hacd4 (hacd4)


Basic Information

Item Value
gene id hacd4
gene name hacd4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20159312 ~ 20166249 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936479.2
TGATGTGTGTCTTTCAGCTCAAGCACCATGCGTGTCTTTGAGATCAAACCTCATGCGTCTCTTTGAGATCAAGCCTAATGCGTTCTTTAAGATCATGCTCCATGCGTGTCTTTGAGATCAAACCCAGTCAGAAAGATGAGGGAAAGGCAAAAGGGAAAGGCAAAGGGAAGCCCACCGCAGGTCCTGCCCTGCTTACGTCACTGAGGAAACGGGGAAGCCGACGACTGAAGGCGCGATGAACAAGAAAAGCAACAAGCAGCAAAAAAGTGAGCGAGAAGCAGCACAGGAAATGAGGTGCAGCATTGGCTTCGGCTATCTGTTCTCCTACTATTTACTCCAGTTCTGTGGACACACATGGATCTTTTCCAACATGACCGCCAGATTTCTCTCGTTTGGATTGGATGCTTTAGCtggcacattttattttgtgggAGTGATGATGAGCATGTGCCAGCTTTTGTCAGTGCTGGAGCTTTTCCACATTGCAGATGGAATAGAAGAGAGTCAACTCCTTCCTCGGCTTGTCCAGGTGATTGAGAGAAATTTCCTTCTATTCCTAATCATCAGTCAAGAGGAGTTTCAAAGTAaaacagtagtgtgtgtgctgttttatcTGTGGAATATCTTACACCTCATAAGGTACCCATATGAACTGATGTGTCTCATTACCACACCATCATTCAATATGCTGTGGGCGCGCTACACCATCGCCATCCCAGTCTACATACTGTCTGTGATCACAGAAGGAATCAGTATTTTACAGGCGTTGCCATATTACGAGTCACAAGGCACATATTCTGTCCAGCTGAAAACACCTGTCTCTATCTATGTACATTTCCCATACCTGCTAATGGCCTACCTCCCTCTGTTGGCAGCAGGTTCTGGCTTTACAGTACGAATCTTACTCAAAGAAAGGAGTCAGTCTCTTGACAGCTGGAATAAGAAGATGAAAAGGGGCTAAATGAAGAAGAAATTTATGCCACTTCTACATGATTACCGCACAAAATAATGTATGCACAAACTAATAACTTTGTTGAAGTTAGAAGGACATGATTCCAAAATATCCATCATCATTTACTTACTTTTGGCAATTAAGACTGAAAGGATATGGCATACCTAGTATGTAACATACACTGTGGCGCTTGAAATGCAAAGGAATTGATAAGAATAAATTCAAAAACTGAATAATGCATAATACTATTTTCATAGTAACAGTCTAAATGATGTCAGCTTGGCACTGGTCTATTATGGTAATACATTCAGAGTAACAGAGTCTTGCCAAACACATGCTAATATTTTGCAGGTCCATTTGAAACTTGTAAGTGCTTTGCTATATTACTGTATGGAACATTACTGTTTCAGGTTTTAATCTTGATCATTGCTCTAAAgtgaacaatttttgtttttactttacagtttttaaatccATCATTGGCAGACATGTAGACAAGGACTCTGTGTGATGAATGTACTCATAAAATCTATGACATGCATACA
>XM_026936481.2
GGTGAGGACTGCTTCTGTGCGCCAGACGCCCATTTCGAAGCTCTGTCAGGCTTTATTTCAGCTCTTTACTCTCAGCAGTTTTATTTTGAGCAGTTTTCTGAACTCTGTGTGTAAATGGTGCAGCATTGGCTTCGGCTATCTGTTCTCCTACTATTTACTCCAGTTCTGTGGACACACATGGATCTTTTCCAACATGACCGCCAGATTTCTCTCGTTTGGATTGGATGCTTTAGCtggcacattttattttgtgggAGTGATGATGAGCATGTGCCAGCTTTTGTCAGTGCTGGAGCTTTTCCACATTGCAGATGGAATAGAAGAGAGTCAACTCCTTCCTCGGCTTGTCCAGGTGATTGAGAGAAATTTCCTTCTATTCCTAATCATCAGTCAAGAGGAGTTTCAAAGTAaaacagtagtgtgtgtgctgttttatcTGTGGAATATCTTACACCTCATAAGGTACCCATATGAACTGATGTGTCTCATTACCACACCATCATTCAATATGCTGTGGGCGCGCTACACCATCGCCATCCCAGTCTACATACTGTCTGTGATCACAGAAGGAATCAGTATTTTACAGGCGTTGCCATATTACGAGTCACAAGGCACATATTCTGTCCAGCTGAAAACACCTGTCTCTATCTATGTACATTTCCCATACCTGCTAATGGCCTACCTCCCTCTGTTGGCAGCAGGTTCTGGCTTTACAGTACGAATCTTACTCAAAGAAAGGAGTCAGTCTCTTGACAGCTGGAATAAGAAGATGAAAAGGGGCTAAATGAAGAAGAAATTTATGCCACTTCTACATGATTACCGCACAAAATAATGTATGCACAAACTAATAACTTTGTTGAAGTTAGAAGGACATGATTCCAAAATATCCATCATCATTTACTTACTTTTGGCAATTAAGACTGAAAGGATATGGCATACCTAGTATGTAACATACACTGTGGCGCTTGAAATGCAAAGGAATTGATAAGAATAAATTCAAAAACTGAATAATGCATAATACTATTTTCATAGTAACAGTCTAAATGATGTCAGCTTGGCACTGGTCTATTATGGTAATACATTCAGAGTAACAGAGTCTTGCCAAACACATGCTAATATTTTGCAGGTCCATTTGAAACTTGTAAGTGCTTTGCTATATTACTGTATGGAACATTACTGTTTCAGGTTTTAATCTTGATCATTGCTCTAAAgtgaacaatttttgtttttactttacagtttttaaatccATCATTGGCAGACATGTAGACAAGGACTCTGTGTGATGAATGTACTCATAAAATCTATGACATGCATACA
