LOC113540157 (LOC108267639,LOC108428574,LOC101077706)


Basic Information

Item Value
gene id LOC113540157
gene name LOC108267639,LOC108428574,LOC101077706
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14356048 ~ 14379551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936436.2
ctccctgtatCAGACGCTTTAACAGATGCGCTGAGCACAGTTGCCTCTCTCTCGTTCTTGCGCTTGCTCTCGCACTGCCCCACTTGCAGACTTTTGCAGGTGGGGGAGGACAAATGGCAGAACCAACTACCAGAAACAAACAATCAAATGGATGAAGCCAGGACAACTGGAATAAGAGAAATCAAAATACAGATGGGAACTGCTAAAAATAACTGCCACGCCAGAGACTGCCTTTAATAGCATCCATCatgtctcttttcttttttctatcctCTTTCAGGATACCTGTTCTGATCCATGGGattaaaaatgacttaaaattcAATCAACGGCCGAGGAGAGAGACGGAGGGATGAAAAAGAGGGTTTGTCCTCTGAGCAGATTCAGCGGCATACAGCTGGTGAGAGCAAGAGTGAGGGatcattagagagagagagagagagagagagagagagagagagagagagagaaagagagagaaagaaggtcTCTTCTCTTTTAAAGGAAGTGACTCGTCTGACTTCGCTTTCCCTCAGGACTATTCTTCAGTCAAGGTTCAACGAGTCCAGTAAACAgGGGACATTTTCTGTTACAGGACGTTAAGGACCTGCAACTCGGCGTCACTGATGCTTTGCACCACAAGACTATTGGAAACATATAAGGAAGATTATAAAAATCtgttagagagacagaaaacaagAAGGAGTGAGGGATAAGCACAGACAGGTTAAAATGAATCGATGAACAGAAGAGGCAGGTGGAGAGAAGGAAGAGTGAAGGAAGTGCCAGAAAAATTAAGTGGGGGAAAAGCAgaagagagacagcagagcGAAAAACAGGCTGGCAACTGGAAGACCCTGCGAGGAAACGTGCTGTGTGTAATGACCCCAGATGAGAGGCTCACAGCCCGGGAACATTCTGGAAAAACAGTGAATAAAGTTCAGCGTGTTTCACAGCAAAGCTTACATGGATACAAATGTGCAGCTGCAGGCCTAACGCTGTCTAaatcctggtgtgtgtgtatgtggagagGACAGACACTCCGGGCCAGAACAGAGGATACACACCTGGACATGGATATGGGCttgatcacacacatatacacacctacacaaagGCCTGGAAACACACtcatgacttcagacatgagcTGATTGAGTCCTGCGACTGACACAGACAACGAAGgTCTGTGGATTAACCCCCCTTCTACCATGCAAGCCTCCCCACCCCCTCAATCTGAAAAATCACACCCATCCCTCATTTTACATCACCATTCAAGTAAAAcaccctcctcctctctcccctTTCATCCATCAACCCATTCTTACTCATCCATCCTTAAGCCTTCACCCAAACTCCTACCATCAGATACACCTCTTTGTCCAAAATACATCTGTGGTTTTCTTGCCCAGTCCATACCATCCCCAAGCCCACATCTACCCTCACTCCATTGGCTGACACTGGTCACATGTGCCTGCTTGCTACCTGCTTTGATTGGACGGATTCCTGGAGCACTGGCAGGGGAAACGTGGGGCGTAGTTTCTTCATGcccatttcactgtgtgtgccGGAACCTTTCAGAGTCTCTGAGCACACTCTGTGCGGACAAAGGCCTCCTCTTCGTTCCACCAAACATTGACCGCAGGACTGTCGAGCTCCGCCTTGCTGACAACTTCATTAGAGAAGTGGGTGGCACGGACTTTGTCAACATGACCGGATTGGTGGATTTAACACTGTCACGAAACACCATCAGCTACATCAAACCAATGGCATTTGCAGACCTTGAAAGTCTCCGCTCTTTGCACTTGGATGGAAATCGACTGACGGCACTTGGTCCGAGAGACCTAGCGGGTATGCTGAACCTGCAGCACCTCATTCTAAACAACAACCAACTTATCAACATTTCCTCTGATGCCTTTGATGATTTTCTCCTCACACTGGAAGACCTGGACCTGTCTTACAATAATCTGCGCAAAGCACCATGGGAAGCCATCCAGAACATGGCCAGCTTACATACGCTCAATCTCGACCACAATCTCATTGACCAGATTGAAGAAGGTTCCTTTGGTGAGCTCTACAAACTGGCTCGGTTAGACATGACTTCCAATCGCCTTCAGACTCTACCACCTGATCCCCTGTTTGCCAGGTCCCAGACAGGAGTGATCAGCCCTACACCCTACAACTCAGTAATCAGTTTGAACTTTGGGGGAAACCCTTTGCACTGTAACTGTGAGTTGCTTTGGTTACGGAGATTGATTCGGAGCGATGATATGGAGACTTGCGCTACTCCGATCCACCTGGCAGGACGCTACTTTTGGTCAATACCTGAGGAGGAATTTACCTGTGAGCCCCCGCTTATCACTCGTCATACACATAAACTCTGGGTCTTAGAGGGCCAAAAGGCAACACTCAAATGCCGAGCTATTGGAGACCCTGAACCAGTAGTGCACTGGGTCTCACCTGATGATCGGATTATTGCTAACTCTAGTCGTACCACCTCATTCCGGAATGGGACCCTTGAATTCCTAGTGACTGTGGCCCGTGATGATGGCGCATACACCTGTATTGCAATCAATGCTGCAGGTGAGGCCACTGCGATTATCGATCTTAAGGTCATCCCTCTTCCTCACCGAGGGAATGGGACAGTGTCTTTAGCCCGTGACCCAGGGTCATCAGATATTACCAGAGGAAAAACATCCAATGGGCAGACCCCCAGCCAGGACACTAACACAGACCCACAGGAAGGTAGAGAAGAAGTAGAGGCAGAGGACGGAGGGAGTGAAGGAGGAGAGGACCAGTTTGTGGAGGTACAGGGGGTGACCTCCACCTCAGCACAGGTTCGGTGGGATATAGGCAGACTTTCAGGTGCTTACTTGGTTTGGATGTACCAGATACAGTACAACTGCACTGCAGACGAAACTCTGGTGTACCGaaTCTTGCCCTCTACGAGTAACAGCTTCCTCCTGAAGAATCTGGTCTCAGGGGCGGACTATAACCTGTGCGTTTTGGCCATTTTTGATGACACGGTCACCTCCATGGCTGCGACAAAGGTTCTTGGATGTGCGCAGTTCAGCACCAAGGATAACTACCCAGACTGCCGTTCACTCCAGGCCCACTTTCTGGGTGGGACCTTGACGATCCTGGTGGGAGGAGTCGTCGTGGTTACTCTACTGGTGTTTACCGTGGCGCTTATGGTGCGTCACCGGGTCTGCAGTAACCACAACAATCATCATGGCGCTAGTGGGGAGGTCGGATGCTCAGGATCAGACTCGTCAGCCCCAGGGAAGGGAGCCAATGTTTTTTCACAGAGAAATAGCAGTGGGGAGGTAATGATGGTGGTCTTACCTAATGGGCTTCCTCAAAAACAAAGAGGTGTGGGAGGAGGGGCGGAGTCATCATCGAAGCTATCTCCCACTCAGAAACCCCAAACACTGCCTAAGCCCAAAGTGAATCTGGAGCAGCTAAAGGCAGGGGCAGGATCACAGAAGGCACTTCCACCTTATACCCCAGAGACTGAACGAATGCCAATGTACTACACCCCCAAGAAGCCGTCCCCATCTACACTGCCACGCCAGTCACGTCAGTCAGAGGCAGGATTGACAAAACTCCATTCCACAAACAGGGATATAGAGAAACAGGCTAGTTGTAGCCTTGTCCTCCCATCTCACAGTGATCGGAGGTTCAGCACAGGAGGGTCTGTTGTAGTCCGCCGAGGAGGCAGAGACAGCGCATGTAACTCAGAGACAGCCTATCAGAGCTCAGGTCTAAGTGTTGCACGGCACAGACGCAGCTCCTCGTTCGACATGGGCAACATGGCGGCCACAACCTGCTATAGTTACGCCAAGCGGCTGAGTGTCATCTGGAGCAAACGGAGCCAGTCACTACATGGCATGCTAGCCCAGTGCGCCTCCACGAACAGCATctccaccaccagcagcagcagcggggATTTCCATGTGAGACACACACGTGGCGCCATCCACGCCTACAAATCCAACACCATGCCTTCAAGCATAGCCAGAACACATACAGAGCAAAGTAGAGACAAAGGTAAAGAGAAAGTAAAGGCAAAAGATAAAGGGGAAGAACTGGAGGAAAGTGTGGTGTAGACAGAAAGGGCTACACGTTGAAGCAAGAAATGTAGAGACCTTAAAAATGAGAGGGGTGACTGTGGACAGACATAGATGAAAGAAGGAGAGTTAAAGAGTGCAACATGAGGTGGGATACGTGGGAGTGGAAGGCAGGCTAAGGGAAAGGTTGAgtggagagatgagaggtggAGAAAAGATGTCACGGTAGAAAAAAGGAACAGACATAAAAAGGTACAAGGAGGGAAGTAGGAGGAAAAAGGAGAACAGAGTCAAGAATCAGGCTAATGTCAAACGGACTAAAAAAGAGTGAACACATTGGTGCATATCCTACGGGACTGGTGTCTAAGTGGATTCTGAACCAACACAGAAATTCAGTCTCTCCAATGAGCCTATAAAGTGTGAATAGAGGAGCTAAATAAAGACCAGGTATTTGGCCTATtttcaaacaacaacaaaaaaaaacttctaacGCACGCGGGCAAAGGGACAGACTGATGGCATTTGAGCAATGATCAATTAGCTATCCTGTCACTGGGATTATGGAAGCAGAGGCGCAGCTGGAAATGCCGAGTCATGCCCAATCAATCGGATATGAtccacagatagagagagagagagagagagaaagctgccTTTGCAGCAACCTGGGAGCAAACACAAAGAGGCATGGGCGTGAAATGCAGGACTGGAATGATGATAAAATGATTGGGGACAGATTTAGCGCATAGACAAATAAATGACCATTGACTGAGGATGAATGGGATCAGTTACAgtttgtggatgtgtgtgtgtgtgtgtatgtgtgcatatggAGCAGTCAGTGTATATGGAAAAGGAAGAAGACTCCTTTTGTTTACTTCTGTGATGCTCCATTTAACTATAATCATGCAGACTGTGGTCTGATGAACTGATACTGATCCGTTATTGTGGCCAGGGtcattaaaaatactataagGTGTCATTAAGACTATATagagagattaaaaacaaaaaacaactgagaggaagaaacaaagaaagaataaatcCCTTGAAAGTCTGTTTTGTTACTAATTTTCATGAGTGATAATAGAgctaaaaaatacaattttgttGCAACAATCTTTCATGATTTTTAGTTATCAATATGATTGTAATTATCATTGAGCTTAGatgaaaagagaacaaaattaGCAAGttcaatgataataataaccatCCTGAtgataatgtttttgtttgatttccATTTTGCCAAAGTAAATATTGTTACCTTGACTTGATATtctaaatgatgaaataaaacagaaaaataagatca

