phf23b (phf23,LOC108413721,LOC107687050)


Basic Information

Item Value
gene id phf23b
gene name phf23,LOC108413721,LOC107687050
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17982019 ~ 17989755 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936447.2
TTCTCGCGCTGTGCTTTCCCCACTCTGTACGAGACTACATTTCCCATAAGGCCACAGTAAGCCGTTCTGTTCGGTGGGGCGCAACCACAAGGGGCTTTTCTCTCCGACAGACTCTCAGTTGACATCGACCGCTTGAGGGAGGCGCGGCGAGGCGAGGCGAATACGCACACACGGAGTTTCAAGAAGTTTTCCACTtttgatgaaaaagagaaaaaaacagatcttTACAAACTGAATCATTTGGACCGATCTGTgattgatagagagagagaacacacacacacacacagagctgcaggatGCTCGCGCACTCGGAGCCTCGGGCTTCAGTTTATTTATGCAACGCCATGAGACGAAGAAATTATCTGGCTAGCTAACTCTCTAGCAGATCGAAGTTACATTGAAAAATCCAGGCTCGATCGGAAATCGTGACATTTCTCAAACTCTCcgtgatattattatttttttacaacacTACCAAGCGAGAAAATCGACCGTTTTGTGTTGGAAAAGTGTGTTAGCTTTAGCTGGCTAGCAAGCCGGTGAATAAACGCTGCTCTGTGCCACCGAAGTTGAGCGGACCTCATCGCTGAGGTGACAATGCTCGAAATAATGTCTGAGCACCAAGATTCATTACTGAAACGCAAAACGGAGTCTCTGCCACCAGAGAGACGAAAGAGAACAGTGGAAGACTTCAACAAGTTCTGCAGTTTTGTCTTGGCGTATGCTGGCTATATCCCATCTCCAAAAGAGGAAAGACCATGGTCTCCAGCCTCCTCCAGTTCACCACACAGCTCTGGCACCTCAGGCGAAGGTGGCATGGGAGGTGGTGCCAGCTCAAATATGTCGGCAAGCTGGGGAGATGGCAACTCGGACCTACACACCATTCACACTTTCGTGCAGAAAGCCCGCGCCAACAAAAGTGTCAAGACCATGCAGCGTCTGCCTTCTGACAGCACCCTGCTGGACAAAATGAGGTTAAAGGACTCTCTCTACAAGGGCCAAGCAAGCAGCAAAGCAGAGCgcaaaaaggacaaaaagcTGAAGCGGCTCTCTCTTGGCTCAGGAGCAGGAgacagcagcagtagcagcggGGAAAAGCGCGCCAGAATCAAGCGCAGCAAAAACTCCAAGCAGCCGAAAAGCCTTAAGAAGCTTAAGAGCTCGGCACTCAGCGAGACAGACTCTGAGACTGGACTCGGCCATGGAGAGGAGCACGCGGGTCAGCCAAGAGGGCTGCAGTCCCAGAGACCCAACCTGGTGAAGTCTGAGCGTGACGAAGCAAGCAGAGATGCTGAAATGagctccagtgaaggggaaACGTGGATCGCAGATGAGGATATCATGGTGGAGTCAGGTGACGACTCTTGGGATCTGATCACTTGCTACTGTGGGAAACCTTTTGCAGGACGACCCATGATCGAGTGCAACCAGTGCAGCATATGGGTGCACCTGTCCTGCGCCAAAATCAAGAAGTCCAACGTCCCAGACATATTCTACTGTCACAAATGCAGGGAAGCGAGGCGATCAGGCCATAAAAAAGACAGTTAGAGAAGACACCTAATCCATGGAAGCTCAACGTTCCCGTCCTCCACTTTTTCTATCAAGTATGAGACGAAAACACTGTTTTTGAACTGGGATGTTCTTTTGAGACCCATGTTTTTGCGCGCCAGTTCTTCACATATTTGACAATCATATACATGGTTAATATCACGATGGGAATTTCTTCATGTTTGTAGACAAATTTGTAAACAAGGCTCTTACTCGGAGTGATCTGTCTGCCAGTTTGGTCTGATCATCAGGGAGTGTTTAGTGCTGGCTTTTATAGAAGATGTAAAAGATGATGATGTATTCTGATGTAAAAGCGTTTTACAAAACAGAAAGGAGCCTCAGAAAGCTGATGTTTGTCACTTTACATGAAGTGGTCTGTGTATAGGTTATTACTTCTGTTGCTTATCATTTTCACACACCTCAGTTTTGCTCTCAGATTTGTGATGCTTGATATTAACAGGTAGTCTTTATTAAGTGATTAacgcttttttttaatctcagtgCATGTCGGCACCATGGCAGTCCTGTCATTAACTAGCACTTAACTATCAACTCCAGATCATTCTGTGTGGGGAACATTAAATGTTGGACTTGAAATGGGAACTTTCAGATTGGAACATTTCCACTGGTTGCACTGCTGTCCTCTTACCAAGTGTAAGCAGTTTCAAATTGTGCATTAACTATTTTCGTTGGTTTACTTTTGAAGGAAGTTTTGAGACGAATGAATGATGTTTAAGAGCTTTGCAACTGCCACCTGAGTGTTGAGGCTCACTCAACACCACCAATTTAAtagttgtaattattatttgttctgttattattattataatttgtttttttttttttttttttaaaaagagcttAATTTGGGTTTTAATCTCTTGTTTGTGATCTTGTTTAAgatcacacacacccagagtGTTAGTCATTGTGGAGCTGCTCCCTGATCTGCTGTTTGAAAGTAGTTCAGAGACCAGATCTTCTTATGTACAGAAAAGAGTTTGTCACAAGTGTTGTGGCATATTTTGTTTCtaatatctgtgttttttttttgttttttttttttttgaggggtTTCTTGGAATTCCCAAAACATTAGACCCTCTCCTCCTATTTTACTCTGTAAATATCATATCCTTTCAGAACTGTACATAATATGAAAACGAAGAGAGAAGCCAAgcaaatgttatatttttggCATCTGATGTTTTCTTTAACTGTACCTGAAGAAATAAAGCCTTTTCTTTATTGGGTA

