krcp (LOC108267668,LOC108434626)


Basic Information

Item Value
gene id krcp
gene name LOC108267668,LOC108434626
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16669457 ~ 16674227 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936430.2
TCAGATTTAACTCAGAGTTGGCGGGAGATGTGCTGCTGCTGCGGCTGATATTTCTCCAATACGGGTCGGATAAAATTATTAGTTGCCTCAGTTTTAATTTTCAAGCTATATCTTACTAATCAGTACATTGACGGAAAACGGAAAACATGGAGGAATTTGCTGTTTACGCGGTGTTTGGACCCGACGAACCGCCGCAGCAGATTGCAAATCTTCGTGGACATAGGGGCAGATCTGCAGTAAAGCCAGGTGTCCAGCAGATTGTACTCTTTACTAGAGGAAGATGGGAAAAGTGCAGTAGTGTTTCAGTCGAGCTCAATGATGAGAGGGACATGCTTATCACTCTGGGCAAATTAACACCATTCAACAAATGTGTTTCTTGGGAGTTAGGGGAAGATGGTGTGTGGAGTGATggagcaacattaaatgttcatATTGAGGGGgttaaAAGTGAGTCGCTTGATCCAGCACTGACCATTGCACAAAAGGAATACACTCCAGAGtgcaACACCACGACAGTGGTACCACGAGCAGGGTTGGGCAAGAGGAAGCGGTCGcgaggagaggaagaagagggaGAGGACACAAGAGGACAAGAGAATATTTGCCCAAACTCTTCAGAAAAGGTAACACCCCAGCGACGAGGAAAGAGCAATCCCCGCACTGGACAAACACGGCTGTTCCAGCAAAAAGAAGAGCAGAGCACCACCCGTACCCCTCCAAACCCTAAAGCTAAAGGAAAACAACAAACCAAACCCCCCACACAGACTGCTTTAATAGACGGTCCATCAGGCCGGTGGGGTCAGACTCTCTGTCCAATTGACCCTCAGACAGCCATACTTATTGGAGGACAAGGTGCCAGAATGCAGTTCTGCAAGGATCCCATTTGGAAGCTGTGTACAGAGGACTTGTCATGGGTCCCTGCTGAAACTCTGGCAGAGGGCCCCACACCAGAGGCTCGGATTGGCCACACAGCGACTTACGACCCCGAATCGAAGCGGATCTTTGTGTTCGGCGGCTCCAAACATAAGAAATGGTTCAATGACGTCCATATTTTAGACACACAGAGCTGGCGCTGGACTATGGTGGAGGCACAAGGTAAAGTTCCTCCTCTGGCTTATCATAGCTGCACTCTGTTCAGAGGAGAGCTTTTTGTGTTTGGAGGTGTGTTCCCTCGTCCCCATCCTGAACCTGATGGCTGCAGTGACTCCCTCTACATTTTCAATCCTGAAATGGCCATCTGGTATCAGCCCATTGTTAATGGAGACAAGCCAGCTCCACGCTctggGCATTCAGCTTGTGTGGTGCAGGGGAAGATCTTTATTTTTGGAGGCTGGGACACACCAGTCTGTTTCGATGACATGTTCATGCTTGATCTGTgcctTATGGAGTTTTCAGCTGTGCAGACAAGTGGATCAGTACCCTCACCAAGGAGCTGGCATGGCTGCGCTGTTCTGTCTGAGTCACGTTTCTTGGTCCATGGAGGCTACAATGGAAACGATGCTTTGAGTGACACGTTTTTATTCAACACAGACACAAATTGCTGGACATCTTTGGCATGTAGTCAGCTGACCTCAACACCAAGAGCTGGACACTCCatcatcaccatggcaacagccTGTGTGAAGgGTTCCTCTGATCAAGAGCAGGTTTCTGAGTCTCAAACATTGCTCATATTTGGAGGAGGGGACAATGAAGGCAGCTTCTTCTCTGACTTGATCACTGTGCCAGTGAAGGAGCTGTGTGAATGAGAATCAGTGCTTCGGTGAAGGGACTATGAGATTGTCTTCCTTGTGTTTCAAAGATTTTATGTTATGCTTTTGTTTCAGAAGTTTCATGGTGTCTTAAATGGAAATTAAGACTAGGACCTATGTTGGCTTggcatttaataataattaaaaaaaggcttCAACTCTTATTTGTGAACACAAGTGAAAGacattgaaaatgttttaaaggtgTATATTATCATTAAAATGTCTGTACTATACATAGATACAGTTGTTGTGGCATGTATCCTGTTCcaaatatattcattcatcataA

Function

NR:

description
rab9 effector protein with kelch motifs-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936430.2 True 2043 mRNA 0.46 13 16669457 16674227

Neighbor

gene id symbol gene type direction distance location
cskmt mettl12 coding upstream 13573 16653821 ~ 16655884 (+)
shroom4 shroom4,LOC107588210,LOC104951873 coding upstream 21328 16605696 ~ 16648129 (+)
zpax4 LOC108268120 coding upstream 178974 16470260 ~ 16490483 (+)
si:dkey-19b23.8 LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161 coding upstream 204229 16460591 ~ 16465228 (+)
chd3 chd3,LOC107738011 coding upstream 250527 16371997 ~ 16418930 (+)
mark2b mark2 coding downstream 1208 16675435 ~ 16715097 (+)
naa40 naa40,LOC107749810,LOC107691908,LOC107750594,LOC107668433 coding downstream 61840 16736067 ~ 16745357 (+)
b3gat3 b3gat3,LOC107750592,LOC107691906 coding downstream 72471 16746698 ~ 16750124 (+)
sb:cb1058 LOC108267120 coding downstream 77910 16752137 ~ 16755407 (+)
batf2 batf2 coding downstream 98172 16772399 ~ 16776829 (+)
G65601 NA non-coding upstream 75000 16592447 ~ 16594457 (+)
G65580 NA non-coding upstream 91720 16569687 ~ 16577737 (+)
G65542 NA non-coding upstream 154616 16514637 ~ 16514841 (+)
G65495 NA non-coding upstream 226557 16431945 ~ 16442900 (+)
G65395 NA non-coding upstream 238771 16430461 ~ 16430686 (+)
G65643 NA non-coding downstream 2302 16676529 ~ 16677366 (+)
G65644 NA non-coding downstream 49668 16723895 ~ 16729352 (+)
G65654 NA non-coding downstream 77633 16751860 ~ 16752090 (+)
LOC113539905 NA non-coding downstream 84000 16758227 ~ 16763461 (+)
LOC113540740 NA non-coding downstream 86292 16760519 ~ 16760583 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 298500 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 350291 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 629473 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2010521 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2400117 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 661270 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 935265 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1325931 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1439206 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1523085 18197312 ~ 18208564 (+)

Expression


Co-expression Network