Function

NR:

description
PREDICTED: leucine-rich repeat and fibronectin type-III domain-containing protein 4-like

GO: NA

KEGG:

id description
K16357 LRFN4, SALM3; leucine-rich repeat and fibronectin type-III domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936436.2 True 5391 mRNA 0.47 4 14356048 14379551

Neighbor

gene id symbol gene type direction distance location
ppp1r14bb ppp1r14b,ppp1r14bb,LOC108268202,LOC107583286,LOC107721662,LOC107661967 coding upstream 102158 14229973 ~ 14253890 (+)
slc8a4b slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969 coding upstream 204759 14092494 ~ 14151289 (+)
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding upstream 276012 14064494 ~ 14080036 (+)
nagk nagk,LOC107697250 coding upstream 316441 14035207 ~ 14039607 (+)
m1ap m1ap coding upstream 339923 13973996 ~ 14016125 (+)
LOC113540153 nwd2,LOC107661962 coding downstream 196846 14576397 ~ 14622524 (+)
adam19a adam19a,LOC108267694,LOC108428568,LOC107708434 coding downstream 306703 14686254 ~ 14761565 (+)
paqr9 paqr9 coding downstream 444551 14824102 ~ 14829911 (+)
zmp:0000000660 arap2 coding downstream 509749 14889300 ~ 14968601 (+)
cckar cckar coding downstream 1524804 15904355 ~ 15916921 (+)
G64462 NA non-coding upstream 59576 14296270 ~ 14296472 (+)
G64459 NA non-coding upstream 60787 14295002 ~ 14295261 (+)
G64308 NA non-coding upstream 299161 14056527 ~ 14056887 (+)
G64095 NA non-coding upstream 313634 14041968 ~ 14042414 (+)
G64105 NA non-coding upstream 338379 14017286 ~ 14017669 (+)
G64668 NA non-coding downstream 300655 14680206 ~ 14680813 (+)
G64673 NA non-coding downstream 382784 14762335 ~ 14762596 (+)
LOC117597182 NA non-coding downstream 597775 14977326 ~ 15011493 (+)
G64963 NA non-coding downstream 821758 15201309 ~ 15201528 (+)
LOC117597190 NA non-coding downstream 1126741 15506292 ~ 15556924 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 86708 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 636594 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 793782 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 881011 13468552 ~ 13475037 (+)
G63903 NA other upstream 937352 13418377 ~ 13418696 (+)
zgc:194930 LOC108268002 other downstream 252479 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 1643643 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 1930662 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 1988405 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 2955946 17335497 ~ 17401388 (+)

Expression


Co-expression Network