si:dkey-9k7.3 (LOC108267726,LOC108434601,LOC103037388,LOC105895467)


Basic Information

Item Value
gene id si:dkey-9k7.3
gene name LOC108267726,LOC108434601,LOC103037388,LOC105895467
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16264254 ~ 16277494 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936367.2
AGATGTCTTTCAGACTGTGGATtctgttattaaataaaatttggtAGCACAAATAAAGATTTCTTAACAAAACAATTATAGCTGTTGACACTTAGAGGTAGCAAAGCTAGAGAAGTGCCATAGAAACTCTTTCACACCTGTGTGCACAGTTCTTGAGTGTGAGTTTAAATATAGAGTCAGGAAGTAAAGCAACCAGCACAGATGGAATACAGACCACTGGGACCTTGAATCAGAGatacttgttttaatttttacttgAAGTTTGCCTTTCTCAGGTTCTTGCACTTTCTCACTCTATCATTTTCTTACTTCCTGCTtctttatgcacacacacacatagaggagGCAGCATGAGAAGTGGCACACGCTGAGTAACAAACCGACCTGAAAACTACCAGCATAAAGATGGAGTTTGCCTGCAGTCATGTTGTCTGTAACTGGAGGCCTGAGAGTCTAGCAGAAGGTCTTTCCTCCACACTGCCCTGTGGTTTGTccagaaaaaaatcagaacatcCTTATGACAACCGCATTGCTGTCATTCCAAAACCTAGCCCTCCTTTAACACCACCACCTGTACCTCCTCGTCGCtcaacacagaaacacacacgaCCAATTTCAATGCCACCTCCAGTACCGCCTCGAGGATTGGAGGGTAAAGGACAGGCCAGTATTAAAGCCAATGTCAACGTGGTGTTACTCAAAGTAGGGAGTCTTGTGGACATAAACAAAGCATCCAGTATACAGAGCATTCAGAAACCAGTGCACTGTGAGAAATGTAGAGCCGTCATGTCCTCTGTGAGCAACTCACAAACCAGCCCAAATACATCAACATGGTCTTGCGAGTTTTGCGGTAATCAGAATGTCCTCACTCAGAGTGAGTTGAAAATGGGCCGTTCACCTCTGTGGACACCGCCAGGCAGAGATGTGCTCTATGTGGATGATGAGATAGACACAGATTATGTGAACCTAGAGGACATGCTGGTGGTCTTCTGTGTGGACATTTCTGGTAGCATGAGCGTCACATCAGAGGTGTCTCCTGGTAACAGCATGAGATCACCCACCTATGTATCACGACTGCAGgGTGTCCAAGAGGCCCTACAGTTGGCACTGACCTCACTGCTAAAATCATCACCACACCGTCGTGTAGCACTGGTCACCTTTAATGATGAgGTAACAGTGTATGGGGATGGTACTGGAGTTCCTCTGTGTCTGCGTGACTGGGCTCTGGTAGACTATGATCATGTGAGAGAGCAGGGAGAGAagtacaccacaccacactgcaTTGCTGAGACCTTCCAGTGCCTCACGCAAAAAGTCAAAGAATTAAGAGAGCATGGAGCCACAGCGCTGGGTCCTGCAGCACTCGTCTCTGTTGCTATGGCCTCTCAGTTTGCAGGTTCAAAGGTCATAATTTGTACAGATGGACGGGCCAACATAGGCCTTGGCCAGTTAGAACAGGAATCTGCAGCTTCAGTATATTTCTACAACCAAGTAGCCAGTCATGCAGCAGAAAAAGGAGTGATTGTGTCAGTGATGACATTTGAGGAAGAGGACTGTAGTCTGGCAGAGGTTGGAAAACTAGCTGACCACACAGGAGGCAGGaTCAACAGAGTCAACATTTGTACAGTTGGATCAGAAATTCAGACTGCGCTGGCTGACAACATCTTAGCAACTAATGTTGAGGCAACCCTGCTTGCACCTAATGGCGTGTATTACCCTTTTGAGGAGGACAACCACAGGCTGGTTAGAGAGATTGGAAATGTCACAAGTGGAGTGGAGATCACTTTCCAGTTTGCTGTCAAACCAGACAAAGTTGAGAGTTTCCAGAGAAGAGATAGAGTTCCCTTCCAGCTGCAGCTGTCTTTCAAAACTCGAGATTTGAAGAAAGTAACCAGAGTCATCACTCAGCAGAAGCGTGTGACCACCAGCAGCTGGGTGTGGGCAGGGAGCCTGAACATGGCTGTGCTGGGTGTTCACTGTGCCCAGCTATGTGCCCGACTCACCATGGAGGGCAGGATCCAGGAGGCTCAAAGTCAACTCAAAGCCCAGCAGGACCTCCTCAAAGACATCAGTGAACAGAAGCCAAGTCCTAAAGAAGAGAGTGTCTATGGAAACTGGATCAGTACCATGAGTATGATCTGTGAGGACCTGAACCCAGATACACAGGGTTTGTCAGATGAGGCAGCAAAAGTGGTGTACCAGATGAAGAGGGTGACAAGTGTGGGCCAGAGGGAGGAGAAAGCAGCTATGTTAGAAAGTTGAGCAGAAGGTGGACTTATTGTCAGAACAGCAGTGACTAACGTGACTAACAGCAGACCAGAAAACAGCTTGAACTCTCTGTGTATCagaaatggaatattttatCTCGTATGCTGCTGGTCAGTAGGTAGCGATCCTTGTTAACATCAGTAACTAAATTATGGAGGCTATAGGCAACTGTATTTATCTAAAGGttctaataaaatgtgttgttttaatatattgctgaacaaaaaaatatatctggATACACAACGATTTTCTCATTACAGTATCTGGACAAGGACATGACGCAGACATTGCTTCATTATGTCTCATTCTGTTATTAATAAGATCGTTTAAAGGTCTATCAGATAGTCCAAGTTTGGGCAAAATTGTTTTGGTTCAGTGGTGGCTTTCTAAAGCAGTTAGTATTTCATTAAgaacttttcatttaaatttttcgTGCAGTCATGTTTCAATAAATCCTAATTCACTGACTAACCTGGATTTTGCTGCAGACCGCACTGtggctcagtgtgtagtgttggtacctcacagctccagagtttgatcctgaggttactgtctgtgtagagttcttcatgttctccctgtgtctgtgtgagtttcttttacatatactatatggccaaatgtaggTGGACACCTGAgcctcacacccatatgtgagccttcctcAAActtttaccacaaagttggTAGCACACAAGTTTATAGAatttctttgtatgctgtagctttactgtagctttcccttcactggaactaaggggctcaaACTTGTTCCAGAATGGCAGTGCCCCTATGCACAGAGCGAggtctaaatctggaataggatctTTTAAAAAGGACATAtaggtatgatggtcaggtatctgcaaacttttggccatagtgtACTCTGCAATAAAAAGACATATTTCAAAA

