focad (focad,LOC101469292)


Basic Information

Item Value
gene id focad
gene name focad,LOC101469292
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20165711 ~ 20223868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936477.2
ATTACAAATCGCTTTTTGGCTGCACGTATGACCCTTCTCGCTCACCCTACAAACTGACTGTGACGCGTTGCACTGAGTTGGAGAGCTGCAAAGTTGAAGCTGGCTAGCAAGCAGTACCGTGCGGACCGGCGACAATGATTCGAGATGACGAGTGAAACTTTAAAGAAGAGATTTGAGTTTCCTAGCTCCTTCATTCAGtcccaggctgtaAGGAGTCTGGTTACTGCTGTACTGAAGGAGAAGGGCCAAAAGGACAAGATCACAGAGTCCAATACACAGAGCCCGGCTCTGGTGGCTCTGTGGGAGcagtgcagcagtgagagtgtggTGGTGCGCTCGGCTTGCTGTGATGCCCTGGTGCTGCTGGTGGAGCAGGGCCACGCTGACCTGCACTACGTCCTCAACAGCATCCTCAACCTCCTGCCCTCGGCACGAAATGTACAAGGGCTGATAAAGGTGGTTGGGAGGCTGCTACAGATCCAAGCGAGTCAGAgggacaaaaacacatccttCTCTTGTCCGTACTCGATCAGGAGCTGCCCTCACCCGTACATCACAGTGCTGGAGAATCGGCCTGATTGCTGGGCTGCTCTTCTGCAGGAGATTGATGACTTCATCCAGCTGGCTGCTGACAATGACGAGCCGTTGTTTATCTCCATGTTGGCTCCGTTCCTGCGTTACCTTTACTGTGAGCCTCAGAGGCTGTCAGAGAATGCGCTGCTCAGACACGGACTCCTCCGAGTGCTGCTGCAGCGCCGAGAGGTCACTCAGGGTCACAGCTTAGCCTGTGCACGGGTCACCCACCAGATCCTGCACTGCCTTTTCAATTTGTTCCCTCATATACTGGTGGACAGCATTACAGCTGTGGTGGAGATCAGTTCCATGGCCGAGTGCCTAAGTTCTGCTCTGCTGGCCGAGCCGGAGCACTGGAGGACTGAGTTAGCGCAGCTAGCACTGCAGCTCATGTGTGTCTGTCACCTCAGCCACCAGCTGGGAGGAGAGCTAAGGTCTTTACTCCACACCTTGCACTGTCTCCTGCCTGTCTGTAAAGAGgatCTCCCGTCTGAGCAAGTGATCATGGGGATCTCGCTGCTCCTCCTCAGAGCCTCGGCCTCACAGCAGACTGCCCTCCTGGAGCTCGCTGTAAAGATCGTTCCACCTGATGAGAGACCTATATGGGGCGGGTCATTGCTGGTGATGCCACTGCTGCAGGTGCTCTCCTGCTCCACTCTCATGGAGGCATTAACCGACCCTCAAACACAGGCGAAGAATCAAGGCCTGGCCACTTCACTGCTACAGAcgattgagagagagacaagcagTCCGGTTCAGAACAGCACACAGCTCACTCTTCCTCTAAGCACATGGTACAGTGAGCTGCAAGTGGCCACCAGTGTACTACGTCAAGTCTCTGCGGACGCCATGGCCGCTACGGACTGGCTCTACTCCGTTCAATCCACCCTTCCTCTGTGTGAACGTGTCCCTGATGCTGTTCTTCTCCTGGTCACCCACCTGATCCTCAGCAGTGAGGGGGATCTCTGCAGGCTGGCACTGGACACTGCAGCAGGCATCGCTGAGGCTGATCCCGCTCAGGTCCCGTGTCTGCTGCCAGTGTTGATGTTTAAGCTGGGCCGAGTCTCTGACCTGACTCTGTCTCATGCTGTACTCTTCACCTTACCAAAGCTGGGGACACACACGTTCTGTATACCGCAGGTCCTGCATGTTCTCCAGATGCTGGCCAGCTGCTCCAAGTTGAGGGCTGTGGCTCTGCGGCTGCTTACTGCACTATGGCAAAAACAGgatcgTGTGTATCCAGACTTGCAGAAGCTAATGGCGCTGCTGGAGAAATCCTCAGTTGTGGTGGGGAAGGAGGTTCAGTGGGAGCAGATTCTGGCTGGAGCTGCCTGTGTGCGGGACATCTGCAGGGAGAGACCATACCAACATGGAGGAGACATGCTGGCAGCCATCACAGACACGCTGACTCAGTGCACCCGGACGGACCAGGCCACCCCAGCAGCGCTGGCCCTGCAGGGTCTCCACGAGCTGTGCAGAGCTGAGGTGGTTGATTTAGGCTCCACATGGAAGGCGCTTTCTCCCAAGCTGAGCTGTGAGACGAGACCTCTGGTGTTAAAGGCCATAGCTGAGCTTCTCTCTCTGGTGCCCTCGCTGCACGTCAAAACAGAGCAATATGAGAATTTTAAAGGTGAAGTGGTCAGTGTTCTCTGGAGCTACAGTCTGagtcagGACGCAGAGGTAGCTAGCAGTGGCTACAGAGCCCTGTCTGAATTCCCAGAATCCTCTCACTCCATCTTGCACCTTCCTGAGCCAGCCAGACCAGAAGTGAAGCAGCCATTTGATCAAgatgaggaggagaaggagaatgaGAATGAAGAAGACCTCACTGTTCCAGGCTCTTCATACATTAAGCTTGTTGGTCTCACGCCACGGCCAGTTTTACCAGCACTTGAGACCTTCCTAACAGCTCTCATAAGACAAGAGATGAGCCAAATGCCCCGTGGAGTGTACCATTTAGCCCTGAGAGGTGGGAACCTGCGCTCTGACCAAGGCAAAACTGTCGCTGGAGTCCCTGCCTTCATGCTGAAAACGTATGAGAAGAACAAGCAGCCAGGTCTGAAACCTGGTCTTGCAGCTGGTTTGTTGCTCTGTTACGACCTCCCTGTCCAGACTGACAGAGATGGACGACCAATTAACCGCTTTATGGTCAGCAGAGGGCGGAGCTTCCAGCAAACGTTAACCACCCTTATCCATGAGGTGAACATCCAGCCTTCAGAGTGGCACCGCTCTCTTCTCCTGCCTCAGGCATGGCGTGGCTTTATGAGCCGGGCATACCATGCTGttttacagGGGCGTAAGGCCGAGCTGGAGATGCTGCAAAAGCAAGGGAAAGAGAGCCCTGAGGAGCTGCAGTATAAACAACACTGCTCCTGGCTCTGGGTCAGGGACCAGCTGACTGATGTGGTGAAGGCTGCAGCCAAggacAGCCCAGTGGTCCAGGGAAACTGCATCCTTGCTCTAAGTGGCCTTGCTGTTGTCCTGAGCCGCCACGAGAGCAGCCTTCCTGCCCAGAGCGCTGGACAAGTCGAGGTTGGCCCAGAGATCCTACCCACAGCCCACTGGTTGTCTATGGTGATTGACACTCTCCTTAGCATcgtgagcagcagcagcagtcggCCCAAAGGACAAGTTTTTCCCTGGTTTGTTCATCGTTCATACTCAGGCGAGAACACAGCCAGTGCCATTGCTCGCTCCTGTGCTGCACTGGGCCTGGCAATGCTAGTTCCTGTCCTGGTCACCTCACACAGGGACGCAGTGCTCTCTATACGGGACACTTTACAAGCAGGCTTGCCCGGTATGTCCACTGCAGACGACTCTCAAGCTGTGCAGTTCCACAGCGGCTTGGCATTAGGTATGCTGCTGGCCTGGCTTAACGAGGAGAAAGTCAGTGACACTGGTGGGCAGACCATGTGGGAACTGCTGCTGAGCTCTTTGGAGCGTCTGGAATCATGTTGCTTCAACAGCCAGCTGGAATATAAttctgGCTGTGTTCTTGGTGTTGGGCTGCTACTGAGTTCTCTCTGTAGCAGTAGTGATGTTGAGCagcgaatgtgtgtgtctgtttctctggACCGACTTCTTCAGAGCTTGCAGGACAGCGGAAGCATGGGACGCATGCAGCAGGAGGTTCTGGCATACTCTGTGGCATGTGCTGGAGTGTCAGCGTTTAGTTGTGGCATTATTGAAGCCAGTAAAGCTGAGGAGGTGATGAACACTCTGCGATCCATGACTGAGGAGAGCCAGCAGACTCCAGGCTTGGCCCTGGCTCTGGGCCTCATTGTGCATGGGCTCTCGTCCTGCGGCCATGGTAAAGCTGAGGACCTCCACCCTCGCCTGCTGTCTGCGTGGACTAAGATCCTGCTGGCAGAGGGCTGTCCGACTATGCAGAGACTGGCAGCTCTGAATGGAGTGATCGCATTGGTGGGATCTGAGACTGCTTTCCTTCAGCTCAAGAGTGAATCAGAGCAGTCCCCTCAGCAACAGAACCGACTAAATGAGGTCATAAGATCTATTACACAGATCATCTCTTTCTCAGGAACAATAGGTCTGCAGTCTAATGGAGCTTGCCTGGTGGCTCACCTGTATTTGGCTCACATGTCCAGCAGCCACAGTAGAACTGCAGTGCCTCAAGACTTCAGCTATCTCCCAGAAAGGAGTATCCTCAGAGCATCAGTGTTCTACATTGCTGAAGCTGGAAGGAAAGGACCTGAGGCTATTAATCCTGATCTGATAAAAGTAGTACTGGCTCCACTGGCCACAGTGGGCACTAGCTTCCAATATCCACCTGTTAACTGGAGCGCCATCCTCTCACCTCTGATGAGACTCAACTTTGGTGAAGAAGTGCAGCATCACTGCTTAGAGCTGGCTGCCAGTCAGGCACAGACTTCCTCCAGTGCCTCGCTGTTCCTGGGTGTGTGGCTCGCGCCTCCTCTGGTCCACAGCCTCAGTCAACGCACCAGAGCTTTCCTCTATGATTCCCTGTGTTTCTGGATGAAGCACATAGCAGATGATAAGCTGCAGGTGTATGTGGAGAGTTTAGCCGTACAGCAGTTTAATCCAGACCACCGAGCtcagcgtctctctctctgcctctccatcCTGCATGGCCTTGCTAAGGCTATGGCCATGCCCAACCCGGCCCAGAACTGCTGGACTATCCTGTGTTCCACCACTGAGAAGATTTTTCACCTTTTACCTGATCACATACAGGCACATGAGGTGAATCTCTATGAAGGGATCTGTTCCTGTTTGTCAGAAATGAGCGACACAGAGATAGACAGGATTGTCAAAGTCACCGAGGCCAATGTGGAGAAGACCACCTTTATTCTGTCCTACTTGAGTTCAAAAGGCAGAATTCCACTCCTGGGCCTCAATGATATCATCAGTACCATTTTACAGAAGGGGAAACCAGAGCAAATCAGCTGGCTGCTAATGCAGTGCTTCTACCAGTCACGTTTGGCCTCTAACCCTAACACAGGTGTTCCCAAAAGAATGGAATGGCTTCTGGAGTTGATGGGGCACATCAGTAAAGTGCTATATGGAGCACCCACTGTACAATGTGATAATGCCAAAGAGGGCACCAGTTTCCTGATGGATGTTTTTGCAGCTGCAGTGGTGTCATGGGCGGACCACTCCATGCCCCTTCTCATCGGCATCCGAGCCCAGTGGTTTCCATGGCAAAAGTCATCCAAGCACGCAGACTTACCCCATGACCTCTACGTGAACACTGCATCCACTGAGGAGTCTGTTAAACAGTGTGTGCTGGCAATGTCATACAGCCTAAAGCATCTGTTAGCCAAAGAGCCATGGAAGGCCCAGTCACAGAAGTTCATTGACTGGCTCTTCAGCCTAACAGAAGCTCCTGAGGAATCTTTATCACAGATAGCAAGAGCGGCCTTACTAGCACTGAAGTCTACCCCAGAATTCAAGAAAAAGACAGTGTGGACGAGAGCATATGGCTGGTGATCTTCCAATGGAGTACTTTAAAAAAGTACATGTATCACACAAGAAACAGAGGACATGTATGCATGTCATAGATTTTATGAGTACATTCATCACACAGAGTCCTTGTCTACATGTCTGCCAATGATggatttaaaaactgtaaagtaaaaacaaaaattgttcacTTTAGAGCAATGATCAAGATTAAAACCTGAAACAGTAATGTTCCATACAGTAATATAGCAAAGCACTTACAAGTTTCAAATGGACCTGCAAAATATTAGCATGTGTTTGGCAAGACTCTGTTACTCTGAATGTATTACCATAATAGACCAGTGCCAAGCTGACATCATTTAGACTGTTACTATGAAAATAGTATTATGCATTATTCAGTTTTTGAATTTATTCTTATCAATTCCTTTGCATTTCAAGCGCCACAGTGTATGTTACATACTAGGTATGCCATATCCTTTCAGTCTTAATTGCCAAAAGTAAGTAAATGATGATGGATATTTTGGAATCATGTCCTTCTAACTTCAACAAAGTTATTAGTTTGTGCATACATTATTTTGTGCGGTAATCATGTAGAAGTGGCATAAATTTCTTCTTCATTTA

