ppargc1a (ppargc1a,LOC108437096)


Basic Information

Item Value
gene id ppargc1a
gene name ppargc1a,LOC108437096
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18532923 ~ 18564790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936423.2
CGGCGGTCGCGCGCCAGTCACTCCTCCCTGCCTACTTTTAATAGCTGCGTCATGTGACGGAGAGCAGTTGTAAGGCAGGTGCCCCTCGGTTCATTCTCAGTGAGGGGGCACTTCCCTGCACGACAGCACAATCTGGAACGCTTGGATTTTCACCTTtcctattgatttttttttattattattattattatctttttttttttttttaattattattatacctatatatttttttgtaccGTCATTCAGTGGCTGGATGGCGTGGGACAGGTGCAACCAGGAGTCGGTGTGGACGGAACTAGAGTGTGCTGCCTTGGTTGGGGAAGACCAGCCCCTCTGTCCTGACTTACCTGAACTGGACCTCTCTGAGCTGGACGTCAGTGATCTGGATGCAGATAGCTTTCTGGGTGGACTCAAGTGGTACAGCGACCAATCAGAAATCATTTCCAGCCAATATGGCAACGAGTCATCCAATCTGTTCGAGAAGATAGATGAAGAAAATGAGGCCAACTTGCTGGCAGTGCTCACAGAAACCCTGGACAGTATCCCCGTGGACGAGGACGGATTGCCTTCGTTTGAAGCCCTGGCAGATGGGGACGTGACCAACGCCAGTGATCAGAGCTGTCCCTCCACCCCCGATGGCTCGCCACGCACCCCAGAGCCAGAGGAGCCCTCCTTGCTAAAGAAACTCCTTTTGGCTCCACCCAACTCTCAGCTCAGCTATAATCAATACCCCGGCAGTAAGGCACAGAACCATGCAGCCAGCAACCACAGGATACGACCAACACCTGCTGTTACCAAGACAGACAACCCCTGGAACAGCAAACAAAGAGGGATCTGCCCCCAGCCAAACAGGCTGGTGAGACGCCCATGCACTGAACTGCTCAAGTACCTCACTGCCAGCGATGATGCCTTCCAGACAAGAGCCAGTGAAACCAAGAGCACCTGGTCAGGCTGCGACAAAGACAGGGGTGGGCCTGGTACTTCCTCCTGTTCGTCGTCTTCCTCTCCATCTTCTTCATCcacttcctccttctcctccttgtcctcctgttcctcctctACCGCCTCAAAGAAGAAGCCCACCTCTGCCTCCCTGtcaacacagcagcagcagcagcagcagcagcagctggcaGTGCAGGCCCAGAGAGCCAAACCAACCACCTTGCCACTTCCTTTGACCCCAGAGTCTCCAAATGACCACAAGGGATCTCCATTTGAGAACAAGACCATTGAACGCACATTGAGTGTGGAGATCTCTGGAACCCCAGGTCTGACACCACCTACCACACCTCCTCATAAAGCCAGTCAAGAGAACCTTTTCAAAGTATCACTCAAAACCAAGCTGTCTTCAGCTTCTTCAGCCCTGACGAGCAAGAAGGCCAAGCTGAGCAATGGAAGCCCTAGCTCTCTTCCATTCAGTAGCTCCAGCAGGAAGGGCCATGAGAAGTCTGAGCTGTATGCCCAGCTGAGCAAGGCATCCTCTGCCCTGCCTCTGGGAAACTTAGAAGAGTGCCGGGGCAAGCGGCCCACGCCCCGTGTGTTTGGTGATCATGATTATTGCCAGGCCTCAAGCACAAAACGAGACAATGGCACATCGGCTGCCACGATCACTGGGCCTGTAGAGGGCCGGCATGTACAAGCTAAAGACTCAACCATGCCAACCTTCTCTAATCTCACATCCTCTTTGTCTTCCACCAGTCCCTTATCTTCCTCTCTGGCAAGGCAGCTGCAGGGTCTTTGCCCCATGGTTCAGGAGGCTTGTCCAGACAAGGAAGCTCAGGGGCAGGACCATAGTCCTGCACTGGGTGCCAAAACTTCTAAAGAGTGCATCTCTGCTGGCAGGAAACTGCTGCGAGACCAGGAGATACGGGAAGAGCTCAATAAGCACTTTGGTAACCCCCAGCAAGCCTTTTTTAGTGAGACTGAGCAGAGTGGGTTCCAGCCACTAGATGAAAGTGACTCTGGGGATGAGAACTATTACCCTTTTGAGGCCTACATGGACACAGGCCTGCCTGACTTTGAGGACCTAGATGTGGGCCGTGAGCGTCTTCTTTGCTCTTGGGAAGGGACTCCACTGGAGATGCTCTTTGAAGGTTCACCGCCCTGTTCCCCATCCAGCAGCTTACCTTCCCAGAGCTCCGTCTCGCCACCCTCAAGTCTGCTCTCTCCACGGCACTTCTACAACTCGCAATCTGGGTCCCGCTCTAGGTCCCGCTCCAGGTCTTCCTCCCGCCACAGATACAGATCCCTCTCCAGATCTCCTTACTCCCGTTCCCAGTCCCCAGATAACTGCTCCCCCTCTTGGTCTCATCATACTGTTGATAAGAGCACTTTCAAATCCAGGACTATTAGAAGTCCTCAGTCTGACTCTCACTCTGGTCTCGGTCAGAGGCCCAGGTATGACAGCTATGAAGAATACCAGCATGAACAGCTGCAGAGGGAGGAGTACCAGCGGGACTATGAGAAACGCGAGGTAGAGAGGGCTGAACAGAGGGAGAAACAACGAAAGAGAGCAATAGAGGAGAGGCGGGTTTTGTACGTTGGCCGTCTCCGGGCTGACAGCACACGCTCCGAACTCAAGCGGCGCTTTGAAGTTTTCGGCGAGATCGAGGAGTGTGCCATCAACTTCAGACATAATGGGGACAATTTTGGCTTTATCACCTACCGCTACACTTGTGATGCCTTTGCTGCCCTTGAGAATGGACACACCTTGCGCAGGCCGAACGAGCCTCAGTTTGAGCTCTGCTTTGGTGGACAAAAGCAGTTCTGCAAATCCAATTACACAGACTTGGACTCTCATTCTGAAGACTTTGATCCAACTACAACTAAAAGCAAATATGACTCGATGGATTTTGACAGCTTGTTGCGCGAGGCCCAGTGTAGCCTGAGAAGGTAACAAGCTCCACCACACCTGCTGGCTGCAAAGCGAGGGATTTGTGATACCTCACTGCTGTTTCGCTCCTCTGAATATGAGACTACTACAAGTTTTACACTCAATATagagggatata
>XM_026936424.2
GGAGCGGCGGTCGCGCGCCAGTCACTCCTCCCTGCCTACTTTTAATAGCTGCGTCATGTGACGGAGAGCAGTTGTAAGGCAGGTGCCCCTCGGTTCATTCTCAGTGAGGGGGCACTTCCCTGCACGACAGCACAATCTGGAACGCTTGGATTTTCACCTTtcctattgatttttttttattattattattattatctttttttttttttttaattattattatacctatatatttttttgtaccGTCATTCAGTGGCTGGATGGCGTGGGACAGGTGCAACCAGGAGTCGGTGTGGACGGAACTAGAGTGTGCTGCCTTGGTTGGGGAAGACCAGCCCCTCTGTCCTGACTTACCTGAACTGGACCTCTCTGAGCTGGACGTCAGTGATCTGGATGCAGATAGCTTTCTGGGTGGACTCAAGTGGTACAGCGACCAATCAGAAATCATTTCCAGCCAATATGGCAACGAGTCATCCAATCTGTTCGAGATAGATGAAGAAAATGAGGCCAACTTGCTGGCAGTGCTCACAGAAACCCTGGACAGTATCCCCGTGGACGAGGACGGATTGCCTTCGTTTGAAGCCCTGGCAGATGGGGACGTGACCAACGCCAGTGATCAGAGCTGTCCCTCCACCCCCGATGGCTCGCCACGCACCCCAGAGCCAGAGGAGCCCTCCTTGCTAAAGAAACTCCTTTTGGCTCCACCCAACTCTCAGCTCAGCTATAATCAATACCCCGGCAGTAAGGCACAGAACCATGCAGCCAGCAACCACAGGATACGACCAACACCTGCTGTTACCAAGACAGACAACCCCTGGAACAGCAAACAAAGAGGGATCTGCCCCCAGCCAAACAGGCTGGTGAGACGCCCATGCACTGAACTGCTCAAGTACCTCACTGCCAGCGATGATGCCTTCCAGACAAGAGCCAGTGAAACCAAGAGCACCTGGTCAGGCTGCGACAAAGACAGGGGTGGGCCTGGTACTTCCTCCTGTTCGTCGTCTTCCTCTCCATCTTCTTCATCcacttcctccttctcctccttgtcctcctgttcctcctctACCGCCTCAAAGAAGAAGCCCACCTCTGCCTCCCTGtcaacacagcagcagcagcagcagcagcagcagctggcaGTGCAGGCCCAGAGAGCCAAACCAACCACCTTGCCACTTCCTTTGACCCCAGAGTCTCCAAATGACCACAAGGGATCTCCATTTGAGAACAAGACCATTGAACGCACATTGAGTGTGGAGATCTCTGGAACCCCAGGTCTGACACCACCTACCACACCTCCTCATAAAGCCAGTCAAGAGAACCTTTTCAAAGTATCACTCAAAACCAAGCTGTCTTCAGCTTCTTCAGCCCTGACGAGCAAGAAGGCCAAGCTGAGCAATGGAAGCCCTAGCTCTCTTCCATTCAGTAGCTCCAGCAGGAAGGGCCATGAGAAGTCTGAGCTGTATGCCCAGCTGAGCAAGGCATCCTCTGCCCTGCCTCTGGGAAACTTAGAAGAGTGCCGGGGCAAGCGGCCCACGCCCCGTGTGTTTGGTGATCATGATTATTGCCAGGCCTCAAGCACAAAACGAGACAATGGCACATCGGCTGCCACGATCACTGGGCCTGTAGAGGGCCGGCATGTACAAGCTAAAGACTCAACCATGCCAACCTTCTCTAATCTCACATCCTCTTTGTCTTCCACCAGTCCCTTATCTTCCTCTCTGGCAAGGCAGCTGCAGGGTCTTTGCCCCATGGTTCAGGAGGCTTGTCCAGACAAGGAAGCTCAGGGGCAGGACCATAGTCCTGCACTGGGTGCCAAAACTTCTAAAGAGTGCATCTCTGCTGGCAGGAAACTGCTGCGAGACCAGGAGATACGGGAAGAGCTCAATAAGCACTTTGGTAACCCCCAGCAAGCCTTTTTTAGTGAGACTGAGCAGAGTGGGTTCCAGCCACTAGATGAAAGTGACTCTGGGGATGAGAACTATTACCCTTTTGAGGCCTACATGGACACAGGCCTGCCTGACTTTGAGGACCTAGATGTGGGCCGTGAGCGTCTTCTTTGCTCTTGGGAAGGGACTCCACTGGAGATGCTCTTTGAAGGTTCACCGCCCTGTTCCCCATCCAGCAGCTTACCTTCCCAGAGCTCCGTCTCGCCACCCTCAAGTCTGCTCTCTCCACGGCACTTCTACAACTCGCAATCTGGGTCCCGCTCTAGGTCCCGCTCCAGGTCTTCCTCCCGCCACAGATACAGATCCCTCTCCAGATCTCCTTACTCCCGTTCCCAGTCCCCAGATAACTGCTCCCCCTCTTGGTCTCATCATACTGTTGATAAGAGCACTTTCAAATCCAGGACTATTAGAAGTCCTCAGTCTGACTCTCACTCTGGTCTCGGTCAGAGGCCCAGGTATGACAGCTATGAAGAATACCAGCATGAACAGCTGCAGAGGGAGGAGTACCAGCGGGACTATGAGAAACGCGAGGTAGAGAGGGCTGAACAGAGGGAGAAACAACGAAAGAGAGCAATAGAGGAGAGGCGGGTTTTGTACGTTGGCCGTCTCCGGGCTGACAGCACACGCTCCGAACTCAAGCGGCGCTTTGAAGTTTTCGGCGAGATCGAGGAGTGTGCCATCAACTTCAGACATAATGGGGACAATTTTGGCTTTATCACCTACCGCTACACTTGTGATGCCTTTGCTGCCCTTGAGAATGGACACACCTTGCGCAGGCCGAACGAGCCTCAGTTTGAGCTCTGCTTTGGTGGACAAAAGCAGTTCTGCAAATCCAATTACACAGACTTGGACTCTCATTCTGAAGACTTTGATCCAACTACAACTAAAAGCAAATATGACTCGATGGATTTTGACAGCTTGTTGCGCGAGGCCCAGTGTAGCCTGAGAAGGTAACAAGCTCCACCACACCTGCTGGCTGCAAAGCGAGGGATTTGTGATACCTCACTGCTGTTTCGCTCCTCTGAATATGAGACTACTACAAGTTTTACACTCAATATagagggatata
>XM_034304006.1
gtgtgtgtgcggctcTGTGGAGCGCTCAGGAGACAGGCTATCTGTCCGGGTCCGAGCTCACAGCCGCCTCCGGCTTGCTGCTATGTATCTGCGCCAGTGTGCTGCCTTGGTTGGGGAAGACCAGCCCCTCTGTCCTGACTTACCTGAACTGGACCTCTCTGAGCTGGACGTCAGTGATCTGGATGCAGATAGCTTTCTGGGTGGACTCAAGTGGTACAGCGACCAATCAGAAATCATTTCCAGCCAATATGGCAACGAGTCATCCAATCTGTTCGAGAAGATAGATGAAGAAAATGAGGCCAACTTGCTGGCAGTGCTCACAGAAACCCTGGACAGTATCCCCGTGGACGAGGACGGATTGCCTTCGTTTGAAGCCCTGGCAGATGGGGACGTGACCAACGCCAGTGATCAGAGCTGTCCCTCCACCCCCGATGGCTCGCCACGCACCCCAGAGCCAGAGGAGCCCTCCTTGCTAAAGAAACTCCTTTTGGCTCCACCCAACTCTCAGCTCAGCTATAATCAATACCCCGGCAGTAAGGCACAGAACCATGCAGCCAGCAACCACAGGATACGACCAACACCTGCTGTTACCAAGACAGACAACCCCTGGAACAGCAAACAAAGAGGGATCTGCCCCCAGCCAAACAGGCTGGTGAGACGCCCATGCACTGAACTGCTCAAGTACCTCACTGCCAGCGATGATGCCTTCCAGACAAGAGCCAGTGAAACCAAGAGCACCTGGTCAGGCTGCGACAAAGACAGGGGTGGGCCTGGTACTTCCTCCTGTTCGTCGTCTTCCTCTCCATCTTCTTCATCcacttcctccttctcctccttgtcctcctgttcctcctctACCGCCTCAAAGAAGAAGCCCACCTCTGCCTCCCTGtcaacacagcagcagcagcagcagcagcagcagctggcaGTGCAGGCCCAGAGAGCCAAACCAACCACCTTGCCACTTCCTTTGACCCCAGAGTCTCCAAATGACCACAAGGGATCTCCATTTGAGAACAAGACCATTGAACGCACATTGAGTGTGGAGATCTCTGGAACCCCAGGTCTGACACCACCTACCACACCTCCTCATAAAGCCAGTCAAGAGAACCTTTTCAAAGTATCACTCAAAACCAAGCTGTCTTCAGCTTCTTCAGCCCTGACGAGCAAGAAGGCCAAGCTGAGCAATGGAAGCCCTAGCTCTCTTCCATTCAGTAGCTCCAGCAGGAAGGGCCATGAGAAGTCTGAGCTGTATGCCCAGCTGAGCAAGGCATCCTCTGCCCTGCCTCTGGGAAACTTAGAAGAGTGCCGGGGCAAGCGGCCCACGCCCCGTGTGTTTGGTGATCATGATTATTGCCAGGCCTCAAGCACAAAACGAGACAATGGCACATCGGCTGCCACGATCACTGGGCCTGTAGAGGGCCGGCATGTACAAGCTAAAGACTCAACCATGCCAACCTTCTCTAATCTCACATCCTCTTTGTCTTCCACCAGTCCCTTATCTTCCTCTCTGGCAAGGCAGCTGCAGGGTCTTTGCCCCATGGTTCAGGAGGCTTGTCCAGACAAGGAAGCTCAGGGGCAGGACCATAGTCCTGCACTGGGTGCCAAAACTTCTAAAGAGTGCATCTCTGCTGGCAGGAAACTGCTGCGAGACCAGGAGATACGGGAAGAGCTCAATAAGCACTTTGGTAACCCCCAGCAAGCCTTTTTTAGTGAGACTGAGCAGAGTGGGTTCCAGCCACTAGATGAAAGTGACTCTGGGGATGAGAACTATTACCCTTTTGAGGCCTACATGGACACAGGCCTGCCTGACTTTGAGGACCTAGATGTGGGCCGTGAGCGTCTTCTTTGCTCTTGGGAAGGGACTCCACTGGAGATGCTCTTTGAAGGTTCACCGCCCTGTTCCCCATCCAGCAGCTTACCTTCCCAGAGCTCCGTCTCGCCACCCTCAAGTCTGCTCTCTCCACGGCACTTCTACAACTCGCAATCTGGGTCCCGCTCTAGGTCCCGCTCCAGGTCTTCCTCCCGCCACAGATACAGATCCCTCTCCAGATCTCCTTACTCCCGTTCCCAGTCCCCAGATAACTGCTCCCCCTCTTGGTCTCATCATACTGTTGATAAGAGCACTTTCAAATCCAGGACTATTAGAAGTCCTCAGTCTGACTCTCACTCTGGTCTCGGTCAGAGGCCCAGGTATGACAGCTATGAAGAATACCAGCATGAACAGCTGCAGAGGGAGGAGTACCAGCGGGACTATGAGAAACGCGAGGTAGAGAGGGCTGAACAGAGGGAGAAACAACGAAAGAGAGCAATAGAGGAGAGGCGGGTTTTGTACGTTGGCCGTCTCCGGGCTGACAGCACACGCTCCGAACTCAAGCGGCGCTTTGAAGTTTTCGGCGAGATCGAGGAGTGTGCCATCAACTTCAGACATAATGGGGACAATTTTGGCTTTATCACCTACCGCTACACTTGTGATGCCTTTGCTGCCCTTGAGAATGGACACACCTTGCGCAGGCCGAACGAGCCTCAGTTTGAGCTCTGCTTTGGTGGACAAAAGCAGTTCTGCAAATCCAATTACACAGACTTGGACTCTCATTCTGAAGACTTTGATCCAACTACAACTAAAAGCAAATATGACTCGATGGATTTTGACAGCTTGTTGCGCGAGGCCCAGTGTAGCCTGAGAAGGTAACAAGCTCCACCACACCTGCTGGCTGCAAAGCGAGGGATTTGTGATACCTCACTGCTGTTTCGCTCCTCTGAATATGAGACTACTACAAGTTTTACACTCAATATagagggatata

