rcor2 (rcor2,LOC107588183,LOC107668449,LOC107749809)


Basic Information

Item Value
gene id rcor2
gene name rcor2,LOC107588183,LOC107668449,LOC107749809
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16715205 ~ 16726855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936428.2
GGTGTGGTGTGGCTCCCCCCCCTCCACCCcggcacatacacacactcacacacacacacacacacacacacacggagaggATCTCCATGCAGTCGATACCGTTggacgggagagagagagagaaagagagagagagagagagactcgaGTGAATATTCATCGAGGATTTAACTAGTTGTTTGGTTTCTTAATATCCAGTGCGTGCTCTGTAGTGCGGTGTTAGACGACCAGTCCATCGCTGATGAAGTTTCAGTAGCAGAGAGATTAAGCTAGCCAGGTGTGAAACTGCTTTCCCGGTTGGCAACTAACACAAATGTTGAACGACAGCTACTAGCTACCAACTGAAGCTGGAGGACCTAAAGCGTGGTTTTACACAAAAGAACCCCGACTTGAGAGACGAACAGGGCCAAAAGTGAGGCGAGACAAAAGAAAGCCATGCCGTCAGTGATGGAGCGCTCAGGATCTGGAGTTCTGTCCCGCAGCAGGGCAAAAACAGCAACCAATGGCAACAGTCAACACACTGATGAGGAGAGCAGTGATGAAGAACATTCACATGACAGCATGATTCGTGTGGGTGCAGACTACCAGGCACAGATCCCAGAGTACAAGCCAGAGCTTGAGCCTGACTACAGTGAGAAAGACCAGAGAAGCATGCTTGTGTGGTCACCCAACAGCCAAGTGTCTGATACAATGTTGGATGAGTACATCTTAATGGCCAAAGAGAAGCATGGATATAATATGGAACAGTCTTTGGGCATGCTGCTCTGGCACAAGCATGATGTGGAGAAGTCCCTGGCTGACCTGGCCAACTTCACGCCCTTTCCCGATGAGTGGACTGTGGAGGACAAGGTGCTGTTTGAGCAGGCGTTCAGCTTCCATGGCAAGAGTTTCCACCGCATCCAGCAGATGCTGCCAGATAAGTTGATCTCCAGTCTGGTAAAGTACTACTACTCCTGGAAGAAGACTCGGACTCGCACCAGTGTCATGGACCGACAGGCCCGCAAACTTGttagcaagagagagaaagaggacagTAATGACGAGATGGAAGAAGGAGACCCAGGAAGTGACAGTGACTTTGAGATCGACACAAAGAAAGAGTCCAAGATGAGCTCTGGTGCTGGAGGAGGCAGTGAGAGGAGCTCTGGGAGGTCAGGCCCTACACGCAAAGAGAACCAGGGGGCTCAGTACCGTCACCATCCACTGAGGGCACGCCGCAGACCTCCAAAAGGCATGCATCTGGATCAGGAAGACATAACCGCCCTGTCGGCTTCCACTGAGTCAGGAACCATCTCCAACCGCCAACTCGACACTCAGCTAGTGTCTCTCAAGAGACAGGTTCAAAGTATCAAGCAAGCAAACAGTGTCCTCAAATGGAGTTTGGCAGATGGTGTTGATGCCATGAGACCAACTGAGCCCACTCTTAAGATTAACTCGCGCTGGACCACAGAGGAGCAGCTCCTGGCTGTACAGGCTATCAGACGATATGGTAAAGACTTTGCCGCCATAGCTGACGTGATTGGGAACAAGACTGCGGGTCAGGTGAGCTCATTCTTCGTCAGCTACCGCCGCCGCTTCAATCTGGAGGAAGTGCTGCGAGAATGGCAGGCAGAACAGGAAGTGCTGCGGGGGAACAGCGAGACTATGAAGGACCTGAACGGAACAGCAGGAGTGGAAGAGGATGAGACTAAGAGGGACAGCGTGTCCCCTGCAGACTCTGGCAGTCCAGCGCCTTCCTCTGAAGTAGCCAGTAATGCCAGCCAGTCTTCTCCCCCGCTTACCCAACCCCCACCCTTACTACGCCCGACTCCCCCTAGTGCACCCCCAAGCCTGTTGCGCCAGCCTCCTCCTCTTCAAACGCGCCCCCTCCAGACCCGAACTCCACACAACCACCCTCCACCCCCACTCATCCGCCCTGCAGTGGCCTCGTCCCACCACCAGAGCAGTTTGAGGAACTCCATCGGTTCCTCTGCGGCTTCCAGCGCGCAGCTGCCTCCCTCGCTGATGGGGCTCAAAGTGGAGTCACCACACTCGCACTGATTCACACAAGCTGCTGGGGTTGGCCTCTGGCACTGATCTCAAACCAGTTCCAGCTTTGTTCAAGATTAGGATGTTAATGGAAACTGGTTCCAGATCAGGGCAAAGTGCTCACACTGATAGGGAGGAGCAGGTACTGTCCAGGTGGCAAGGGGAttcaaaatacacacattactacagGCACACAGGCACACAGGATGAGTCAGTGATGGTTATAGATATAGTGTTAGGTGTTAGACAGGTGAAATGACTCAGCAGTAGGTTTGGCATCACTCAGAAAATCCCCATTAAACAACAACTCATACGGGCAAACATCTCCCATTGTCACTCATCTACTACAGAAAAAACCTCAGTGCAGACTTGCCAAATACAGACCACACACACCTAGCGGGCCTCAGCTTTAATAATATACCTCAGAGGAGGCCACAGAACCCAAAACCACACAGTTCAGCATGATCAATTACAGAAATGACCTTTGACAGAAAACATTGTTAGTACTTGAACCAAAATTTCTCTGTGGAGAAAAAAGCCTTTTAGATGCTATACACTGGATTGTAATGAAATGCCTTGACAACTGAATCACAGGTTTCCtcatctccatggcaacagcagAACATCTCCAACTATGTTACACAGAAGACACCACATGTTGTTTGTGAGTGTAAACAGGGAACAGGCGTTCTTTCGTTTCCATTAAAGAGCCATGTATTACTAGAACTGAGCTTAGtgaagcagtttttttttttaaatttctattaCTGAGTCCCTGAAATATTAGTAGATCGTAATTATGTAGAAGTAGTTAATATTAAAGCACTAAATGACCCAAAatacttgactttttttttcttgcacaaACACTGAAGGACACTGATTCTTCAGTCAACTTTCTTGCTCCTGGAGGCAAAATGTGTAAGATGTTGCAACACTAAAGTTAATAGTTTGTGCCAGTGGAGTTTTCCATTTCCACCAAAACTTTGTATATGAGAAATGTTTACAGGTGAACTTGGATatggttgtatttttttctttttctttttagaatAAAGTGAAATGACCAAAA
>XM_026936429.2
gggggaggGGAAGAAAGAGGAACTCATGAGGTGAAGAGGATGGAGGAAGTCTTAGCAAGCAAGGAGAAATCATGAGCACAAATGCATTCATAGAtcaggagaagaaaagagaggaacaATAAACAAGACAACTAAGCCATGCCGTCAGTGATGGAGCGCTCAGGATCTGGAGTTCTGTCCCGCAGCAGGGCAAAAACAGCAACCAATGGCAACAGTCAACACACTGATGAGGAGAGCAGTGATGAAGAACATTCACATGACAGCATGATTCGTGTGGGTGCAGACTACCAGGCACAGATCCCAGAGTACAAGCCAGAGCTTGAGCCTGACTACAGTGAGAAAGACCAGAGAAGCATGCTTGTGTGGTCACCCAACAGCCAAGTGTCTGATACAATGTTGGATGAGTACATCTTAATGGCCAAAGAGAAGCATGGATATAATATGGAACAGTCTTTGGGCATGCTGCTCTGGCACAAGCATGATGTGGAGAAGTCCCTGGCTGACCTGGCCAACTTCACGCCCTTTCCCGATGAGTGGACTGTGGAGGACAAGGTGCTGTTTGAGCAGGCGTTCAGCTTCCATGGCAAGAGTTTCCACCGCATCCAGCAGATGCTGCCAGATAAGTTGATCTCCAGTCTGGTAAAGTACTACTACTCCTGGAAGAAGACTCGGACTCGCACCAGTGTCATGGACCGACAGGCCCGCAAACTTGttagcaagagagagaaagaggacagTAATGACGAGATGGAAGAAGGAGACCCAGGAAGTGACAGTGACTTTGAGATCGACACAAAGAAAGAGTCCAAGATGAGCTCTGGTGCTGGAGGAGGCAGTGAGAGGAGCTCTGGGAGGTCAGGCCCTACACGCAAAGAGAACCAGGGGGCTCAGTACCGTCACCATCCACTGAGGGCACGCCGCAGACCTCCAAAAGGCATGCATCTGGATCAGGAAGACATAACCGCCCTGTCGGCTTCCACTGAGTCAGGAACCATCTCCAACCGCCAACTCGACACTCAGCTAGTGTCTCTCAAGAGACAGGTTCAAAGTATCAAGCAAGCAAACAGTGTCCTCAAATGGAGTTTGGCAGATGGTGTTGATGCCATGAGACCAACTGAGCCCACTCTTAAGATTAACTCGCGCTGGACCACAGAGGAGCAGCTCCTGGCTGTACAGGCTATCAGACGATATGGTAAAGACTTTGCCGCCATAGCTGACGTGATTGGGAACAAGACTGCGGGTCAGGTGAGCTCATTCTTCGTCAGCTACCGCCGCCGCTTCAATCTGGAGGAAGTGCTGCGAGAATGGCAGGCAGAACAGGAAGTGCTGCGGGGGAACAGCGAGACTATGAAGGACCTGAACGGAACAGCAGGAGTGGAAGAGGATGAGACTAAGAGGGACAGCGTGTCCCCTGCAGACTCTGGCAGTCCAGCGCCTTCCTCTGAAGTAGCCAGTAATGCCAGCCAGTCTTCTCCCCCGCTTACCCAACCCCCACCCTTACTACGCCCGACTCCCCCTAGTGCACCCCCAAGCCTGTTGCGCCAGCCTCCTCCTCTTCAAACGCGCCCCCTCCAGACCCGAACTCCACACAACCACCCTCCACCCCCACTCATCCGCCCTGCAGTGGCCTCGTCCCACCACCAGAGCAGTTTGAGGAACTCCATCGGTTCCTCTGCGGCTTCCAGCGCGCAGCTGCCTCCCTCGCTGATGGGGCTCAAAGTGGAGTCACCACACTCGCACTGATTCACACAAGCTGCTGGGGTTGGCCTCTGGCACTGATCTCAAACCAGTTCCAGCTTTGTTCAAGATTAGGATGTTAATGGAAACTGGTTCCAGATCAGGGCAAAGTGCTCACACTGATAGGGAGGAGCAGGTACTGTCCAGGTGGCAAGGGGAttcaaaatacacacattactacagGCACACAGGCACACAGGATGAGTCAGTGATGGTTATAGATATAGTGTTAGGTGTTAGACAGGTGAAATGACTCAGCAGTAGGTTTGGCATCACTCAGAAAATCCCCATTAAACAACAACTCATACGGGCAAACATCTCCCATTGTCACTCATCTACTACAGAAAAAACCTCAGTGCAGACTTGCCAAATACAGACCACACACACCTAGCGGGCCTCAGCTTTAATAATATACCTCAGAGGAGGCCACAGAACCCAAAACCACACAGTTCAGCATGATCAATTACAGAAATGACCTTTGACAGAAAACATTGTTAGTACTTGAACCAAAATTTCTCTGTGGAGAAAAAAGCCTTTTAGATGCTATACACTGGATTGTAATGAAATGCCTTGACAACTGAATCACAGGTTTCCtcatctccatggcaacagcagAACATCTCCAACTATGTTACACAGAAGACACCACATGTTGTTTGTGAGTGTAAACAGGGAACAGGCGTTCTTTCGTTTCCATTAAAGAGCCATGTATTACTAGAACTGAGCTTAGtgaagcagtttttttttttaaatttctattaCTGAGTCCCTGAAATATTAGTAGATCGTAATTATGTAGAAGTAGTTAATATTAAAGCACTAAATGACCCAAAatacttgactttttttttcttgcacaaACACTGAAGGACACTGATTCTTCAGTCAACTTTCTTGCTCCTGGAGGCAAAATGTGTAAGATGTTGCAACACTAAAGTTAATAGTTTGTGCCAGTGGAGTTTTCCATTTCCACCAAAACTTTGTATATGAGAAATGTTTACAGGTGAACTTGGATatggttgtatttttttctttttctttttagaatAAAGTGAAATGACCAAAA
>XM_034303756.1
CCGCGCGTACAGTGGGAAGTAGTCCGGCCTGATGTAGCATACAGTGGGAGCAGCGCAGGTGAAGTGGGTTCAAGTCTATTGTCCATGCCGTCAGTGATGGAGCGCTCAGGATCTGGAGTTCTGTCCCGCAGCAGGGCAAAAACAGCAACCAATGGCAACAGTCAACACACTGATGAGGAGAGCAGTGATGAAGAACATTCACATGACAGCATGATTCGTGTGGGTGCAGACTACCAGGCACAGATCCCAGAGTACAAGCCAGAGCTTGAGCCTGACTACAGTGAGAAAGACCAGAGAAGCATGCTTGTGTGGTCACCCAACAGCCAAGTGTCTGATACAATGTTGGATGAGTACATCTTAATGGCCAAAGAGAAGCATGGATATAATATGGAACAGTCTTTGGGCATGCTGCTCTGGCACAAGCATGATGTGGAGAAGTCCCTGGCTGACCTGGCCAACTTCACGCCCTTTCCCGATGAGTGGACTGTGGAGGACAAGGTGCTGTTTGAGCAGGCGTTCAGCTTCCATGGCAAGAGTTTCCACCGCATCCAGCAGATGCTGCCAGATAAGTTGATCTCCAGTCTGGTAAAGTACTACTACTCCTGGAAGAAGACTCGGACTCGCACCAGTGTCATGGACCGACAGGCCCGCAAACTTGttagcaagagagagaaagaggacagTAATGACGAGATGGAAGAAGGAGACCCAGGAAGTGACAGTGACTTTGAGATCGACACAAAGAAAGAGTCCAAGATGAGCTCTGGTGCTGGAGGAGGCAGTGAGAGGAGCTCTGGGAGGTCAGGCCCTACACGCAAAGAGAACCAGGGGGCTCAGTACCGTCACCATCCACTGAGGGCACGCCGCAGACCTCCAAAAGGCATGCATCTGGATCAGGAAGACATAACCGCCCTGTCGGCTTCCACTGAGTCAGGAACCATCTCCAACCGCCAACTCGACACTCAGCTAGTGTCTCTCAAGAGACAGGTTCAAAGTATCAAGCAAGCAAACAGTGTCCTCAAATGGAGTTTGGCAGATGGTGTTGATGCCATGAGACCAACTGAGCCCACTCTTAAGATTAACTCGCGCTGGACCACAGAGGAGCAGCTCCTGGCTGTACAGGCTATCAGACGATATGGTAAAGACTTTGCCGCCATAGCTGACGTGATTGGGAACAAGACTGCGGGTCAGGTGAGCTCATTCTTCGTCAGCTACCGCCGCCGCTTCAATCTGGAGGAAGTGCTGCGAGAATGGCAGGCAGAACAGGAAGTGCTGCGGGGGAACAGCGAGACTATGAAGGACCTGAACGGAACAGCAGGAGTGGAAGAGGATGAGACTAAGAGGGACAGCGTGTCCCCTGCAGACTCTGGCAGTCCAGCGCCTTCCTCTGAAGTAGCCAGTAATGCCAGCCAGTCTTCTCCCCCGCTTACCCAACCCCCACCCTTACTACGCCCGACTCCCCCTAGTGCACCCCCAAGCCTGTTGCGCCAGCCTCCTCCTCTTCAAACGCGCCCCCTCCAGACCCGAACTCCACACAACCACCCTCCACCCCCACTCATCCGCCCTGCAGTGGCCTCGTCCCACCACCAGAGCAGTTTGAGGAACTCCATCGGTTCCTCTGCGGCTTCCAGCGCGCAGCTGCCTCCCTCGCTGATGGGGCTCAAAGTGGAGTCACCACACTCGCACTGATTCACACAAGCTGCTGGGGTTGGCCTCTGGCACTGATCTCAAACCAGTTCCAGCTTTGTTCAAGATTAGGATGTTAATGGAAACTGGTTCCAGATCAGGGCAAAGTGCTCACACTGATAGGGAGGAGCAGGTACTGTCCAGGTGGCAAGGGGAttcaaaatacacacattactacagGCACACAGGCACACAGGATGAGTCAGTGATGGTTATAGATATAGTGTTAGGTGTTAGACAGGTGAAATGACTCAGCAGTAGGTTTGGCATCACTCAGAAAATCCCCATTAAACAACAACTCATACGGGCAAACATCTCCCATTGTCACTCATCTACTACAGAAAAAACCTCAGTGCAGACTTGCCAAATACAGACCACACACACCTAGCGGGCCTCAGCTTTAATAATATACCTCAGAGGAGGCCACAGAACCCAAAACCACACAGTTCAGCATGATCAATTACAGAAATGACCTTTGACAGAAAACATTGTTAGTACTTGAACCAAAATTTCTCTGTGGAGAAAAAAGCCTTTTAGATGCTATACACTGGATTGTAATGAAATGCCTTGACAACTGAATCACAGGTTTCCtcatctccatggcaacagcagAACATCTCCAACTATGTTACACAGAAGACACCACATGTTGTTTGTGAGTGTAAACAGGGAACAGGCGTTCTTTCGTTTCCATTAAAGAGCCATGTATTACTAGAACTGAGCTTAGtgaagcagtttttttttttaaatttctattaCTGAGTCCCTGAAATATTAGTAGATCGTAATTATGTAGAAGTAGTTAATATTAAAGCACTAAATGACCCAAAatacttgactttttttttcttgcacaaACACTGAAGGACACTGATTCTTCAGTCAACTTTCTTGCTCCTGGAGGCAAAATGTGTAAGATGTTGCAACACTAAAGTTAATAGTTTGTGCCAGTGGAGTTTTCCATTTCCACCAAAACTTTGTATATGAGAAATGTTTACAGGTGAACTTGGATatggttgtatttttttctttttctttttagaatAAAGTGAAATGACCAAAA