Function

symbol description
focad Orthologous to human FOCAD (focadhesin).

NR:

description
focadhesin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936477.2 True 6135 mRNA 0.51 44 20165711 20223868

Neighbor

gene id symbol gene type direction distance location
LOC113540737 NA coding downstream 21822 20143784 ~ 20143889 (-)
ndufs2 ndufs2,LOC107679282,LOC102781006 coding downstream 22181 20132759 ~ 20143530 (-)
amdhd1 amdhd1,LOC107683519,LOC107738078 coding downstream 207764 19953165 ~ 19957947 (-)
si:ch211-212k18.7 LOC108267884 coding downstream 247283 19911733 ~ 19918428 (-)
LOC113540446 NA coding downstream 254652 19901414 ~ 19911059 (-)
LOC117597004 NA coding upstream 190057 20413925 ~ 20419029 (-)
map4k2 map4k2,LOC108440821,LOC107660717,LOC107679285 coding upstream 201723 20425591 ~ 20444949 (-)
men1 men1,LOC107679288,LOC107731945 coding upstream 223388 20447256 ~ 20455462 (-)
si:dkey-106g10.7 LOC108267586 coding upstream 255392 20479260 ~ 20485658 (-)
ecsit ecsit coding upstream 273812 20497680 ~ 20504408 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding downstream 33674 20127626 ~ 20132037 (-)
G67719 NA non-coding downstream 98652 20066063 ~ 20067059 (-)
G67562 NA non-coding downstream 334961 19830550 ~ 19830750 (-)
G67535 NA non-coding downstream 340792 19769357 ~ 19824919 (-)
G67891 NA non-coding upstream 73454 20297322 ~ 20327561 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding upstream 335510 20559378 ~ 20566758 (-)
G68080 NA non-coding upstream 346531 20570399 ~ 20570930 (-)
G68106 NA non-coding upstream 406298 20630166 ~ 20631710 (-)
G68107 NA non-coding upstream 411664 20635532 ~ 20635793 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 199860 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 221877 19919480 ~ 19943834 (-)
G67587 NA other downstream 276985 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 284071 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 1010490 19050150 ~ 19155221 (-)
znf16l LOC108268318 other upstream 554670 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 1080824 21304692 ~ 21313897 (-)
G68462 NA other upstream 1102178 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 1130751 21354619 ~ 21371010 (-)
G68760 NA other upstream 1710658 21934526 ~ 21935169 (-)

Expression


Co-expression Network