LOC113540120 (LOC108267808)


Basic Information

Item Value
gene id LOC113540120
gene name LOC108267808
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21337108 ~ 21350811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936370.2
TGTTTACTTTGACCAGTAAATGAGTCTGAATCAGCCTACACACTCTGGCAAATCCCCAGTGCTTCTTATGgctctttatgcaaatgaaggtAGCAGTTGATGTGCTGTTTGTATGCCAAAAGTTATAAGTACATATAACCAAAGTTAAGAGAACCTACCCAGTGAAGCTAAAACATGTGATTATATCATCATCTTGGAGCAAGAGTGAATTCTGAACGTTGACTGAACTTTTAAGAATTAGtcaatCTCCATTGGTAGTATGGGATGTTTGAGTTCTAGGGAAAAGGGTGGTGGTGTGGAACAAAGGCCAAAACCCCAACCCCCAGAAGTCAAAAGATACGCCACAGACCGAACTCAGAATTCATCATCACTGTTGCCTGGGCAGGTTCTGCAGAATGGGGATGCTGTATCCACAGACAGCAAGATTGTGATTGCATTATTCTCATACGAAGCCGAGAATAAGAATGAGCTAAGTTTCAAAAAAGGAGAGAAGCTCGTAATATTGGATGAGAATGGCGAGTGGTGGAAAGCAAAGTCACTTTCCTCTAGCAAAGTAGGATTAATACCTTCCAATTACATAAAGCTAGAAGAGAGCATGGACAACAAAGActGGTACTTTAAGAACATCAGTAGAATAGCAGCTGAGAGAGACCTACTGGCTCCTGCCAATAAACCAGGTGCCTTCCTCATACGCCAGAGTGAGACAACCGCAGGAAGTTATTCCATGTCAGTGAGAGACGTGGGTCCTAATGGCTCAGCTATGGTAAAGCATTATAAGATTCGCCTATTGGAAGATGGAGGATTTTACATCTCTCCAAGAATCACCTTCAAAACATTAGATGACCTCATTGCGTACTATCAGAAGCAGGCCAGTGGTTTATGTCAGCGATTAGGCAAACCATGTGTAAAACCTAAAAATGCAGTCCAGTGGGATGAAGATGCTTGGGAAATTGCCAAAGAATCTCTTCATATGATGAAGAGGCTTGGAGCTGGTCAGTTTGGTGAAGTCTGGTtagcaaCGTATAACAACACTACTAAAGTAGCAGTGAAGACCCTGAAGCCAGGCAGCATGTCAGTTGAAGCATTTCTGCAGGAGGCTAATTTGATGAAAACTCTACGGCATGACCGCCTTGTCCGCCTTTACGCCGTGGTCACCAAATCACAGCCCCTCTACATCATCACTGAATTCATGGCTAATGGGAGCTTGTTGGACTTTCTGAAAAGTCCACCAGGCAGAAAAATACGGCTGCCTAAACTGATTGACTTTGGAGCTCAAATTGCAGAAGGCATGGCGTACATCGAAAAGAAGAACTACATTCACAGAGACTTAAGAGCTGCAAACGTCCTCGTCAGTGAAAGCCTGCTCTGCAAGATTGCTGACTTTGGCCTGGCTAGGGTCATTGAGGACAATGAATATTCAGCCAGAGAAGGTGCTAAATTCCCCATTAAGTGGACTGCACCAGAAGCTATAAACTATGGTTCGTTCACTATCAAATCAGATATGTGGTCATTTGGCATCCTTCTCTATGAGATCGTCACCTATGGGAAAATCCCCTACACAGGTCTAAGCAACAGTGAAGTGATGGCACGAGTGCAGCGCGGGTATCGCATGCAGTGTCCTGATAACTGCCCATCTGAACTGTACGAGATCATGATTTCATGCTGGAAGGCCAAACCAGAGGAGCGGCCCACCTTTGACTACATGCAGAGTGTGCTGGAGGACTATTATACAGCCACAGAGGGCCAGTACCAGAGCCAGCCATGATACCATGCCAGATCCAAAACAGCCAAGAACATCatatagaattttattttttaataaacatgattGCCTCGACGCCCAGTGAGCAGGCTGAGGTCAAGTTTGCCAAGGAAACACTCCCTAGAATTgcacaaagaaagaagaaaccttgaaacaaagaaataagGAACTAAGATTCAGCAGGTGGAGCCTGtcctcctctgtgctgaaggaAGGCTGGTTGATCTCATTAAATGGACCCAATGCACATCAGTCAGCAaacaaggaagaaaaataactcattttttggctttttttttttttcaggtttgttAGTGATCAACATTAAAATTTGTGTGAGAAAGCTAAATGTAGATCAGTCCACCAACAGACGTTACTACTAGGAAAACCACGAAAATGTTCAAACAAAACTGCTCACAGCTCAGTCCAGTGTACAGATGTGATCCAGTTTAAAACACTCTCTGGCCGCTTTAAAAGGAATACCAGTACCTCTcccagttatccaatcagctaattatATGGCAGCAGCGCATTATACAAATTGAGGtccagatcaagagcttcagttaatgtttacattaaatattttattcgtGGAAACCATGATCTCattgactttgatcatggcctggttgttggtgccagacaggctggtcaCATGTTCAGGCAGATGGGCTCTAACAgatgatcacatttttttcccctgtcaaataggaatctgaggctacagtgggcacagactcgccaaaactggacaggttaagattggaaaaacattgccattgtctttttccagtcttcagcaaTCTGCCTCATGAGACACACATTGTGCAttcggagatgcttttctgctcaccatggttgcaaacagtggttatttgagatactgtagccttcctgtcagcagAAGagagtctggccattctcctctgaaggCATTTCTGCCCTATGTACAGATGCACCACAAAGTGGCTAGTGAATGTAGTCTGGAAAAGGATTGTGCTCCAAATGGTGGTTACTATTAACTTCTGAAAATAAGTTAACACCAAAATGTGTCCACAATGGTGTACAAGTGGAGACCATTTGAAGCAATGATGTTACATTTTACAGCCCAGAATTAGTAACCCAACCACCTTATGTTATACTATTGTAGGAATTTATATGAACCTTTTCAGTGCTCACAATTTTACTCTCAGAATACAAGATTGTTTGTGATAAAaagaatttattaaataaa