Function

symbol description
rcor2 Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Is expressed in brain; pectoral fin; and ventral mesoderm. Orthologous to human RCOR2 (REST corepressor 2).

NR:

description
PREDICTED: REST corepressor 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936428.2 True 3100 mRNA 0.49 13 16715205 16725714
XM_026936429.2 False 2803 mRNA 0.48 13 16715205 16726855
XM_034303756.1 False 2749 mRNA 0.49 13 16715205 16726119

Neighbor

gene id symbol gene type direction distance location
adad2 LOC108267669 coding downstream 45788 16663129 ~ 16669417 (-)
fam113 LOC108268071,LOC108434623,LOC107741458 coding downstream 54018 16655940 ~ 16661187 (-)
otub1b otub1,LOC106608596 coding downstream 61418 16649185 ~ 16653787 (-)
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding downstream 130672 16566064 ~ 16584533 (-)
LOC113539955 LOC108267556 coding downstream 151068 16552388 ~ 16564137 (-)
arl2 arl2,LOC107588185,LOC107668402 coding upstream 36011 16762866 ~ 16768038 (-)
gpha2 gpha2 coding upstream 79005 16805860 ~ 16808136 (-)
LOC113539980 majin coding upstream 83829 16810684 ~ 16815789 (-)
badb NA coding upstream 92549 16819404 ~ 16823151 (-)
dysf dysf coding upstream 375674 17102529 ~ 17179641 (-)
G65715 NA non-coding downstream 30614 16675260 ~ 16684591 (-)
G65700 NA non-coding downstream 108613 16606007 ~ 16606592 (-)
G65508 NA non-coding downstream 263313 16451677 ~ 16451892 (-)
G65494 NA non-coding downstream 283687 16431136 ~ 16431518 (-)
G65493 NA non-coding downstream 285847 16429143 ~ 16429358 (-)
LOC117597072 NA non-coding upstream 1836 16728691 ~ 16735897 (-)
G65718 NA non-coding upstream 9298 16736153 ~ 16737913 (-)
G65722 NA non-coding upstream 76340 16803195 ~ 16804254 (-)
G65809 NA non-coding upstream 210358 16937213 ~ 16937420 (-)
LOC117597208 NA non-coding upstream 353309 17080164 ~ 17095201 (-)
bmp15 LOC108267203 other downstream 109488 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 120700 16592562 ~ 16594505 (-)
tnfsf12 tnfsf12 other downstream 288581 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 643513 16054528 ~ 16071692 (-)
smim20 NA other downstream 723220 15973579 ~ 15991985 (-)
G66053 NA other upstream 673739 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 712622 17439477 ~ 17444188 (-)
G66281 NA other upstream 866893 17593748 ~ 17634868 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 1065371 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 2323295 19050150 ~ 19155221 (-)

Expression


Co-expression Network