gipc2 (gipc2,LOC108430720)


Basic Information

Item Value
gene id gipc2
gene name gipc2,LOC108430720
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28842922 ~ 28861443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936503.2
GAGTTTCTGTGTGACGTAGGCGCGCCTCTGTGCGTGgctgtgtgtgcgcatgcgcactcGGCGCTGTTGAAGCCTTGGCGTTGGTCGCGCGCTGCCGGTCAGAGTTTATGGAAAAACGAGGAAACGcgctgtttgtttatttgtcgCTTTAGTGGTGAGATTTTCACTTCCTGTGCGAGGAAACGTTTctgttttcaaacaaaaaaaaagtgactctgAGCGCTACAGGTTGTTTACTCTCATGCTGTAGAGAGGCTCGCGCTTTGCGTACCTGTCGCGCGGATTTGTTTGTCCCCCTCCACCCTCCGGTTCCCCGGTGAGGAGCACGCGATGCCGTTGGGCCTgcggaagaagaagaagtcgcGAGAGAGCTCGAGCCTGGTGGAGAATGAGGAGGtcagtggaggaggtggaggtggaggaggaagcGGCGGAGGGCACGCGGGAAAGAGCGCGGCGATGAACGgaggcggcggcggcggcggagGGCTCGCGCCACCACCCGCAAACCTGCGCCCCAAACTCGTGTTCCACACGCAGCTCGCGCACGGCAGCCCCACCGGCCGCATCGAGGGCTTCAGCAACGTCAAAGAGCTGTACGCCAAAATCGCCGAGGCGTTCAATCTCAGCTCGTCTGAGATCCTGTTCtgcaccctgaacacacacaaaatcgaCATGGAGAAGCTGCTCGGAGGCCAGATAGGTCTAGAGGACTTCATCTTCGCTCATGTGAAGGGCATCAAAAAGGAGGTGGAGGTGTTCAAGGCCGAGGATGCGCTGGGCCTCACCATCACAGACAACGGCGCTGGATACGCCTTCATCAAGcgcaTAAAGGAGGGCAGCGTGGCAGACGGCGTGAAGGTGATCTGTGTAGGCGACCACATCGAGTGTATTAACGGGAAGAACATCGTGGGGACGCGGCACTATGAAGTGGCCCGCATGCTCAAGGATCTGCCGAAAGATCAGTCCTTTAAGCTCAAGCTGGTCGAACCTATGAAGGCTTTTGagaTGCTCGAGCCGAGATCAAAAGGAGCCAAGCCTCAGGGGGAGAACCGGATCGGCACGGGCCGAGAGACTCTGAGACTCCGCTCCAAAGGCCCAGCCACTGTCGAGGAAATGCCCACCGAGTTTGAAGAGAAGGCGGTGAAAAAAGTGGACGACCTCCTTGAGAGCTACATGGGTATTCGAGACACGGAATTAGCGGCCACGATGGTGGAGGTCGGACGGGACAAGGTGAACCCGGACGAGTTTGCCATGGCTCTGGACGAGGCTCTGGGAGACTTTGCCTTCCCAGACGAGTTCGTGTTTGACGTCTGGGGAGCTATAGGTGACGCCAAGCAGGGACGCTTTTAACTCCAATACAACACGTATACACACTCCGTGACAACTCAGCAATATGACTTGGGATAATGTTTAGTTAAAACAGCATGTGGTAGGTAAAAGGAAATGCTGTTTGATATCACTGTGATCTtagaacgaacacacacacacacacacacacactacagctcaATCAATCAAAGTGTACTTATTCCACTGGATAGCATTAAATACAACTTTTGTATCAGGTACATTTTAAATATCGATATTGTCTCCTGTTTGATTGGACACTAACGTCATTGTTTATTGTGTCACTGTGAGGACGCACACTTTTCTGTAGGGCAGAGACAAGAATCGCAGCATTTGGAACACATCCGTCCACATATCTCGGCAATCTTAAGGATCACTAATAGAATTTTATTAGAATAAAATTAACTTGCGCTTTAATTTGCTAATGTTTCACGTCGTGACTGTAACTTGTAAGGCTGATTTGTTACCGTTGTGTAACATCATTCACAACTCGCTTTACATCACTGTTGTTTTGCGTCATCGAAATTATTTCACAAGTTCATCACCGCGGCCTACAACAGGAAATGAGCTCAGTAGAATATAATTCTATATGTGACCATAGTGATAGGCCTGATTTTTTCCTCCCCATCAGTAGGTATCTGATGTTCACTAGTAAGCTCACTAATACAAGGTGAATTATTGTATAACTGGCTGATCACATTTAATCTGCACTTGATCCATGGACTCGTCCCTCAGCAAAATCAGGACATGTGCCATAGTCACATGATTTGCCATGAATTAGTGATTAAGGGCActttaaaatcactttttttttttataactgtcTAAACTGTAGTGCTTattaggcatgtgctgatacTGATACAAATCGGTATATTTAGCTTACACTATATTATGACAGACCACTTGTTTTGTATTCTCAAAAAGGCTACCTAAGTAGGCAGCATTTGTGCTCCTGAGACGGAACGTcattatttttgtctcatttgtacTTCCTCTAATTCTGTTTACTCAGAGTTGCAAAAACATTACACAACCGTGTCGCAATATGCACGTGTTGTGATAGATAAATTTATGTATCAGCACACGCctagtcatttttaaattgtgttttgtaTATAACTAACACTGaaaattttgttttgtgaaagaaTTTCAGATTCTGCATTTCTTCAGTTTGGCCCAATGAAGGATTACACGAATCCGTCTTGATCatgttataatatatttatcACTGCGCATGGAAAGATGTTATAGTAACTTTAGACAAGGGTGATTTTTGGAAACTAACctaacctctttttttttttttgtacagaatATGAATATTTAGTA