Function

symbol description
ppargc1a Predicted to enable nuclear receptor coactivator activity. Acts upstream of or within late distal convoluted tubule development; proximal straight tubule development; and skeletal muscle tissue development. Predicted to be located in PML body. Predicted to be active in nucleus. Is expressed in several structures, including mesoderm; musculature system; nervous system; pericardial region; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including macular degeneration; malignant fibrous histiocytoma; neurodegenerative disease (multiple); non-alcoholic fatty liver disease; and type 2 diabetes mellitus. Orthologous to human PPARGC1A (PPARG coactivator 1 alpha).

NR:

description
LOW QUALITY PROTEIN: peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like

GO: NA

KEGG:

id description
K07202 PPARGC1A, PGC1A; alpha peroxisome proliferator-activated receptor gamma coactivator 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936423.2 False 3017 mRNA 0.52 13 18532923 18564786
XM_026936424.2 True 3018 mRNA 0.52 13 18532923 18564790
XM_034304006.1 False 2810 mRNA 0.53 13 18532923 18564217

Neighbor

gene id symbol gene type direction distance location
adgra3 adgra3 coding downstream 110149 18387899 ~ 18422774 (-)
kcnip4 kcnip4,LOC100711851,LOC101482924,LOC102215477,LOC103143416,LOC107691846 coding downstream 151414 18243517 ~ 18381509 (-)
LOC113540092 LOC108267609 coding downstream 314011 18197287 ~ 18218912 (-)
myoz2a LOC108267175 coding downstream 337149 18187643 ~ 18195774 (-)
LOC113539796 LOC108268300 coding downstream 355153 18143307 ~ 18177770 (-)
dhx15 dhx15,LOC107699613,LOC107691839 coding upstream 255509 18820299 ~ 18845420 (-)
ccdc149a ccdc149,LOC108268063,LOC100691566,LOC107671163,LOC101478871,LOC102778358 coding upstream 301724 18866514 ~ 18882947 (-)
LOC113540167 LOC108268090 coding upstream 321784 18886574 ~ 18896248 (-)
lgi2a lgi2,lgi2a,LOC107675415,LOC107691834,LOC107728668,LOC107601159,LOC107559946 coding upstream 334493 18899283 ~ 18907371 (-)
sepsecs sepsecs,LOC107559948,LOC107601169,LOC107675416 coding upstream 345962 18910752 ~ 18925523 (-)
LOC113539972 NA non-coding downstream 18205 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 145933 18386561 ~ 18386990 (-)
G66387 NA non-coding downstream 512114 18015144 ~ 18020809 (-)
G66355 NA non-coding downstream 668040 17864010 ~ 17864883 (-)
G66349 NA non-coding downstream 720397 17799122 ~ 17812526 (-)
G67016 NA non-coding upstream 382528 18947318 ~ 18947539 (-)
G67454 NA non-coding upstream 763558 19328348 ~ 19340529 (-)
G67453 NA non-coding upstream 768284 19333074 ~ 19339158 (-)
G67527 NA non-coding upstream 1040702 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 1051658 19616448 ~ 19629949 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 693008 17792226 ~ 17839915 (-)
G66281 NA other downstream 898055 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1088735 17439477 ~ 17444188 (-)
G66053 NA other downstream 1130459 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1927206 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 485360 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 1315178 19879968 ~ 19881640 (-)
G67587 NA other upstream 1323389 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 1354690 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 1397792 19962582 ~ 19965851 (-)

Expression


Co-expression Network