tnk1 (tnk1)


Basic Information

Item Value
gene id tnk1
gene name tnk1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17936846 ~ 17950388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936444.2
GAGAGGGAAGAGGCGGAGTGCAAACTCAGCGACGACTTCAGGTGCAATCTGTTGGGTTACCACCAACCACTGGATCACTTCCAGGATCGCAAAACTATCAGGACGGGAAATACTTAAGTAGGAATGCGACTTCAGAGAAGACTAGGCACTGCTTCTTGCTAAAGCTCTCACACTAGGCTGGATCCAGAGCTACGAGTCACATTCAAACGAAAACCTGTGAGAAACGAGCTCGAAACCGCGAACTGTGTGAAAGCAGTGCAGTTAAACCTGTGACAAGTTGCGGCTAGAAGCTAACAGCCTGCTCTGTAAGGCTTTGGAAAGAAGATTCCTCGAAGAAACTCGGACTTCCTGTTTACCTGCCTATTGCCTGCTGTGCTGAACAGCCATGGAATTATGATGGATCAAGACACTCAGTTGCTGTACCAGCTTTTGGCAGAAGTGCAGCTGGAGCGATTTTTCCTGAAGATCCGTGATGAACTGAATGTGACACGTATTGAACACCTGGATTATGTCAAGGACACAGATTTGGAACAGATAGGCATCAGGAAACCAGGGCAAAGACGATTATGGGAAGCAGTCAAGCGTTACAAAACAAATATGCGGCCACGGTCATGGATGGCCAAGGTCTTTCGTGGACCAGAAGGAGGTGACCAGTCGAGTGGTGGTGTGCCTGGGCCAGGGCCAGACGTAGTACGAGCTCTTACCTGCCTTATCAAGGACAGTGAGCTGATGTTTGGGGACAAGCTGGGCTCAGGCTCCTTTGGGGTGGTGAGGAAGGCAGAGTGGCATATGCCTACTGGACAAGTGTTGCCTGTAGCAGTGAAGACTCTCAGGTCCAGTATGTCCAGGGAGGCAGATCTAATAACAGACTTTCTGCAGGAGGTCACTACCATGCAGTCCCTGGACCATCCTAATATTATCCGTCTCTATGGTGTGGTCCTCACCCAGCCTCTAAAGATGGTGACAGAGCTGGCTACTTTTGGTTCTTTGTATGACATAGTCCGTATGCGGCGGGGGATTTACCCACTGGCTCGTCTCTGGCTCTTCAGCACCCAAATTGCTGCAGGAATGGAGTATTTGGAGTCACGTCATTTCATTCACAGAGATCTGGCAGCCCGGAATGTGCTTCTGGCCTCCAAAGACCTGGTGAAGATAGCAGACTTTGGCCTTATGAGGGGCCTGGGTCACGACAAAGACCACTACATCATGGGAGCCCACAGACGCATCCCTTTTGCTTGGTGTGCTCCTGAGAGTTTGCGTGTGGGCTTTTTCTCACATGCCTCAGATGTCTGGATGTATGGGGTTACACTGTGGGAGATGTTCACCTACTGTGAGGAGCCCTGGCTTGGGTTGTCTGCAAGACAGATCCTGTTTCGTGTGGAGCGGGAGGGAGAGCGCTTGCCAAGGCCTTCTGACTGTCCTCAGGAGCTCTACAGTGTGATGCGGAAATGCTGGGCCTGCAATCCAACAGATCGGCCCACATTTGCCCAGCTCACCACTTTGGTGGCTGAGGCTCAGCCTATGGAAGTGCGTGCATTACGGGATTTTGCAGAGGCCAGAAAGCTCACTCTACAGGTCAATGATACAGTGACTGTCATAGACCATGGGCTGGATTTGTGTGAGTGGAAGGGTCAAAACCAGAGGACACTATGTATTGGTTGGTTTCCTCCAACACTGACCACTTCCTTTGTTCCTTCAACGGGACCACTCAGTCCTAATTCTGGAGCTGGTTTCATTTCTTCACCACTCAGAGGAAGCTTACAGCACACTGGACATGGCGACATCAATCCAGAACGCACCTGGGGAGCCCCAGAACGACTTGACGaCCctggaaactggagaactccTTTGGTGAGGGAGAAGCAAGAATCCAATCTAAAGAAAATGGCAGGAATGTCCCGCAGTCTAGAATCTGTCCTGGGCTTCAATCAAAACAAGGGTCAAGGTGGTAATGGTAACTTTGTTCAGCGAGTTAACGAACAAAAACACATCTCAGGTGCCCTCGTCCAGGACTCTCGCAGGTTCAGTGATGCGAGTGGCATCATCCCTCCTCCACGGCCACCACAACCCAACTTCAAACGCTTAAAGCATCAGAACATGATTTTTGATCGGCGAGTTGCAGGAAATCCAGTCCCTTCTTGGTTTCTTCCTCCTTCACATCCAAATGTGCAGTTCCAGCCACAGCAGCAGACTAGAGGTGTTACCAACCTAACCAAGATGGCCCATCTGGCCAAATCAAGCCCCCAGCTAGATAGCGACATGGatatggagaaagagagagagagagaaagggagcgagagaaagaaagagagaaggtaCGGGAAAGGTACCCACCACAACAGATCCAGGTAGATAAGGAGACCCTCAAAGCACAGGTTCAGGCAGCGGTTCATGGAGTAACTATTGAAGAAGTTCAGAAAGCCCTACAACGCAATGACTGGAATCCAGTGAGGGCAGAGCAACAGCTGAAGGTGGAGCAGCTTTACTACATGAACCAATGCTCTCGAGAGGACTGCCATAAGATACTAGCTCGCTACAACTGGGACCTACAACAGGCCAGCCGTTTCGTTATCCGCATGGCTACTGAGAGACGCAGTGAGAGACCTTAGAAACAAGATGATATATTTCAGTCAGACATCTCAATAAAGAGATATTCTGTGAGCTACACTTCAGGATTTAAGGGCCCTGTGCCAAACAGCAAAAATGGAGCATCACTGAACTGCCTTACTGACCACTGCTGTGCCACTGTGGTGCTTGTCTCTCTTTGTGGTTGGATCATTCCCAACTATTGGGGGCTCATAGTCTAACACTACATTCAGACATAGCTTCAGATCTAGTAACACATTTCGGTAATCTGTGTTAGTCCCATTTTTGGGggaaacaaaatgcaaaatgcaggAGCAGTATTTCTGATTCATCACATTTGAGGAATAAGATAAGGTTCTTTGCTACACACCTTGCTATATGAGCAAACAGACAATACCTAGTCCTGCCCTTTTACCTGTTTTAAAGTGGTTGATTCAGTCACAAATTTTGTGGAAGATATGTCCTCTGAGCTAGAAGCTGTCCCTACATGAATTAAAAGCTGCTTGCCTTTCAAACGTCATACTTCCAAGTGTGTAGCAACTCAGCATTGCCCCCTGCCTGCTGAATGAACAAGTCAGACACCTTCATTAAACGTTTCTACCTATGGTGAATCACTCAACCTCAGCACTCATGCTACAAATGAaggatttgtttaaaatgttttacttcAGTATAAttcaagtaaataataaatggagTGGAGAGAGTGGAACAGAAACTCTGGACTGGATATAAATTTCTATATAGAAAATCTAGTTCATTTAACTGCTTTTGTTGAATATGTAATAGGTGGATAGAAAAAGATTGATTAATGTGTATATCTGAATCTGTGTTAAATTAAAACTGACACTTATATGAATGAACTATATGAACCTTTCGATGCCAAAAGTAGACAGAACTGTAGCAGGGTGTCATTTCAATTCTGGCTCCTTATATCTTTTGCTACTTGTCTTGGTTGCAAAGTGTTGCAAACAAACTGGAATCAGCACAAAAATACAGGAGTATGATCCAGTGACTTTCGTATTGCACatatattaaaatacttcatcagataaccaaaaaaatgaaaaatgaaaaaacaagagAGAATACAGATAGTTCAATCGCTAAACAGAATATTCTGACGGAAGCAACATCAGTTAAGAGATACTGTAGTCCAAAGAAAGACGTAACAGGCACCAATAAAGGCCACTGATTAGCTTTTAGGTCATTCCACAGGGCTGGGCAACAGAACAATATGCTATTGGTATCATGACAAATACACTTGgtataatgataaataaacctTTGAGTACTTTTATAAAAGTAGCTGTTACTTAAAGTAGCAAGTAGATGATTGGATGTTGAAGTACATTTTTTGTACCAAATTGCGCTgcttttacatgtttacatgtagaaaattctgtattctgtagatgttaaataaaattattcacaTGTTATTTGA

