si:dkey-28a3.2 (LOC108267583)


Basic Information

Item Value
gene id si:dkey-28a3.2
gene name LOC108267583
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20485644 ~ 20496755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936377.2
GTGATGTTAAACCCAACCAAGTCAACGCTCCTCGTACCAAACGCTGTTACGAGCGCAGCATTTCGAAGAAGCATTCGCTGATCGCTTGTAAAAGCAGCAGGAAGACGCATTCGCCTGTTAGTTTTCCGGTGCACTGTCGCTTTAAGAGTGCTCTCCGTTTCCGCGTACACGCGCAGCAGCAGTAGGGCTCGAGCTCTCACATCCTGGTACTTTGCACTACATGGCAGCAGCGGGAGAGAAAGGGTGATCCGGGAAGTGAACCCCACTGTCCTATCTGGACTCCCGTCTGAGCGTCTGTAAACAGTCCAGGAAAGTTAAGCCTGATCGCCAGttgcaGGTTTTGCTCTTGGATGCTACTTTTGGAAGAATTGGAACTATGCTGCAGTCATTTTCTATAAGCCTAAATTTAACTAAACACAGGGAGGAAGACAgccacaaataaaatataatgtgacCTTGTTGCAGAGAAAGCATCTGTCTTAACAAGGGACACCTTCTTTGTAGGATTTGATGTGTACATCATTAAACTGTGGTGAGGGAGGAGGGAACAAACAGTAGGTATGTCTAAGACAACGACCTTGATGAGGCACCGATACCGGCCTGTGTCGGAATTCGATGAAGTCACTCTGGCCTCTAAAAGGGAATACTGGAGGACTAAGAAAAGGGAGCAGAGAGCAAGGCTGTCCAAGGCCAAGAAGAAGGTTAAAGCTCCAAACACAGGAATCTGTAAACCTGTGTGTACAGATGGACATGTGCCTCCTTGTGAATTTAGTCCTACTTTGCTCAATAGTGATGGTTCATACCAAACAAGTGTTGCACAAAATCAGACCAAGGGTATGGTGATTTGTAAAAAGCAGATGAAAAGCTTGACCACTGAAGAATCAAACATGGAAGCTTCCATGATCAAACTTAATGGGGCACCACTCACCAAGGGCTTACCAGTGCCTGCAGCATGCATAAAGGTACACCCAACCAGCACAACACCTCGACAGACACTGAACAGATCATCAGCCTTTAACGGCAACCTCTCAAGCATTTCTCAGATAAGTGCTGTATCCCAGCTAGCACCAAAGTGCAGCAAACAAGCCCCTCAAATTAAATGCTGTGTAACACCCAGGTCCTTGGCCTTTGTGGAATGTAAGTTTGATAAAGACCAGCGCATCCTAGCAAGAAGTGGTACCAATACAAATAGAAATGCTGGTGCCAACGTTCCGGTATGCAGCATGGTCGTGTGCAAAACCACAGAAGTGGCCATGACTGAAGAGGAGAAGGTTGCTAAGCGTAGGGAGAACTGGCGTATCAAAAAACGAGAGCAAAGGGCAAAACGTGCTGAGAAGCTGAAGATGGATCGAGAAAAGCTGCAAAGTTTTGAAAAAGGACAACAGGAAACAGAGAAGCTTTCCTGTGCTGCCCCAGCACATTCATTATCTCCTGTGAACACAATGGCTTTGAGAGGAGCCAAGCAATGTAACTCTGGGATGTCTGTTGACTCAAGACTGAGTGCTGGAAAACCATTACATTATGGAGTCAGAGTGGAAAGAGATAAATTATCAACCCAAAGACCCTATAAACCACAATCAGTGGTTTTAAAACTAGCCGAAAGGCAAAGGTTAATAACCAAAAACCTCTCCTCTGTTGCAGTTTATAGCACAAATCAATTTCAGGATTCAAAACAAAATCATATGGCCATATCTTCAGGGGTTTCTCTGCAGCCTTTAAGATCTACCCAAGCAAGTGGGCAATCCAAAATGCCGCAACAGAGGTTTGTCCGAATTCAAAGGCGGCGTGGTTTACCACAAGGGAATGAGACAGCCGAGGAGCGACTTGCCAAGCAAAGGGAGTATTGGCGTATCAAAAAGCGGGAGCAAAGAGCAAAGCGTTCTTTGGTATTGAAAGGCCGCTTGAAGGACCGGGATGCGTTTAATTGGCGTGCAAAGCGCTACCAGATCATAATGGAGCAAATGCGAAAGACACCAACAGGCCTCCAGAAAATACCACaaccaaataaaaacacactcctcaacacCTCTAATCCTATTAGTAGCTTTATCAAAGAGGATGGCACAGTAACTGTCACCATGTCGAAGACTACAGCTGAGAAAGGTCCACCTGCCATAAGCTGCAGTTTATCATCTGTGAAATTATCAGAGTCATCTGGTCCACCTATGTCACAAAATTTAATTAGGACCAGAGCCAGACCTGTTCTACATAGCATTCCAAATAACACAAATGTGTCAGCAAATCAGCGAAGAACTCGAAGGTCAACTGGTCAGAACATTACTGCTTTTGATCCTGTGGTTGGGTCAAAAGTAGCCAGTGGTACAGAAGATGCTACGATTCTTACAAGTTCAACAGAAGCCACCCAGACTGAAGACCTAATTGCAGAGAATAGGACAACTTTTAAGACGGAGTTGGAGAGCTGTGATTCCAGTTCAGCTGTTACCCCAGGTTTGGTCTCAACACCATGTGATACCACAAAACAAGAACCCATTTATCCCTCAATAGCTATGGTATGTTCCCTCAAAGAACAAAGTCAGACTATGAACATTAAAGACACAAAATCTGTACCTTCCTGTCCCCAGACCAGTGCTGAGGCGGAGCCTTGTTCGAATAGTGACAGCCAGTCCACCACTCTCTTAGTGGTGGCATCTATGAAAAAGCTCCTGGAAGAATCTCTTAGCTCGGTGGGTGACAGTAATAGCTGTTCTATAGATAAAGGTGAGCTTTTGCCTTGTAAAACTGAAGATAAACCTTTTCttcaggaggagaaagaaacagacagaaagcctGACCTTACAACACCTCAGGAATTCTCTGCAGACACTTACTCTTCTGTAGTGGTCAAACAGAGTCCATCTCCTTGTCATTCTCCCCTGCAGGCACAAGACTTTTCTTCTGACGGTACTGTCCTTTCATGCCGAGACTCCTCACTTCAACTTCCTTGTACTGCCACTTGCTTTAATAAAGTTCCAGGAGATGAAAGATGTGAATTGCCAGTGGCTGTATGTGTGACCCCCTTACAGAGGGGCAACTCAGTACATAGTGGCAAAACTTCCGCACCCCAGCGGAATTTTCCTCCTCAGGCTCGTGGAGGTCAGCAGCTGAATGAGAACAGTGAGctccagagaaagagagaatactGGCGAGTAATGAAAAGGCAACAGAGAGCAAGGAAGGccaaagagatggagagaggaaaagatgcTCTGCGTCCTCCTCAGAGGAAATGTGGCACCTCTCAAGTCATTCACCCGCCTGTGGCTCAGAAGATGAATCACACAAACCTTAACAATCCTGTTATTCTACCCAGTGTCACTTCACGTCCCACCCGGCCTGTGTTAAGTCCCACTGCATCATCTAACCAACAGCCATCAAATGAGGCAAGGCAGCTATTGTTTGAAGGACAGAAGGGTAAGACTAAATATTCAGAGGTGTCTCAGGTGAACAAATGGCAGCTACAGGTTCAGGGAAATGTTCCTACTTCAGCCACCAGACCAGGTACTGTGACCTCCATTCCGATGAATAATGTAAAGCTGTCAGATCCTCAAATACAGACTAGAGGGTCCTCAATGACCAAATTAAAAAGTAATCAAAGCCAATTAAAGATAACTGCAAATCAAGAACTAGATCCTGATGACGTTATACAAAGGAAGAGGATGCATTGGAGAATAAAGAAGCAGGAGCAGCGAGCTCGGAAGGCGGCACGGGAAAGAGAGCTCAGCCACCAGACAACACTCAACCAATCAAGACACAGCTGGTCAAACAACGTTACACATGTAGTTCAAAGCATACCACCAGAGAGACTGGACTACATGCCTGAAGAGTGTCAGACTACATCAGTGAAAGATGAAGCAGAAATATGTTATATTCCTGATGATGATTGTTCAGATGAGCCCTTGTCAGAGGACAAGTGGAGAAGCACCTACCTCATGGATTACGATCCTGTAAACCAGCTGCTGGTGTGCATGGTGTGTGGGGAACAGCAGTACACCTTTAGTGCAGAGGTAGTGAGAGCTCATATAGAGGAAACCCACCCTGGCACTCTGTCATTGGAAGAGGCTGAGCGTCAACGCATCCTAGAAGCCTGGGATGAGCAAGTGGCAGTGAGAGAGCGCTTCTTCACCAACCAGCTGTGGCAGAACAGCAGTGTCCTCAAAGAACAGAGCTCGAGGCACACAGCTGAGGTCGAAGTGATTCTGGGCCAAGATGACAAAGCAGATCAATCTAAATAAGTCTTGGTTTGCTGATAGAAAACAAGGTAGTGtgagaaatgacattttccaCAAGAATGTCAAAATCTGGAAATCTTAAATGTATTTGTTAAgcaaaacacaaaagcacagagGGACATTTGAGGCATACTCTGCCTGAGCATGTTAAAGCTCTTTTTATAGTAAACACCAAACACATGGTGTTTTCATCTGGATTGTACTGCATTGCTGTATTGCAAACTTTTTCTTAGAGAGGGGACAAAGTGATACATCCAATATAAATGCGTGCAAATGATAtcaattttatacatttatgtttacataCATTCATCTATGTGCATCCATGTATTCATCTGTGTTTAACATTCAACATTAACCTCCATAGCTGTTTGTGTTCTGGATCTTTCACAAACTGAGGAGTCGAATTTGAGATACTGTAGACCTCTTCAATGGCATGCTGTTTCTTTCACCCTGGTGCTTATCATTTCCTCAGAGCATTGCCTTCCTTTTTTAAGATGTTACTATTTAATACTACATacttacacacacccacacacctgtTACGTTACATAGTGATCTCACTGAACCATTCATGTTAATGATGTTTAAGTGTGCATTTGCTATACATACAgcaattatttctgttttaataaaaatctttttgttctgggaaaagaataaagaatttgGTATTCATTTTACTTTCTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108267583

