miga1 (miga1)


Basic Information

Item Value
gene id miga1
gene name miga1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29172756 ~ 29184256 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936488.2
CCATATTAAGTGTCGAGGGCACTACTGAGCACTACTATAAACCCGtagcctgtgtagtgcacttgtgtAGGGTTTAGGGAGTTATTTGGGATTTTGCCATCTCCTGCTGTCTTTCCCGAGTGGACAGATAGCTCAAAGACGACTGAAGCACTAAATGCCGAGCCGGAGCCGAGGGATGTTGACGATGGTGTGAATATGGCACCATGGCAGAGGACGTGCTCAGAGACTCCTCACTGTCCTTAAAGACGGCCGTCCTGCGTGCGGCGGACGTTCCTCTGTCCGTCTTTTCCTCCCTTCCACAGgTGAGCCTGAGCTCTGGCACTAAGAAGCTCGTGGCCGTTGCTGCCTTCGGCGCCGTCTCCGTCCTCTTCCTCGCCCGTCGCTTCAGGAGGCGGAAGGGGAAGAAAAAAGTGGTGCAGGAGCAGAAGAGGTCTGACTTCCTCTCCACGCTTCCACCACTGAAagATGCTGCTTGCACCCGTCCGAACCTCAGTTTGTGTCTGAACTCGAAGAGCGGCTTTTCCCGTCACACTGTGTCTAACGGTGGCTTACACAGCAAACTCTCCAGCTCCCTGCAGAGTCTGAACTCGGTGAAGAGTGTGAACTCTTGCAGCGAGGGCACCAACGGATCGGCTTGCTGGGACGGAACGGACGATGGCGATCTGCGTAACGTCGTCACGACTCCAGAAAACCTCTACCTGATGGGTATGGAGTTGTTTGAGGAGGCGCTACGACGCTGGGAAGAGGCGCTAAGTTTCCGCAGCCGGCTAGCTGACGACGAGGCAGAGTGCTGTTCTGTAAAACTGGGAGCCGGAGACGCCATCGCCGAGGAGACCGTAGAGGACATCATCAGCGGCGAGTTCATCCGTAAGCTGGAGTCTCTGCTGCAGAGGGCATATCGGCTCCAGGAGGAGTTCGAAGGAGCGGTGGGATTCACGGATCCGTCTTCACACCACAGCGAGAAACACCCCGAAGGTTCCGCGAGAGACGATCTGGATGACTCGTGCTGGAGAGACACCTTGAGCATCGGCTCCACTGACTCGTTCGTGTCTGCTGCAGAGCTGTCTGAGCATAAGAGTGCCTTGGGTCTCAGCTCTCTCTGTCGTTACCCGTTCTACGAGGAGGCTCTGCAGATGGCCGAGGACGGGAAAGTATCCTGTCGAGTTCTCCGAACTGAGATGCTTGAATGCCTTGGAGACACAGATTTCCTCGCCAAGCTGCACTGCATCCGCCAGGCTTGTCAGGTCATTCTCCAAGAAATGTCGACTCAGAAGTTTCTGGCTGACACGGGCAAAAAGATCTTGTCCTCAATAATCGTGAAAGCCAGAAAGAACCCTAAGAGATTTGAGGAAGTTTACGAGGAGATGATCGGCTTCCTGGAGCAGAGGGAGCACTGGGAGAAAACCGAAGCCGAGCTCTCTACGAGAGGAGTAAGGCATTTAAACTTCTACGACATCGTCCTCGACTTTATCCTCATGGACTCTTTTGAGGATCTGGAGAATCCGCCCATGTCCATTATGAATGTCGTTAACAACCGCTGGCTTAACGATGCCTTCAAAGAAACCGCGGTGGCATCAAGCTGCTGGTCTGTTCTAAAGCAGAAGCGACAACATGTGAAGGATCAAGACGGCTTTATCGCTCACTTCTACGCGGTGTGTGAGCACATCAGCCCCGAGTTAGCGTGGGGTTTCCTGGGGCCTAAAAGCTCCCTGCATGACTTCTGCTGCTTCTTCAAGGAGCAGGTGCTGCTCTTCCTGAAGGACATCTTCGATCTGGACAAGGTGCGTTACTCCAGCGTGGACACTCTGGCCGAAGACGTACTGCACCTGTTGCACTACCGAGCCGAGTTGCTTCTGAGCTACTCAGGCTCTGACTGCACCCCCCACGCTAACGGCTGCGTCGGTACGATGTCCCGGCTGGTGCCCGGCGCCCTGCCCGAGACCCGGGTGCAGTGAGAAACTCTCCACCGATTCGGAATTTCATCCATCCTTAAACAGGAAGAACAACGTCTTTTACAATCAGTGCTTTGTTTTTGACTTTTCTATATTGATAAAGGTCAAAGTGTAGCATGTAGTCGAGTGAAACTATTATAACGTGCTGCTCTATTTGGAGTGATCACACTTGGTATTTGTATGAAGTATTTATTTcatatctgtttttattcttgAAATGAATGATCGACTGATCTCAAAATGTGAATGAGTGCTGGGAATTGGATCGAATGTCATTCAAAAAGGCCCTACCTCTGACTAGAATTGTCCAAAATTGTCCAAAATTAATACCCACTTCTTACTTTTTGATAGATGAACCAGAAATTTGGGCTTTtaagagtcttttttttttttttttttttctttttcaccaaGAGTGCATACTGTATAGCAACGGAGGAcggattattttaaatatcacaTACTGGTCATTTTGTTGTGACAATAATAAGGCTTACTGTTAGCACCTGTATTGTGTTCTCAAGTTTGAAGTAAATGTTggatgtgtttctttttttattattcaaaattttaacaaattataaGACAGATGGTTCTTTAGTCATGACTTGGCTGAGGGACTGTCATTGTGTCTAAAAGGGTGGAGCTTAAGTTAAATCAGCCATTTTCAAAATtgatcatataatataatatattataagcTAGTTAACGGTACGtgtcactagctagctagttaccaCTAGCTAACTAATAATGATTGCGTCGATACAATAAATCAGGAGTCGAGTTCACTGATGTTTGTTAAATTACCGTGGTGAAGTTATACACTCTGATTtgtgattaattaatgaaatttaaCATAAGTTCCACCCTTGTTAATACTTTAATGCCAGGATGTGAGCTAAACTGCCTGTTCAGTTGTtaagctaaatgctaaatatttattCTAAAAGAACTTGGATGTATTTTGTCTAATTACcacattatttttctgtaaaaatgtccAAAGATTGTGCTGCTACAATGTCAAATTTATGAGCTAATAAAAGGCCAATGGAAAGTG
>XM_026936489.2
CCATATTAAGTGTCGAGGGCACTACTGAGCACTACTATAAACCCGtagcctgtgtagtgcacttgtgtAGGGTTTAGGGAGTTATTTGGGATTTTGCCATCTCCTGCTGTCTTTCCCGAGTGGACAGATAGCTCAAAGACGACTGAAGCACTAAATGCCGAGCCGGAGCCGAGGGATGTTGACGATGGTGTGAATATGGCACCATGGCAGAGGACGTGCTCAGAGACTCCTCACTGTCCTTAAAGACGGCCGTCCTGCGTGCGGCGGACGTTCCTCTGTCCGTCTTTTCCTCCCTTCCACAGGTGAGCTCTGGCACTAAGAAGCTCGTGGCCGTTGCTGCCTTCGGCGCCGTCTCCGTCCTCTTCCTCGCCCGTCGCTTCAGGAGGCGGAAGGGGAAGAAAAAAGTGGTGCAGGAGCAGAAGAGGTCTGACTTCCTCTCCACGCTTCCACCACTGAAagATGCTGCTTGCACCCGTCCGAACCTCAGTTTGTGTCTGAACTCGAAGAGCGGCTTTTCCCGTCACACTGTGTCTAACGGTGGCTTACACAGCAAACTCTCCAGCTCCCTGCAGAGTCTGAACTCGGTGAAGAGTGTGAACTCTTGCAGCGAGGGCACCAACGGATCGGCTTGCTGGGACGGAACGGACGATGGCGATCTGCGTAACGTCGTCACGACTCCAGAAAACCTCTACCTGATGGGTATGGAGTTGTTTGAGGAGGCGCTACGACGCTGGGAAGAGGCGCTAAGTTTCCGCAGCCGGCTAGCTGACGACGAGGCAGAGTGCTGTTCTGTAAAACTGGGAGCCGGAGACGCCATCGCCGAGGAGACCGTAGAGGACATCATCAGCGGCGAGTTCATCCGTAAGCTGGAGTCTCTGCTGCAGAGGGCATATCGGCTCCAGGAGGAGTTCGAAGGAGCGGTGGGATTCACGGATCCGTCTTCACACCACAGCGAGAAACACCCCGAAGGTTCCGCGAGAGACGATCTGGATGACTCGTGCTGGAGAGACACCTTGAGCATCGGCTCCACTGACTCGTTCGTGTCTGCTGCAGAGCTGTCTGAGCATAAGAGTGCCTTGGGTCTCAGCTCTCTCTGTCGTTACCCGTTCTACGAGGAGGCTCTGCAGATGGCCGAGGACGGGAAAGTATCCTGTCGAGTTCTCCGAACTGAGATGCTTGAATGCCTTGGAGACACAGATTTCCTCGCCAAGCTGCACTGCATCCGCCAGGCTTGTCAGGTCATTCTCCAAGAAATGTCGACTCAGAAGTTTCTGGCTGACACGGGCAAAAAGATCTTGTCCTCAATAATCGTGAAAGCCAGAAAGAACCCTAAGAGATTTGAGGAAGTTTACGAGGAGATGATCGGCTTCCTGGAGCAGAGGGAGCACTGGGAGAAAACCGAAGCCGAGCTCTCTACGAGAGGAGTAAGGCATTTAAACTTCTACGACATCGTCCTCGACTTTATCCTCATGGACTCTTTTGAGGATCTGGAGAATCCGCCCATGTCCATTATGAATGTCGTTAACAACCGCTGGCTTAACGATGCCTTCAAAGAAACCGCGGTGGCATCAAGCTGCTGGTCTGTTCTAAAGCAGAAGCGACAACATGTGAAGGATCAAGACGGCTTTATCGCTCACTTCTACGCGGTGTGTGAGCACATCAGCCCCGAGTTAGCGTGGGGTTTCCTGGGGCCTAAAAGCTCCCTGCATGACTTCTGCTGCTTCTTCAAGGAGCAGGTGCTGCTCTTCCTGAAGGACATCTTCGATCTGGACAAGGTGCGTTACTCCAGCGTGGACACTCTGGCCGAAGACGTACTGCACCTGTTGCACTACCGAGCCGAGTTGCTTCTGAGCTACTCAGGCTCTGACTGCACCCCCCACGCTAACGGCTGCGTCGGTACGATGTCCCGGCTGGTGCCCGGCGCCCTGCCCGAGACCCGGGTGCAGTGAGAAACTCTCCACCGATTCGGAATTTCATCCATCCTTAAACAGGAAGAACAACGTCTTTTACAATCAGTGCTTTGTTTTTGACTTTTCTATATTGATAAAGGTCAAAGTGTAGCATGTAGTCGAGTGAAACTATTATAACGTGCTGCTCTATTTGGAGTGATCACACTTGGTATTTGTATGAAGTATTTATTTcatatctgtttttattcttgAAATGAATGATCGACTGATCTCAAAATGTGAATGAGTGCTGGGAATTGGATCGAATGTCATTCAAAAAGGCCCTACCTCTGACTAGAATTGTCCAAAATTGTCCAAAATTAATACCCACTTCTTACTTTTTGATAGATGAACCAGAAATTTGGGCTTTtaagagtcttttttttttttttttttttctttttcaccaaGAGTGCATACTGTATAGCAACGGAGGAcggattattttaaatatcacaTACTGGTCATTTTGTTGTGACAATAATAAGGCTTACTGTTAGCACCTGTATTGTGTTCTCAAGTTTGAAGTAAATGTTggatgtgtttctttttttattattcaaaattttaacaaattataaGACAGATGGTTCTTTAGTCATGACTTGGCTGAGGGACTGTCATTGTGTCTAAAAGGGTGGAGCTTAAGTTAAATCAGCCATTTTCAAAATtgatcatataatataatatattataagcTAGTTAACGGTACGtgtcactagctagctagttaccaCTAGCTAACTAATAATGATTGCGTCGATACAATAAATCAGGAGTCGAGTTCACTGATGTTTGTTAAATTACCGTGGTGAAGTTATACACTCTGATTtgtgattaattaatgaaatttaaCATAAGTTCCACCCTTGTTAATACTTTAATGCCAGGATGTGAGCTAAACTGCCTGTTCAGTTGTtaagctaaatgctaaatatttattCTAAAAGAACTTGGATGTATTTTGTCTAATTACcacattatttttctgtaaaaatgtccAAAGATTGTGCTGCTACAATGTCAAATTTATGAGCTAATAAAAGGCCAATGGAAAGTG