Function

NR:

description
circularly permutated Ras protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936367.2 True 3189 mRNA 0.45 19 16264254 16277494

Neighbor

gene id symbol gene type direction distance location
tkfc tkfc coding upstream 57 16256665 ~ 16264197 (+)
LOC117597006 LOC108267494 coding upstream 60052 16197701 ~ 16204202 (+)
LOC117597111 LOC108267494 coding upstream 111817 16145424 ~ 16152437 (+)
LOC113540526 LOC108267491 coding upstream 124384 16135364 ~ 16139870 (+)
casp23 NA coding upstream 134945 16125016 ~ 16129309 (+)
LOC113539958 LOC108434586 coding downstream 1496 16278990 ~ 16284284 (+)
ovol1a LOC108267728,LOC108434587,LOC103038355 coding downstream 14325 16291819 ~ 16298721 (+)
mus81 mus81 coding downstream 22447 16299941 ~ 16310157 (+)
fis1 fis1,LOC108434607 coding downstream 65850 16343344 ~ 16349401 (+)
cldn15a cldn15,LOC103041259,LOC108434589 coding downstream 75267 16352761 ~ 16355963 (+)
G65335 znf638 non-coding upstream 33139 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 200793 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 209109 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 262793 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 393483 15869198 ~ 15870771 (+)
G65382 NA non-coding downstream 114635 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 152967 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 154451 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 237143 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 292193 16569687 ~ 16577737 (+)
LOC113540079 sh3tc1 other upstream 224270 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1605318 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 1994914 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2544800 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2701988 13558623 ~ 13562266 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 32719 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 90462 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1058003 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1331998 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1722664 18000158 ~ 18010962 (+)

Expression


Co-expression Network