tkfc (tkfc)


Basic Information

Item Value
gene id tkfc
gene name tkfc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16256665 ~ 16264197 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936368.2
GTATGGGCGGAAGTGTGAACTGAGCGAAAAACCAAACctgcatactaccatactaGTATGACAAAGTAGTACGATACCAATGCAAGTCTCTCTAGGCTACTACTTAGTGCAGTAGTATACACCTTTGGCCAGTTCTGTTTTTTGAACACATACTACGGAGGCAAATGGAGGTACACAGGAAGCTGCTGAACTCTGTGGAGCGGTGTGTGGATGAAGCCCTGGAGGGCATAGTGAGCAGCAATGGGGGACTGATGCTCCTGAGGGGTCACAGGGTGGCACTGCGCTCTGACCTCCACAACCTGAAGGGAAAAGTGGCACTGATCTCTGGGGGTGGCTCAGGACATGAACCTGCACATGCCGGCTACATTGGAAGAGGGATGCTATCAGCTGCTGTAGCAGGAGCGGTGTTTTCTTCCCCTCCTCCTGGCAGTATTCTGGCAGCCATCATGACCCTGTGGCAGTGTGGTACTTCAGGTGTCCTGCTGCTGGTTAAGAACTACACAGGTGACCGCCTGAACTTTGGCCTAGCTGCGGAAAAAGCACGGGCACAAGGAGTACCTGTGGACATGGTGGTTGTGGCTGATGACTGTGCTTTTAATCAGCCCAGCAAAGCAGGCAGGAGAGGACTCTGTGGAACTGTGTTTATTCATAAGCTGGCTGGAGCACTGGCTGAGGAAAGCTGTCCACTAGATGTGATTGTTACGAAAGTGTCAAAGGCAGTAAAAAACATTGGGACTCTGGGTGTCAGTCTGTCTCCATGCAGTGTGCCAGGATGCCTACCCACCTTTCAACTTCTGCCAGGAGATATGGAGCTAGGACTGGGAATCCATGGAGAGCCGGGCATTAAAAAGTCCAAGATGGCCTCTGCTGATGAGGTTGTCAAGACTATGATTGATCACATGACTGACCCTTCCAGCCAATCAcatctgccactgaaatcagGTGACAGTGTGGTCCTCTGTGTGAATAATCTTGGTGCTCTGTCCTGTTTGGAGATGGCTGTTGTCACCAGAGCTGCCATCAGCTGTTTAATGGGACGAGGCGTGCAGGTTGTCAGGGTAATGTCTGGCTCATTCATGACATCGCTGGAGATGGCGGGCGTGTCTCTGTCTTTCATGAGAGTGGATGAGGAGATACTCCGACTGTTTGATGCTAAAACCTCAGCGCCTGCCTGGCCCAACCTCAGCAGTGAGTGTTTAAGTGGGAGGAACCTGTATGTGGAACCCACAGCGAGACCAGCTGCCGCTGAGACAAAACCTGAACAAGGTCCATTTTCTTCTGTGGCATGTCTAGCCTTGGAATCCATTTGCAAAGCCCTCTTACAACGGAAAGAGGAGCTCAATGCCCTGGATCGCGCAGCAGGGGATGGAGATTGTGGGAGCACACATGCTCTTGCTGCTACTGCCATCAAAGAGTGGATGCAGACCACCACCGTGCCAGGAAGTCCGTGTCTACTCCTAACAGCCCTTGCTGGGTTGGTGGAGGAGAGAATGGGTGGATCTTCAGGAGCACTGTACAGTCTGTTCCTGACAGCAGCTGCTCCCCACCTAAGGGAAAGTTGTGATGGAAAAGACTGGGCTAAAGCTGTACAGGCTGGGACTGAAGCTATGAAAAGGTACGGAGGTGCTGCACCTGGTGACAGAACAATGcTGGATGCACTGTGCCCTGCAGTGGATGAGTTGATGAAATTATCCACGGCTTCTCCAGGTGGCCATATTGCTGTACTACAGGCAGCAGTGGAGAAAGCAGAGTTGGGTGCACAGTCTACCCGTGAACTCACTGCCAAAGCAGGTCGAGCGAGTTACATTGCATCTAAACAGCTGACTCAGCCTGACCCTGGCGCTGTGGCTGTAGCTGCCATTCTCCGAGCAGTGTTTGAAACTCTGAAAGGGAAGGACCAGTGATCTACACTGGTGTCATGGCATAAAACATGGATCAGAGAGGACGCTCTGCATTGTTGAGGGAAAGTCAAACTAATATACACAAGTACACTAGATCAGCTACAACAGAGAGCATTCCGAAATAATCATAGATAATTTAGTGACTAATTGCACTGAAAGAACAGTATTTGAGTTGTATTCATTTGTTGACTTACGATAATGTACCAATTCTTCTTTTATCATGGATTAAGTCGCCTATTAATGACTGAAACAGGATGATGCAATGATAGTGGAGAATGGTTTCTTACTGGCATAGAGTTTACTTTGTCTTATTGTTAGAGTTACATGCAGTGTACCATAATCAAATACTGAGTTTGTATCCTTATTGAAAACATAATCGCATAATTTAATCATCAGTGCATAAGTCATTCTAAATCAATGTGCCATTCAAGGAAGTTCCagtcaaaataatttaaaaatgtgaatcaAAGACCCCCATATTCTTTACTGGAGTTGAATGCACATTAACTGTTGAATTTTGTTCCTTTCCTGTAAAAGAAACCACACAGAAAGACTACTGTGATACttaatagtgattttttttttggatcattTAACATTGGTAACATTGtaaatgttataatatataaaaataaaatgaaataaattgaaatctattaaaa

