exoc6b (exoc6b)


Basic Information

Item Value
gene id exoc6b
gene name exoc6b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16825208 ~ 16920946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936432.2
GTCAGCGCGCGGCGTTACGACTGGAGCTGAAGATGGCGAGCGCAGAGACCGCGGCGGAACATGAGCGGATCCTCCGGGAGATTGAAAGCACCGACACAAACTGTATCGGTCCCACACTCCGATCTGTGTACGATGGGCAAGAACATGGGCTCTTCATGGAGAAGCTGGAGGGGCGGATTCGCAACCACGACCGCGAGATCGAGAAGATGTGCAACCATCACTTCCAGGGCTTTGTGGACTCCATCACAGAGCTGCTTAAAGTTCGCGGAGAGGCGCAGAAACTCAAGGGTCAGGTGACTGAAACCAATCAGAAGCTGCAGAACAATGGCAAGGAGCTACTGGCGACGATGGACGAGTTGAGACGATGCCGTTTGCAACAGAGGAACATTGCCACCACCATCGACAAACTCACTCACTGCCTTCCAGtgctaGAAATGTACAGCAGACTGCAAGAACAGATGAAAGCCAAAAGatacTACCCCGCGTTGTGCACGTTGGAGCAGTTGGAGCAGAACTGCCTGCCGAAGGCGGGACAGTATCGTTTCTGCGCCATCATGGCTGAGAACATCCCAGTCTTGCGCACACACATCAGAGACGTCTCCATGTCTGACCTCAAAGACTTTCTGGAGAGCATACGTAAACACTCGGACAAAATTGGAGAGACTGCCATTAAACAGGCACAGGTGAGAAGCTCTCGCAACAGTGAGGTCACACGGCAGCAGCGGGCAGGCAGTGGGTGGAGATTGCGGAAGGAGGCGGGGTCAGGTACAGAGGTGGACAGGTCAGGTGGCAGCCCTCTCTCAGAAGAGGATTCTGGGATACTAGATGTAGAGGATGAGGATGACGATGAGGTTCCTGGTGCTCAGGACTTGGTGGACTTCTCACCTGTCTATCGCTGCTTGCATATCTACACAGTTCTAGGTGCCTGGGATACATTTGAGAACTACTACAGGAAACAGAGGAGGAAACAAGCTCGACTAGTGTTGCAGCCACATTCTAACATGCACGAAACCCTAGAGGGATACAGGCGGTACTTCAATCAAATTGTAGGtttttttgtaGTGGAGGACCACATCCTGCATACAACACAAGGCCTAGTGAACAGAGCTTATGTGGAGGAGTTATGGGAACTAGCTCTGTCAAAGACCATTGCAGCGCTCCGTACTCACTCATCATACTGCACTGACCCTGACCTGATTCTGGACCTGAAAAGCCTTATAGTCCTGTTTGCAGACACGCTACAGGGTTATGGGTTTCCAGTAAACCAGCTGTTTGACATGGTGCTTGAAATGAGAGATCAATATGGAGAGATTTTGCTGAAGAAGTGGAATCAGTCCTTTAGgCAAATCCTTGATCAAGACAATTATAGTCCTATCCCTGCAGCAACAGAAGAAGAGTACCAGCAAATCATAAGCCAATTCCCCTTCCAAGACTCAGAGCTAGACATGATGCCTTTCCCAAAGAAGTTTCCATTTTCTGAATTTGTACCCAAAGTCTACTCGCAACTCAAAGAGTTTATATATGCTTGCCTCAAATACTCGGAGGACCTGCACCTTAGTTCTACAGAAATTGATGACATGATACGCAAGTCTACTAACCTGCTGCTCACAAGAACTCTCAGTAACTGCCTGCAATATGCCATCAAGAAGAAGAATGTGGGATTAGCAGAGCTGGTTCAAATCATCGTAAACACGACACACCTTGAGTTGTCCTGTCACTACTTGGAAGAGTTCATCTCCAACATCACCAACGTGCCTCCAGACACAGTGAACACCACCAAACTGTACGGCACCTCCACCTTTAAGGATGCAAGGCATGCAGCAGAAGAGGAGATCTACACTAACCTGAATCTAAAGATTGATCAGTTCCTGCAGCTGGCAGATTATGATTGGATGGCAGCTCAAGGTGGGGGTCAGGCGAGTGACTACCTGAGTGACCTCATTGCCTTCCTCTGCAGCACCTTTGCTGTGTTCACACATCTGCCTGGAAAGGTTGCTCAGACAGCATGTATGTCTGCGTGTAAACATCTGTCCACCTCCTTGCTGCAGCTGCTACTTGAAGCTGATGTCAGGCAGGTATCTATGGGAGCACTCCAGCAGTTCAACGTGGACATcaaagagtgtgagaGGTTTGCCAGGGCCGGCCCGGTGCCTGGCTTCCAGGGGGACACTCTGCTGCTCGCCTTCATCGACTTGAGACAACTGTTGGACCTCTTTACTCAGTGGGATTGGTCTACATACCTTGCTGACTATGGACGTCCGACCTGCAAGTACCTGAGGGTCAGCCCGCATACCGCTCTGGCCCTCCTGGAGAAGATGAAGGACACTAGTCGGAAAAACAACATGTTCGCTCAGTTCCGTAAGAATGAGCGTGACAAGCAGAAGCTCATTGACACTGTCGTCAAGCAGCTGCGGAACCTTATTGCCAGCCACCAGTCCTGAGTCCACTGATGGTTGTATATCAGCTGACTTCCCCCGTGAACTTCTTGAATGGTCACTACCAGTAACAGCACCTACACCTTTGTAaaagagcaaaaacaatagacttgcaaaaaaaaaggaataggCAAGATTTGACAAATGGGTGCCATGGGTCTTTCAAATAATTATTTGTCTTACCCAAAGGGTACCATCTATGCCAGTTTTGCAGTCCTCGTTCTTAGCCTTTTAATGTCTTCCCAACAGCATCTCACTGGCGTCAGTATCAGTGAACCTTGAAAGTGCTCTCCCGTCTTCCTACATGACCATGTAAGCACAGCATAGGGTTACCAGTTGTGCAGCCCTTTTTAAGCCTGTCTCTATGAGACTTTGGTTATTAGCTTCACATATCTAGCAACTGCACATTTGACAATAGGGACTTTAAGCATTAATAGCTGCAGGGACGCTACAGTGCCCAGAAAAAAAGCCTGTGCATTTTTGAGTCTGGCTGCGTCATGCCACGGTAACCTTTGTGTTAACTACAGCAAAACCCACAGTTTACCAGTGTTTATATGAAATTTAGGTTATTTAGGAGTTAATTTAACCTTTTTACCATGAGTTCAATTGAACTATTGCTTGCACAGAATAAGGACACTATCATTTtgtatttcagatttatttcttgCCGCTGTAGCAGTTTCTTCACTACTCAATGCTGAAAGTCCCTAGTCTATTTTAAACCATCCTCAATAGAGAGAAGTAGAGTGATGTATTGAAACATCCTGTATATTGTAGTCTTAAGCCACTGCATAGTTCTCATTTCTGATAACACTGATGATTCTGTAATTCCCTTTAAATAGACAGTAAGGCAAAAACAAGTCGCAAATGAGTTCTGTTATAGCCTTAACTTACCGCAGGATCTCTATCAGCTACTGTTATTCTGTAGAGGCTAGTTATCAAATCTAGATAGAGCTCCAGCAAGGAATAGCTCACAGCATTGTTGcctgtataatgtgtgtgtttgtgtgagtgcaCCTACTTTTGTGCTTAGGGTCATTGTGGGTCTTTATTTAATTGATGGAATTTTCTCATCAAGTGGGTgcaatattactattattttcaAAGAGGGAAGAAATCATAAAATCTTAGGAACGTAggtaaatttttttattgtcaacACAAGAGGTCATGGTTTTGGTATTAATGGCTGTATATCACTTtatgtgcattgtgtgtgtgagcattgTCACTACcccattgtttgtttgtgtgcgtgCATAAACCCTGGCCCATTGTGAagggatagaaaataatcaaaacctAAAGGGAATAATTCTTCCCAAACTGTTCAGtttagggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgaatagcATTTTGTGGTTGTGCTCTTTGtgttggcctttttt