Function

symbol description
miga1 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in mitochondrial fusion. Predicted to be integral component of plasma membrane. Orthologous to human MIGA1 (mitoguardin 1).

NR:

description
mitoguardin 1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936488.2 True 3015 mRNA 0.47 16 29172756 29184256
XM_026936489.2 False 3009 mRNA 0.47 16 29172756 29184256

Neighbor

gene id symbol gene type direction distance location
ak5 ak5,LOC107703241,LOC107681791,LOC107599844 coding upstream 44192 29080184 ~ 29128564 (+)
st6galnac5a st6galnac3,st6galnac5,st6galnac5a,LOC107751866,LOC107708707,LOC107681827,LOC107599846,LOC107703199,LOC107558179 coding upstream 129761 28940674 ~ 29042995 (+)
cope cope,LOC107709006,LOC107681743 coding upstream 242224 28923611 ~ 28930532 (+)
LOC117597035 NA coding upstream 266360 28901530 ~ 28906396 (+)
LOC117597120 NA coding upstream 285200 28885151 ~ 28887556 (+)
LOC113540202 LOC108267626,LOC108437507 coding downstream 12333 29196589 ~ 29205743 (+)
LOC113540294 LOC108267627,LOC108267624 coding downstream 24078 29208334 ~ 29218020 (+)
LOC113539851 LOC108267627 coding downstream 35270 29219526 ~ 29225911 (+)
pls1 pls1,LOC108268020,LOC108437523,LOC107681752,LOC107709028 coding downstream 154867 29339123 ~ 29356789 (+)
ephb3a ephb3a,LOC108267069,LOC108437521,LOC107681809,LOC107599837,LOC107708817,LOC107656865,LOC105889460,LOC107722542 coding downstream 205777 29390033 ~ 29423768 (+)
G72917 NA non-coding upstream 118538 29053486 ~ 29054218 (+)
G72913 NA non-coding upstream 238447 28933983 ~ 28934309 (+)
G72910 NA non-coding upstream 241358 28931076 ~ 28931398 (+)
G72892 NA non-coding upstream 254358 28917742 ~ 28918398 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding upstream 257498 28914629 ~ 28915258 (+)
G73000 LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107565821,LOC107722302 non-coding downstream 114879 29299135 ~ 29301133 (+)
G73072 NA non-coding downstream 299006 29483262 ~ 29524242 (+)
G73069 eif4a2,LOC107708841,LOC107103884 non-coding downstream 334852 29519108 ~ 29521022 (+)
G73088 NA non-coding downstream 340042 29524298 ~ 29524836 (+)
G73089 NA non-coding downstream 341946 29526202 ~ 29526918 (+)
G72873 NA other upstream 260652 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 375597 28792847 ~ 28797159 (+)
gng5 NA other upstream 411305 28758545 ~ 28761451 (+)
insig1 insig1 other upstream 789334 28302851 ~ 28383422 (+)
asip2b NA other downstream 435737 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 489258 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 1270501 30454757 ~ 30478293 (+)
G73944 NA other downstream 1561875 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1877474 31061730 ~ 31097929 (+)

Expression


Co-expression Network