Function

symbol description
tkfc Predicted to enable glycerone kinase activity. Predicted to be involved in glycerol catabolic process. Predicted to act upstream of or within glycerol metabolic process and phosphorylation. Predicted to be active in cytosol. Orthologous to human TKFC (triokinase and FMN cyclase).

NR:

description
PREDICTED: bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing)

GO:

id name namespace
GO:0006071 glycerol metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004371 glycerone kinase activity molecular_function

KEGG:

id description
K00863 DAK, TKFC; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936368.2 True 2563 mRNA 0.47 16 16256665 16264197

Neighbor

gene id symbol gene type direction distance location
LOC117597006 LOC108267494 coding upstream 52463 16197701 ~ 16204202 (+)
LOC117597111 LOC108267494 coding upstream 104228 16145424 ~ 16152437 (+)
LOC113540526 LOC108267491 coding upstream 116795 16135364 ~ 16139870 (+)
casp23 NA coding upstream 127356 16125016 ~ 16129309 (+)
slc7a7 slc7a7,LOC107558406,LOC107738042,LOC107683525,LOC107731885,LOC107574338 coding upstream 136346 16108976 ~ 16120319 (+)
si:dkey-9k7.3 LOC108267726,LOC108434601,LOC103037388,LOC105895467 coding downstream 57 16264254 ~ 16277494 (+)
LOC113539958 LOC108434586 coding downstream 14793 16278990 ~ 16284284 (+)
ovol1a LOC108267728,LOC108434587,LOC103038355 coding downstream 27622 16291819 ~ 16298721 (+)
mus81 mus81 coding downstream 35744 16299941 ~ 16310157 (+)
fis1 fis1,LOC108434607 coding downstream 79147 16343344 ~ 16349401 (+)
G65335 znf638 non-coding upstream 25550 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 193204 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 201520 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 255204 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 385894 15869198 ~ 15870771 (+)
G65382 NA non-coding downstream 127932 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 166264 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 167748 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 250440 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 305490 16569687 ~ 16577737 (+)
LOC113540079 sh3tc1 other upstream 216681 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1597729 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 1987325 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2537211 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2694399 13558623 ~ 13562266 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 46016 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 103759 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1071300 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1345295 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1735961 18000158 ~ 18010962 (+)

Expression


Co-expression Network