Function

symbol description
gipc2 Acts upstream of or within sprouting angiogenesis. Is expressed in several structures, including cardiovascular system; ectoderm; nervous system; segmental plate; and swim bladder bud. Orthologous to human GIPC2 (GIPC PDZ domain containing family member 2).

NR:

description
PREDICTED: PDZ domain-containing protein GIPC2

GO: NA

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936503.2 True 2685 mRNA 0.47 6 28842922 28861443

Neighbor

gene id symbol gene type direction distance location
LOC113540190 NA coding downstream 14958 28798977 ~ 28827964 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding downstream 57167 28763304 ~ 28785755 (-)
arl14 LOC108267661 coding downstream 79645 28762094 ~ 28763277 (-)
LOC113540626 rec8 coding downstream 86278 28745630 ~ 28756644 (-)
si:ch73-182a11.2 LOC108268045 coding downstream 106169 28722850 ~ 28736753 (-)
LOC117597036 NA coding upstream 16130 28877573 ~ 28880202 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding upstream 50170 28911613 ~ 28918152 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 193569 29055012 ~ 29077436 (-)
zzz3 zzz3,LOC104950552 coding upstream 269743 29131186 ~ 29147492 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding upstream 438863 29300306 ~ 29322917 (-)
G72893 NA non-coding downstream 9202 28832384 ~ 28833720 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding downstream 58782 28782923 ~ 28784140 (-)
LOC117597077 NA non-coding downstream 124967 28713034 ~ 28717955 (-)
G72796 NA non-coding downstream 174279 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 371151 28397661 ~ 28471771 (-)
LOC117597038 NA non-coding upstream 30573 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 79219 28940662 ~ 29029191 (-)
G73243 NA non-coding upstream 125029 28986472 ~ 28988383 (-)
G73264 NA non-coding upstream 182317 29043760 ~ 29043970 (-)
G73248 NA non-coding upstream 192154 29053597 ~ 29054227 (-)
LOC117597168 NA other downstream 51093 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 190497 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 606117 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 606655 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 617319 28197991 ~ 28225603 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 12135 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 287195 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 702778 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 863145 29724588 ~ 29730857 (-)
G73619 blvra other upstream 1158063 30019506 ~ 30022525 (-)

Expression


Co-expression Network