3tc1 other upstream 85032 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1466080 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 1855676 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2405562 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2562750 13558623 ~ 13562266 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 180904 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 238647 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1206188 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1480183 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1870849 18000158 ~ 18010962 (+)

Expression


Co-expression Network