>XM_034303347.1
TGAGGAATTtggctgtgttttgttttggtgtcTGTACCGCCAGCAGCACTGGATATGAGCTGTTATAGCTTACAGCTAAAATACACTTAATGTCATAGTGCTGTTCGTGTCAGGAAGCGCTGTGTtgtggagggggaaaaaaagcgaAAACACGGTGCAGCATTGGCTTCGGCTATCTGTTCTCCTACTATTTACTCCAGTTCTGTGGACACACATGGATCTTTTCCAACATGACCGCCAGATTTCTCTCGTTTGGATTGGATGCTTTAGCtggcacattttattttgtgggAGTGATGATGAGCATGTGCCAGCTTTTGTCAGTGCTGGAGCTTTTCCACATTGCAGATGGAATAGAAGAGAGTCAACTCCTTCCTCGGCTTGTCCAGGTGATTGAGAGAAATTTCCTTCTATTCCTAATCATCAGTCAAGAGGAGTTTCAAAGTAaaacagtagtgtgtgtgctgttttatcTGTGGAATATCTTACACCTCATAAGGTACCCATATGAACTGATGTGTCTCATTACCACACCATCATTCAATATGCTGTGGGCGCGCTACACCATCGCCATCCCAGTCTACATACTGTCTGTGATCACAGAAGGAATCAGTATTTTACAGGCGTTGCCATATTACGAGTCACAAGGCACATATTCTGTCCAGCTGAAAACACCTGTCTCTATCTATGTACATTTCCCATACCTGCTAATGGCCTACCTCCCTCTGTTGGCAGCAGGTTCTGGCTTTACAGTACGAATCTTACTCAAAGAAAGGAGTCAGTCTCTTGACAGCTGGAATAAGAAGATGAAAAGGGGCTAAATGAAGAAGAAATTTATGCCACTTCTACATGATTACCGCACAAAATAATGTATGCACAAACTAATAACTTTGTTGAAGTTAGAAGGACATGATTCCAAAATATCCATCATCATTTACTTACTTTTGGCAATTAAGACTGAAAGGATATGGCATACCTAGTATGTAACATACACTGTGGCGCTTGAAATGCAAAGGAATTGATAAGAATAAATTCAAAAACTGAATAATGCATAATACTATTTTCATAGTAACAGTCTAAATGATGTCAGCTTGGCACTGGTCTATTATGGTAATACATTCAGAGTAACAGAGTCTTGCCAAACACATGCTAATATTTTGCAGGTCCATTTGAAACTTGTAAGTGCTTTGCTATATTACTGTATGGAACATTACTGTTTCAGGTTTTAATCTTGATCATTGCTCTAAAgtgaacaatttttgtttttactttacagtttttaaatccATCATTGGCAGACATGTAGACAAGGACTCTGTGTGATGAATGTACTCATAAAATCTATGACATGCATACA
>XM_034303348.1
ATAAAGCTTGATGTGTGTCTTTCAGCTCAAGCACCATGCGTGTCTTTGAGATCAAACCTCATGCGTCTCTTTGAGATCAAGCCTAATGCGTTCTTTAAGATCATGCTCCATGCGTGTCTTTGAGATCAAACCCAGTCAGAAAGATGAGGGAAAGGCAAAAGGGAAAGGCAAAGGGAAGCCCACCGCAGGTCCTGCCCTGCTTACGTCACTGAGGAAACGGGGAAGCCGACGACTGAAGGCGCGATGAACAAGAAAAGCAACAAGCAGCAAAAAAGTGAGCGAGAAGCAGCACAGGAAATGAGGTGCAGCATTGGCTTCGGCTATCTGTTCTCCTACTATTTACTCCAGTTCTGTGGACACACATGGATCTTTTCCAACATGACCGCCAGATTTCTCTCGTTTGGATTGGATGCTTTAGCtggcacattttattttgtgggAGTGATGATGAGCATGTGCCAGCTTTTGTCAGTGCTGGAGCTTTTCCACATTGCAGATGGAATAGAAGAGAGTCAACTCCTTCCTCGGCTTGTCCAGGTGATTGAGAGAAATTTCCTTCTATTCCTAATCATCAGTCAAGAGGAGTTTCAAAGTAaaacagtagtgtgtgtgctgttttatcTGTGGAATATCTTACACCTCATAAGGAATCAGTATTTTACAGGCGTTGCCATATTACGAGTCACAAGGCACATATTCTGTCCAGCTGAAAACACCTGTCTCTATCTATGTACATTTCCCATACCTGCTAATGGCCTACCTCCCTCTGTTGGCAGCAGGTTCTGGCTTTACAGTACGAATCTTACTCAAAGAAAGGAGTCAGTCTCTTGACAGCTGGAATAAGAAGATGAAAAGGGGCTAAATGAAGAAGAAATTTATGCCACTTCTACATGATTACCGCACAAAATAATGTATGCACAAACTAATAACTTTGTTGAAGTTAGAAGGACATGATTCCAAAATATCCATCATCATTTACTTACTTTTGGCAATTAAGACTGAAAGGATATGGCATACCTAGTATGTAACATACACTGTGGCGCTTGAAATGCAAAGGAATTGATAAGAATAAATTCAAAAACTGAATAATGCATAATACTATTTTCATAGTAACAGTCTAAATGATGTCAGCTTGGCACTGGTCTATTATGGTAATACATTCAGAGTAACAGAGTCTTGCCAAACACATGCTAATATTTTGCAGGTCCATTTGAAACTTGTAAGTGCTTTGCTATATTACTGTATGGAACATTACTGTTTCAGGTTTTAATCTTGATCATTGCTCTAAAgtgaacaatttttgtttttactttacagtttttaaatccATCATTGGCAGACATGTAGACAAGGACTCTGTGTGATGAATGTACTCATAAAATCTATGACATGCATACA