Function

symbol description
phf23 Predicted to enable metal ion binding activity. Involved in negative regulation of autophagosome assembly; negative regulation of autophagosome maturation; and positive regulation of protein ubiquitination. Located in nucleoplasm.

NR:

description
PREDICTED: PHD finger protein 23

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936447.2 True 2806 mRNA 0.44 5 17982019 17989755

Neighbor

gene id symbol gene type direction distance location
LOC113540166 LOC108268288 coding downstream 9200 17969195 ~ 17972819 (-)
LOC113540164 plscr3,LOC108267765,LOC103046260,LOC102780386,LOC106577560 coding downstream 21087 17951016 ~ 17960932 (-)
senp3b LOC108267653 coding downstream 53798 17919246 ~ 17928221 (-)
eif4a1a if4a1,eif4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC107599941 coding downstream 63146 17912572 ~ 17918873 (-)
LOC113540701 NA coding downstream 66248 17915630 ~ 17915771 (-)
slc1a1 slc1a1,LOC107691854,LOC107659129,LOC107552979,LOC107561518 coding upstream 38922 18028677 ~ 18040250 (-)
tspan5a LOC103038323,LOC107740922,LOC107659128,LOC107561515,LOC106577600,LOC107691852,LOC105022115,LOC107738333,LOC108437089,LOC102195201 coding upstream 94401 18084156 ~ 18107424 (-)
LOC113540602 LOC108267271 coding upstream 119147 18108902 ~ 18112004 (-)
LOC113539796 LOC108268300 coding upstream 153552 18143307 ~ 18177770 (-)
myoz2a LOC108267175 coding upstream 197888 18187643 ~ 18195774 (-)
G66355 NA non-coding downstream 117136 17864010 ~ 17864883 (-)
G66349 NA non-coding downstream 169493 17799122 ~ 17812526 (-)
G66350 NA non-coding downstream 173005 17801666 ~ 17809014 (-)
G66318 NA non-coding downstream 280765 17696777 ~ 17701254 (-)
G66311 NA non-coding downstream 294921 17686886 ~ 17687098 (-)
G66387 NA non-coding upstream 25389 18015144 ~ 18020809 (-)
G66651 NA non-coding upstream 396806 18386561 ~ 18386990 (-)
LOC113539972 NA non-coding upstream 509596 18499351 ~ 18514718 (-)
G67016 NA non-coding upstream 957563 18947318 ~ 18947539 (-)
G67454 NA non-coding upstream 1338593 19328348 ~ 19340529 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 142104 17792226 ~ 17839915 (-)
G66281 NA other downstream 347151 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 537831 17439477 ~ 17444188 (-)
G66053 NA other downstream 579555 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1376302 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 1060395 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 1890213 19879968 ~ 19881640 (-)
G67587 NA other upstream 1898424 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 1929725 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 1972827 19962582 ~ 19965851 (-)

Expression


Co-expression Network