LOC113540153 (nwd2,LOC107661962)


Basic Information

Item Value
gene id LOC113540153
gene name nwd2,LOC107661962
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14576397 ~ 14622524 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936433.2
GAGAGCAAGAACGGGCTTGGATTTGGGAGCTCTTAAAACTTCCAGCTCGTGGAAGAGAGCAGCTGCATTTATCGATAGGCTGATGAATCCAGACCCCTCCTCctattcttcctcctcctcttcacaAAAACGGCTCTCGTGCAGGAGAGTGGGTCTGCCATGATAAAGAGAGACAGCACCGCGATCCCCACTAGACAGCGCGAGTCCGTCTCCCTCGCCGTCATTTAATCGGAGGAAAGCGAGAGAGCGCGGGCACGATGCTGCCTCTCACCGCCGGCTCTcgcgcagcagcagcagcagcagcatcttGCTCAGGCGGAAACCAGGGCTGCTGCTGATTCCTGCGGATCCGCGCTCTGCTCCTGTCAAACGCTCGGAAATGAAGAGAATGAACCCTCGCTGGAAGTCTTCCCCGATGTGGCCGTCCGGAGTGGGCAGCAGATTGCCGTGTCCTCGCGAGTCGGCGCTGCGCAGAGCGGCCATCAGCGGAAACGTGCTCGCGCTGCCGCCGTATCACGTGCCCACGGGCCGGAGCGTGCGCGTCTTCATCTGCGCCAACCCAGACGATACGGAGGCAGAGAGGAATGCCCTGAAAGAACACGTCTACCCCAAGCTGAGGGACTTCTGTAGAGAAAACTATGGCATTGAGTTCCAGgtggtGGACCTGTACTGGGGTGTGGACCCAGAGGAGTGGGACAGTCCAGAACTACAGAGACTGCGGATGAAGCTTCTAGAAGAATGCCTGAAGACATCTGCCGGTCCATGCTTTGTTgGTTTGGTGGGGGAGAAGTATGGCAGCATTCGTGTTCCAGGGGAGGTGGAATCAGCTGAGTTTGAAATGATTCTAGATGCGGCAGTGGAAGCGGGTCTGGATACACGGATCCTGGAGGAGTGGTACTGCCGGGATGAAAACTCAGTACCACCGGCATACTACCTCAAACCCAAAGCtgagatgctgaaaaactaTCAGAACTCGatGGAGTCGAGCAGTGTTGCAAAGGCCAAGAATGCTAAGGCATGGAGAGCAGTCTCTGAAGAAATCAAGAAAATCTTCAGAACTGCAGTCCTACAACTACAAGAGAAAGGAACCATGAAAAGTGCACAGGCCAAAAAATTTCTTTGTTCGGCACTGGAGGATGAATTGGACTTTGCTTTAGGAAAACAGACCCCAGCCTTcctgaagaagtgtgtgtgttacattcgCAAAATCTCCAACTTCGACCGCTTTGCCAAGATCCCAGACATGACCCGCTACATGGACATTATTATGAGTGGGGATCGTGTCATGAGGAACCAGGAGGCCTATGAGCGGCTTCTGAAAGTCCGAGATGAGTTTATCCCCACAATAGTCGCAGCATCCAACCTCCGTGTCTATTCCTCGGTCACCCATTGCGACATGAAGCTGGGCTACTCCCAAGAGGTAGAGAGTCACTATGTGGAGGGTCTGTGTAAGCAGTTCTACGAGGACATGGTCGACATTATTCAAGCTACTGTCCAACAAAACTTTGACACAGAAACAGATCCACTGTACGACGAGATCATACAACATCTTTCACTGTGCAAGACATTTTCCTCGTTTTATGTGTATAAAAGTGAGGTCCTGGATATGGTGCAGGAATACCTGTACCCATCCAAAGGAGGGAGAATATTGCCCCTAGTCGTTTATGGAGGGCCGTGTACAGGAAAGACGCTGTTGCTTGCTGAGGTAGCTAAACAGgcATACTCATGGCTTCAGAAAGAAATGGGGCCAGAAACAGATCCTGTCATCATTGTTCGCTTCATTGGTTCCTCCGACCTCTCTACAGACCTCCGCAACCTCCTCCAAAGTATTTGTGAGCAGATTGCCATAAACTATCACTGCTTAATCCACTACCTACAAAAGATTGAAGAGATGAGGGAATTGTTGATTAACCTTCTGGGAGAGTCATCCTTCCATCGACCCCTAGTGATCATACTGGATTCCTTGGAACAGCTGTCAGAAGCAGATGAGGCACGTAAGCTCTGGTGGTTGCCTATCCACCTTCCTTGTACAGTCCGCATTGTGGTATCGACTTTGCCTAACAAACATGGGATACTACAGAAATTACGTTGCCTGATTCATGATGAGGATTGCTATGTAGAATTGACACAAAGAGACCGTAAGGCATGTAGCCAGACACTAAAACAGCAACTTCTGAGTGTCAAACGAAAAGTAACCTCAGGTCaacaaatatatgtaaatgaagCCCTGGCTAAATGTACACTGCCCATGTTTGTCAACCTTATCTATCGTGAGGTGGTACACTGGCGCTCACACAAAGATGTTGATGAAAAGTCCCTTTGCTCAACAGTACATGAGAGTATAGAACATCTCTTTATTTCCATTGAAAATAAGCTGGGGTCCCACTTTGTCTTTCGTGCATTGGGATACATTACAATGGCACGTGTAGGGTTGACGGAGGTGGAACTGGAGGATATACTATCTTTGGACAATAGTGTACTTGGAGACATCATGGTCAGCTCAAATCTAAAGAGTCCACTGCGAATCTCCTATGATCTCATTGCTCAACTAAGAGAAGAGCTAGAGGGTTACTTGGTGGAGCGTCAGGTTCGGAACGTAACCCTGATGGTGTGGGCAAACAGGCATCTGCATCTCATTGCACAAAAGCTGTATCTCAGTAATGAAGAAGATGTGCATCAAATGCACAGCCTTTTAGCTGAGTATTTTCTTGGGGTATGGGCAGGTGGTAGAAAGAAGATTTTCCACTGTGACAACAATCACTTTGCCTCATTAAACATCTCTCAGCATCGGAACCCTCACAACCAACAAAGCCTTCGTGGCCATGACAAAGCCTCTGCTGACAAGCATTCTTATGACCGGCAAACACCAGAACAACCTTGGGTGTTCCAGTGCAACTTACTTGAGCCAGATATCTTCTTTGTCAATCACAGAAAAATGACAGAACTGTTGTTTCATTTGACAAGGAGTGGGCGGACAGATGACCTCATGTATGGTGTCATCATGAACTTCAGTTGGCTGTATACAATGATAAAGATTGGACAATTTGACAAGGCCTTGTCAGACATTGACTTGGCGTACAGCTACTCACAGGAAAAGGAGCTCAAGTTCCTTGCTAGCACACTACGAAGTATAAAGGTCAAAGTAATCAAGAACCCTGCCTCACTATCTGCTGAGCTTCAGCAAAGACTTCTTCCTGTGGTCACATCACTTCCCAAACTCCGACATCTCTTACTAGAGTGTGACAAGGATGGACCCAAATACTGCTCCATAGTGCCACTCCACTCTTCCATGGATGTTACATACAGTCCTGAGAGACTACCGCTGTGCTCTAGTTATATGCAGATTGTTGAGATTCTACCTACCCTGGCTCCCAACATTGTAATTGCAGCTCTTGAGGATGGCTCAGTCAGTACATGGGATGTAGAGAGCAGACAGTTGCTGAGACAGATCGACACAGCAAGGTCAGTTGTGCTTGGTGTCAGGCTCACCACAGATGAGAAGTACCTTGTTGTTGCCACTACAAAAAACACACTACTAATTTATGACAACCATAAATCGTGTTTGTTGTCAGAGGTGGAGGTAAAAGGCTCAAAGCACTGTGGCATCACAGGTGGGGTGGCATTCATTAATGGATTTACCTTATCCAGCCCCCATGCCTTAGCTTGGCTGGAGGCTAGTAAAGATGTCAATGTGATTGACTTGCAGTATGGTTGGCCCCTATACCAGTTCCATTGCTGGTACGAAGTAACCTGTGTTGAATGCTCCCCAGATGGGATGTATGCTTTCTGTGGGCAATATTTAAACACCACCACTATATTCCACCTAGGAAGTGGGGATAAGCTTGCAACAGTGACCTCTGAGTTTTCTGGTGGATTTGTGAAGTCCATCCTGGTTCTAGACACAATCCATCAAATGGTGATGATTGACAATGAAGGTAGTCTTTCTGTCTGGAACACCAAAGATATCACAAATCCCAGGCTTATGGAGGACTATGACTGCCGAGGGGATGATAGTGAGGTGGTAGGTATAGAATTATCTGAGGATCAGAAATCAGTACTTATTTGCAAAGCCAGAAGCATTGAGGTGCTTGACACCAAGCTTTGGAAGATGGTAGAGAAGTTTAAGGCCAAACGTAGTGAGAGATTTGTGGCTGCTGTTCTGTCAAAGAATGGCCAAAGTATTGTAGCATCAATGGAAAATACTTCATCCATATTTGTGTGGAGAAGAGACAGTGGGCAGTGCATGGCTAGTTTAATAGAGATATCAGGAGCCATCGTCAAGTTGATCAAGTCAACACACCATAACTTGCTTTTGTCCGTAGCCAGCAGTGGGGTTCTCTCAGTTTGggatattgatattattacaGCAATGTCAAACATTGACAAAACAGGGAAACGGATCCAAAGTGTACAGCTATCAGGCAGGGAAGACTTTGTCTACACAATGGATGGGTCTGAAGCCATCCATAAGTGGAACTTCAGCACAGGTTTCATTGAGATGGTGTTTAAACATGAAGGCCTTGTGGAGAACTGTGTTCTCACCACATCTGGTGACCTTATGGTGACATCTGATGACAAATGTAGCCAATACATCTGGCAGACTGCCACAGGTGAAAATATCTTCCGGATCAATGGCCAAAAAATATCCCAACTTCTCATCACCCATAATGACCAATTTGTCGTTTCTCTCTGTGAACAAAATGCCTCACGTGTCTGGAGGCTTGCTACTGGACACAAAGTGTGCAACATCCTGGTAACCCTCCAGCATGCTCTCATCACCACAGCCAACACTTTCCTGGTTGGTACAACTAAAAACAAGCTGTTGGCTGTCAGCTTGTGGTCCGGCAGTGTATCCAAGAAGTTTGTCTGTGATGATGGGATCACAATCATAAATTTTAAGCTAATTCCAGACAGTCCAGACTATGTTGTCTTCATCACctccacagagactgttttCATATGGAGTGTAGCTGATGAGTCTGTCTGCAGAAGGGTGCAACTGCCAAGCAACTTCTTGAAGAACTTGGAAGACTTCCAAATCTCACCAAATGGAAAGTTGGGAATTGTATCTAAAGGAGATGACAACATTAATGTTCTAGATCTACACAGTGGTAAACTGCGCTTAGTCCATGCTGCAGGCATAATATGGAGGCAAAAGTTATCAAGAGATGGACGGTACTTGGTCTACATTTGTTTCCGAAATTGTGATGAGGACGATGATGCAGGTGTGGTTTCTAGTTTAATTGTCATGCGACTTGCTGATGGAAAAAGTATTGGTACCTGTTCTCTCTACAAGACACCAACCTACTTGTGCCTATCACAACGAGCACTCAACATTATTATTGGCTTTGAGGATGGCAGTATTGGGACCTACACAGTTGTGGACCGGGTGGATGCAGCCCTCAAAATCAAGATTGCCACCTCTAACAGCCGGCAGATTGTTAACAATGCCTCACAGAAAATACGACCCAAGTGCAGCACCAATGCCTTCAAGACCATTGCTGATTGCATGTGGAGGGAGTCAACTGAAGTTTTCTCTCGAGATAGCCCCATCAATGTCTCCGACAGTGGGGAGCCtgaaacaacaacaccaacaaaaaAGACGGAGTTACTGCAATGAGAATTCTTCAGGAAGTTAGTGGTATAGATGAATGGGACCAGATTTGGATGCAGTTGATTCTTGTTTACAGCAACCTTGTGATTCAGTTGCACAAATCAGTCCTCTGGGTACTACACAGTTGATACTGGCCAATTACTATCACGCTGCAGTTGTATTTAGTCAGGTCACCTTCATCCTGTTGTCCCTCATTTGGTGACTTGTCATACTATCTGTTATATACATCTTtgatatattacaaatacatcGTTTTATTCAAAACAAGCCATAATATTACTTTATACAGAAACATAGAAATGGTATATATTTGTAGCCATAACACATatatgcttttttcttttcttttttt