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936377.2 True 4920 mRNA 0.44 7 20485644 20496755

Neighbor

gene id symbol gene type direction distance location
rtn3 rtn3,LOC108267754,LOC108440822,LOC103032175,LOC107679257,LOC107731898 coding upstream 5847 20458841 ~ 20479797 (+)
rgs12a LOC108268015 coding upstream 73988 20378775 ~ 20411656 (+)
msantd1 msantd1 coding upstream 107774 20374263 ~ 20377870 (+)
dtx4a dtx1,LOC108267695,LOC108440124,LOC103026639,LOC107558401,LOC107731926,LOC107597891 coding upstream 113268 20352720 ~ 20372376 (+)
trnaa-cgc NA coding upstream 133159 20352414 ~ 20352485 (+)
eml3 eml3,LOC107558446,LOC107731903,LOC107679271,LOC107660723,LOC107709062 coding downstream 8009 20504764 ~ 20544748 (+)
mta2 mta2,LOC107679264,LOC107660724,LOC107709145,LOC107731904,LOC107558444 coding downstream 52925 20549680 ~ 20565417 (+)
cth1 cth1,LOC108268299,LOC108440851,LOC103030689 coding downstream 71151 20567906 ~ 20570053 (+)
taf6l taf6l,LOC107660726,LOC107679290,LOC107731936 coding downstream 73616 20570371 ~ 20577481 (+)
LOC113539982 LOC108267206,LOC108440832 coding downstream 83019 20579774 ~ 20582012 (+)
G67958 LOC108267586 non-coding upstream 3889 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 209969 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 519756 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 568475 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 571241 19911739 ~ 19914403 (+)
G68054 NA non-coding downstream 138593 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 195508 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 368123 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 691776 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 708990 21205745 ~ 21209324 (+)
fcer1g LOC100305060 other upstream 330867 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 418424 19990684 ~ 20067220 (+)
G66864 NA other upstream 1626992 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2277080 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2342013 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 523503 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 817463 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1132321 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1255661 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2153055 22649810 ~ 22652447 (+)

Expression


Co-expression Network