Function

symbol description
tnk1 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human TNK1 (tyrosine kinase non receptor 1).

NR:

description
PREDICTED: activated CDC42 kinase 1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936444.2 True 4034 mRNA 0.45 14 17936846 17950388

Neighbor

gene id symbol gene type direction distance location
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding upstream 37353 17894900 ~ 17899493 (+)
LOC113539925 NA coding upstream 42885 17889483 ~ 17893961 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding upstream 110320 17784990 ~ 17826526 (+)
trnat-agu NA coding upstream 172312 17764461 ~ 17764534 (+)
vgf LOC108267164 coding upstream 210437 17722149 ~ 17726409 (+)
LOC113540162 LOC108268287 coding downstream 15936 17966324 ~ 17968311 (+)
elp5 elp5 coding downstream 42252 17992640 ~ 17998216 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding downstream 64741 18015129 ~ 18019079 (+)
spata6l spata6l coding downstream 69823 18020211 ~ 18028051 (+)
rap1gds1 rap1gds1,LOC107552992 coding downstream 98901 18049289 ~ 18082430 (+)
G66169 NA non-coding upstream 17749 17904611 ~ 17919097 (+)
G66214 LOC108268343 non-coding upstream 59772 17873399 ~ 17877074 (+)
G66179 NA non-coding upstream 161537 17772553 ~ 17775309 (+)
G66159 NA non-coding upstream 189681 17740075 ~ 17747165 (+)
G66151 NA non-coding upstream 233391 17703234 ~ 17703455 (+)
G66186 NA non-coding downstream 23610 17973998 ~ 17975359 (+)
G66237 NA non-coding downstream 40047 17990435 ~ 17992247 (+)
G66263 NA non-coding downstream 141200 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 161297 18111685 ~ 18111915 (+)
G66452 NA non-coding downstream 226846 18177234 ~ 18177642 (+)
LOC113539940 NA other upstream 316767 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 535458 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1565889 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1617680 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1896862 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 49770 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 163045 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 246924 18197312 ~ 18208564 (+)
G66864 NA other downstream 906068 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2040296 19990684 ~ 20067220 (+)

Expression


Co-expression Network