LOC113540162 (LOC108268287)


Basic Information

Item Value
gene id LOC113540162
gene name LOC108268287
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17966324 ~ 17968311 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936445.2
TCTAATCACGGAATTACGTCATTTCCGACATCGGCGCTTGTTTTGAGAAGAAACATGGACGACTCAGCGAAAACTTGTCTGTTGTTTGCGCTCTCTGAGCACAGAAAGCTCATGAACAGATTCATAGTCCACGTCAATGAAGAGTtggaagaacaaaaaaagcGCACAAGGATAGCAACAGCTGCTATGCTCCGCTCGCCACATAGAGTGACCCTGAAGACTGGGACGAAATGGGAAGTCATGCCGAACATGGATGACGACACTTTTTTTCATCCTTTCAGAGTCACCAAAAGACAGTTTGATTTTCTCCTGTTGGTGCTGCAGCAGCAGGGGTTGAAAAGGCAAAAAGCTCGAGGTCAGCCAACAGTACCTGTAAGAATGAAGGTCTTGATGTTTCTGTGGTACATGGCGAACCAGAACGGCTTCAGAGACATCTCAGATAAATTTGACGTCTCTGAGTCAACAGCACATAAGTCTGTTTTGGAAGTGCTTGGCATTTTTTCCACGCTAGGGCCATCCTTCATCTCCTGGCCAAATGCAGGTAGAAAAAAAGCGTCCTCGGCTGCTTTCCACAAGCTGTGTGGCCTCGACAGAATCATTGGCGCAATTGATGGGTGCCACATCAAGATAAATCGACCAAACATAAGAGGAGGAGACTACATGAACAGACAATCATTTTATTCTGTCCTCCTTCAGGGgattgttgatgagaaagggcGATTTATTGACATATTTGTTGGACCACCAGGCAAAGTTGATGATGCCAGAATGTTGAGGGCTTCCAACTTTTATGCAGACTGGCAGGAGAAAATGGGTGAATACAGTTTGCTTGGAGACAGTGCCTACAGTGGGCAGGCTGACCCGTTTATCATCACTCCAAAGTGTGATAACGGGGCCCTCACTGAAGATGACCAGCTCCAAAACTCCAGAATCAGCTCTGGGAGGGTGGTCATAGACCAAGCATTTGGAAGGATGAAGTGCAAGTGGAGGCGAGTGAGAGACTTGCAGAACACCCGCCTTGAAAATGTGGTGATGATTATTATGGCAGCCTGTTTCCTCCACAACATGTGTATAGGTGACAATGAAATGTGTGAGGAGCACCCACAAGGCTGTCCAAGACAGGCAGATGACAATGTTTAGGCCTGGTCTACATTTGTATcatgtctgtttattttatgcacAGTTGATAATACAATTAAAAGCATTATTATGTAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108268287

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936445.2 True 1216 mRNA 0.45 2 17966324 17968311

Neighbor

gene id symbol gene type direction distance location
tnk1 tnk1 coding upstream 15936 17936846 ~ 17950388 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding upstream 66831 17894900 ~ 17899493 (+)
LOC113539925 NA coding upstream 72363 17889483 ~ 17893961 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding upstream 139798 17784990 ~ 17826526 (+)
trnat-agu NA coding upstream 201790 17764461 ~ 17764534 (+)
elp5 elp5 coding downstream 24329 17992640 ~ 17998216 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding downstream 46818 18015129 ~ 18019079 (+)
spata6l spata6l coding downstream 51900 18020211 ~ 18028051 (+)
rap1gds1 rap1gds1,LOC107552992 coding downstream 80978 18049289 ~ 18082430 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding downstream 253313 18221624 ~ 18243797 (+)
G66169 NA non-coding upstream 47227 17904611 ~ 17919097 (+)
G66214 LOC108268343 non-coding upstream 89250 17873399 ~ 17877074 (+)
G66179 NA non-coding upstream 191015 17772553 ~ 17775309 (+)
G66159 NA non-coding upstream 219159 17740075 ~ 17747165 (+)
G66151 NA non-coding upstream 262869 17703234 ~ 17703455 (+)
G66186 NA non-coding downstream 5687 17973998 ~ 17975359 (+)
G66237 NA non-coding downstream 22124 17990435 ~ 17992247 (+)
G66263 NA non-coding downstream 123277 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 143374 18111685 ~ 18111915 (+)
G66452 NA non-coding downstream 208923 18177234 ~ 18177642 (+)
LOC113539940 NA other upstream 346245 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 564936 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1595367 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1647158 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1926340 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 31847 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 145122 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 229001 18197312 ~ 18208564 (+)
G66864 NA other downstream 888145 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2022373 19990684 ~ 20067220 (+)

Expression


Co-expression Network