Function

symbol description
exoc6b Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to act upstream of or within vesicle docking involved in exocytosis. Predicted to be integral component of membrane. Predicted to be part of exocyst. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia with joint laxity type 3. Orthologous to human EXOC6B (exocyst complex component 6B).

NR:

description
PREDICTED: exocyst complex component 6B-like

GO: NA

KEGG:

id description
K19985 EXOC6, SEC15; exocyst complex component 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936432.2 True 3861 mRNA 0.46 22 16825208 16920946

Neighbor

gene id symbol gene type direction distance location
zgc:101765 LOC108267536,LOC108434636 coding upstream 6674 16811400 ~ 16818534 (+)
ppp2r5b ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189 coding upstream 21192 16776894 ~ 16804016 (+)
batf2 batf2 coding upstream 48379 16772399 ~ 16776829 (+)
sb:cb1058 LOC108267120 coding upstream 69801 16752137 ~ 16755407 (+)
b3gat3 b3gat3,LOC107750592,LOC107691906 coding upstream 75084 16746698 ~ 16750124 (+)
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding downstream 18515 16939461 ~ 16960809 (+)
LOC113539921 NA coding downstream 264075 17185021 ~ 17189452 (+)
si:ch73-211e3.1 mamld1 coding downstream 287557 17208503 ~ 17275182 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding downstream 358540 17279486 ~ 17307870 (+)
mtmr1a mtmr1 coding downstream 387675 17308621 ~ 17329546 (+)
G65663 NA non-coding upstream 54365 16770605 ~ 16770843 (+)
LOC113540742 NA non-coding upstream 63333 16761804 ~ 16761875 (+)
LOC113540744 NA non-coding upstream 63561 16761572 ~ 16761647 (+)
LOC113540743 NA non-coding upstream 63870 16761266 ~ 16761338 (+)
LOC113540745 NA non-coding upstream 64101 16760981 ~ 16761107 (+)
G65938 NA non-coding downstream 436392 17357338 ~ 17372139 (+)
G65939 NA non-coding downstream 437540 17358486 ~ 17359569 (+)
G65927 NA non-coding downstream 481613 17402559 ~ 17403879 (+)
G65933 NA non-coding downstream 490048 17410994 ~ 17502645 (+)
G65934 NA non-coding downstream 510131 17431077 ~ 17440372 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 454251 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 506042 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 785224 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2166272 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2555868 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 414551 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 688546 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1079212 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1192487 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1276366 18197312 ~ 18208564 (+)

Expression


Co-expression Network