Function

symbol description
hacd4 Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human HACD4 (3-hydroxyacyl-CoA dehydratase 4).

NR:

description
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X3

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936479.2 True 1497 mRNA 0.41 7 20159320 20166249
XM_026936481.2 False 1320 mRNA 0.39 7 20159613 20166249
XM_034303347.1 False 1357 mRNA 0.39 7 20159743 20166249
XM_034303348.1 False 1398 mRNA 0.40 6 20159312 20166249

Neighbor

gene id symbol gene type direction distance location
kirrel1a kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226 coding upstream 29848 20102481 ~ 20129464 (+)
trnar-ucu_2 NA coding upstream 58214 20101025 ~ 20101098 (+)
LOC113539830 NA coding upstream 60235 20091887 ~ 20099077 (+)
LOC113540456 LOC108268101 coding upstream 72007 20081770 ~ 20087305 (+)
LOC113540455 NA coding upstream 84277 20069061 ~ 20075035 (+)
mllt3 mllt3,LOC107683508 coding downstream 55639 20221888 ~ 20271231 (+)
c4h4orf54 LOC108268294 coding downstream 123548 20289797 ~ 20297146 (+)
trmt10a trmt10a,LOC107683564,LOC106608639 coding downstream 140881 20307130 ~ 20314066 (+)
nectin4a LOC108267696 coding downstream 152188 20318437 ~ 20332200 (+)
coro1b LOC108267697,LOC108440123,LOC107679286,LOC107597893,LOC107710519,LOC107683505,LOC107558435 coding downstream 167429 20333678 ~ 20345681 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 193424 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 242143 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 244909 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 270587 19888178 ~ 19888725 (+)
G67579 NA non-coding upstream 277573 19879978 ~ 19881739 (+)
G67827 NA non-coding downstream 83809 20250058 ~ 20275675 (+)
G67958 LOC108267586 non-coding downstream 314351 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 469099 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 526014 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 698629 20864878 ~ 20895955 (+)
fcer1g LOC100305060 other upstream 4535 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 92092 19990684 ~ 20067220 (+)
G66864 NA other upstream 1300660 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1950748 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2015681 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 854009 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1147969 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1462827 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1586167 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2483561 22649810 ~ 22652447 (+)

Expression


Co-expression Network