Function

NR:

description
PREDICTED: tyrosine-protein kinase Lyn-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936370.2 True 2999 mRNA 0.43 13 21337108 21350811

Neighbor

gene id symbol gene type direction distance location
LOC113540421 LOC108267573 coding downstream 88471 21235253 ~ 21248637 (-)
sdcbp sdcbp,LOC107660837,LOC107730132 coding downstream 103423 21227985 ~ 21233685 (-)
unm_hu7910 asph,unm_hu7910,LOC107730121,LOC107698672,LOC108436147 coding downstream 111124 21195948 ~ 21225984 (-)
nsmaf nsmaf coding downstream 148330 21168890 ~ 21188778 (-)
ank2b ank2,LOC103361685,LOC108436150,LOC108267515 coding downstream 176334 21012252 ~ 21160774 (-)
sox17 LOC108267806 coding upstream 25584 21376395 ~ 21379959 (-)
sox32 LOC108267240,LOC100698545 coding upstream 48744 21399555 ~ 21401268 (-)
mrpl15 mrpl15 coding upstream 63050 21413861 ~ 21417828 (-)
trnaa-ugc NA coding upstream 67357 21418168 ~ 21418239 (-)
LOC113540027 rgs20 coding upstream 76374 21427185 ~ 21430580 (-)
G68466 plag1 non-coding downstream 15962 21320818 ~ 21321146 (-)
G68186 NA non-coding downstream 533004 20803417 ~ 20804104 (-)
G68108 NA non-coding downstream 700909 20635904 ~ 20636199 (-)
G68107 NA non-coding downstream 701315 20635532 ~ 20635793 (-)
G68106 NA non-coding downstream 705398 20630166 ~ 20631710 (-)
G68495 NA non-coding upstream 56300 21407111 ~ 21408207 (-)
G68519 NA non-coding upstream 120821 21471632 ~ 21471839 (-)
G68520 NA non-coding upstream 122008 21472819 ~ 21473032 (-)
G68577 NA non-coding upstream 123776 21474587 ~ 21475776 (-)
G68585 NA non-coding upstream 146121 21496932 ~ 21501433 (-)
G68462 NA other downstream 7858 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 23211 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 511588 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1371257 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 1393274 19919480 ~ 19943834 (-)
LOC113539989 LOC108436138 other upstream 3808 21354619 ~ 21371010 (-)
G68760 NA other upstream 583715 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1278804 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1941237 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1980205 23331016 ~ 23346573 (-)

Expression


Co-expression Network