Function

symbol description
nwd2 Orthologous to human NWD2 (NACHT and WD repeat domain containing 2).

NR:

description
PREDICTED: NACHT and WD repeat domain-containing protein 2

GO: NA

KEGG:

id description
K24734 NWD; NACHT domain- and WD repeat-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936433.2 True 5966 mRNA 0.46 9 14576397 14622524

Neighbor

gene id symbol gene type direction distance location
LOC113540157 LOC108267639,LOC108428574,LOC101077706 coding upstream 196846 14356048 ~ 14379551 (+)
ppp1r14bb ppp1r14b,ppp1r14bb,LOC108268202,LOC107583286,LOC107721662,LOC107661967 coding upstream 322507 14229973 ~ 14253890 (+)
slc8a4b slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969 coding upstream 425108 14092494 ~ 14151289 (+)
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding upstream 496361 14064494 ~ 14080036 (+)
nagk nagk,LOC107697250 coding upstream 536790 14035207 ~ 14039607 (+)
adam19a adam19a,LOC108267694,LOC108428568,LOC107708434 coding downstream 63730 14686254 ~ 14761565 (+)
paqr9 paqr9 coding downstream 201578 14824102 ~ 14829911 (+)
zmp:0000000660 arap2 coding downstream 266776 14889300 ~ 14968601 (+)
cckar cckar coding downstream 1281831 15904355 ~ 15916921 (+)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 1369651 15992175 ~ 16000945 (+)
G64462 NA non-coding upstream 279925 14296270 ~ 14296472 (+)
G64459 NA non-coding upstream 281136 14295002 ~ 14295261 (+)
G64308 NA non-coding upstream 519510 14056527 ~ 14056887 (+)
G64095 NA non-coding upstream 533983 14041968 ~ 14042414 (+)
G64105 NA non-coding upstream 558728 14017286 ~ 14017669 (+)
G64668 NA non-coding downstream 57682 14680206 ~ 14680813 (+)
G64673 NA non-coding downstream 139811 14762335 ~ 14762596 (+)
LOC117597182 NA non-coding downstream 354802 14977326 ~ 15011493 (+)
G64963 NA non-coding downstream 578785 15201309 ~ 15201528 (+)
LOC117597190 NA non-coding downstream 883768 15506292 ~ 15556924 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 307057 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 856943 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 1014131 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 1101360 13468552 ~ 13475037 (+)
G63903 NA other upstream 1157701 13418377 ~ 13418696 (+)
zgc:194930 LOC108268002 other downstream 9506 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 1400670 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 1687689 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 1745432 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 2712973 17335497 ~ 17401388 (+)

Expression


Co-expression Network