Gene
RNA
| Item | Value |
|---|---|
| gene id | st6galnac5a |
| gene name | st6galnac3,st6galnac5,st6galnac5a,LOC107751866,LOC107708707,LOC107681827,LOC107599846,LOC107703199,LOC107558179 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 28940674 ~ 29042995 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| st6galnac3 | Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; heart; and intestine. Orthologous to human ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3). |
| st6galnac5a | Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; intestine; and testis. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5). |
| st6galnac5 | Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide biosynthetic process. Predicted to be located in Golgi membrane. |
| description |
|---|
| PREDICTED: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like |
| id | name | namespace |
|---|---|---|
| GO:0006486 | protein glycosylation | biological_process |
| GO:0097503 | sialylation | biological_process |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0001665 | alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity | molecular_function |
| GO:0008373 | sialyltransferase activity | molecular_function |
| id | description |
|---|---|
| K03373 | SIAT7C, ST6GalNAc III; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C) |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026936504.2 | False | 2046 | mRNA | 0.47 | 5 | 29005620 | 29042995 |
| XM_026936505.2 | False | 2009 | mRNA | 0.47 | 6 | 28954584 | 29042995 |
| XM_034303336.1 | False | 3173 | mRNA | 0.49 | 9 | 28940674 | 29042995 |
| XM_034303337.1 | False | 2970 | mRNA | 0.48 | 9 | 28945159 | 29042995 |
| XM_034303338.1 | False | 2702 | mRNA | 0.50 | 8 | 28940674 | 29042995 |
| XM_034303339.1 | False | 2699 | mRNA | 0.50 | 8 | 28940674 | 29042995 |
| XM_034303340.1 | False | 5334 | mRNA | 0.46 | 8 | 28940674 | 29040821 |
| XM_034303341.1 | False | 2747 | mRNA | 0.47 | 8 | 28940674 | 29042995 |
| XM_034303342.1 | False | 1796 | mRNA | 0.54 | 7 | 28940674 | 29036775 |
| XM_034303343.1 | True | 6152 | mRNA | 0.43 | 6 | 28940674 | 28986386 |
| XM_034303344.1 | False | 1951 | mRNA | 0.47 | 6 | 28963419 | 29042995 |
| XM_034303345.1 | False | 1754 | mRNA | 0.46 | 5 | 29005367 | 29042995 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cope | cope,LOC107709006,LOC107681743 | coding | upstream | 10142 | 28923611 ~ 28930532 (+) |
| LOC117597035 | NA | coding | upstream | 34278 | 28901530 ~ 28906396 (+) |
| LOC117597120 | NA | coding | upstream | 53118 | 28885151 ~ 28887556 (+) |
| LOC117597034 | NA | coding | upstream | 72496 | 28863057 ~ 28868178 (+) |
| txndc12 | txndc12,LOC107690994,LOC107566463,LOC107708672,LOC107681819 | coding | upstream | 97912 | 28832373 ~ 28842762 (+) |
| ak5 | ak5,LOC107703241,LOC107681791,LOC107599844 | coding | downstream | 37189 | 29080184 ~ 29128564 (+) |
| miga1 | miga1 | coding | downstream | 129761 | 29172756 ~ 29184256 (+) |
| LOC113540202 | LOC108267626,LOC108437507 | coding | downstream | 153594 | 29196589 ~ 29205743 (+) |
| LOC113540294 | LOC108267627,LOC108267624 | coding | downstream | 165339 | 29208334 ~ 29218020 (+) |
| LOC113539851 | LOC108267627 | coding | downstream | 176531 | 29219526 ~ 29225911 (+) |
| G72913 | NA | non-coding | upstream | 6365 | 28933983 ~ 28934309 (+) |
| G72910 | NA | non-coding | upstream | 9276 | 28931076 ~ 28931398 (+) |
| G72892 | NA | non-coding | upstream | 22276 | 28917742 ~ 28918398 (+) |
| G72889 | dnajb4,LOC107708915,LOC107566472,LOC107690981 | non-coding | upstream | 25416 | 28914629 ~ 28915258 (+) |
| G72869 | NA | non-coding | upstream | 39413 | 28862416 ~ 28901261 (+) |
| G72917 | NA | non-coding | downstream | 10491 | 29053486 ~ 29054218 (+) |
| G73000 | LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107565821,LOC107722302 | non-coding | downstream | 256140 | 29299135 ~ 29301133 (+) |
| G73072 | NA | non-coding | downstream | 440267 | 29483262 ~ 29524242 (+) |
| G73069 | eif4a2,LOC107708841,LOC107103884 | non-coding | downstream | 476113 | 29519108 ~ 29521022 (+) |
| G73088 | NA | non-coding | downstream | 481303 | 29524298 ~ 29524836 (+) |
| G72873 | NA | other | upstream | 28570 | 28874356 ~ 28912104 (+) |
| selenot1a | selenot,selt1a,LOC107681817,LOC107708642 | other | upstream | 143515 | 28792847 ~ 28797159 (+) |
| gng5 | NA | other | upstream | 179223 | 28758545 ~ 28761451 (+) |
| insig1 | insig1 | other | upstream | 557252 | 28302851 ~ 28383422 (+) |
| fubp1 | fubp1 | other | downstream | 138772 | 29181767 ~ 29196149 (+) |
| asip2b | NA | other | downstream | 576998 | 29619993 ~ 29623797 (+) |
| zgc:153115 | LOC108268059 | other | downstream | 630519 | 29673514 ~ 29681175 (+) |
| uggt1 | uggt1,LOC107748935,LOC107683622,LOC107727334 | other | downstream | 1411762 | 30454757 ~ 30478293 (+) |
| G73944 | NA | other | downstream | 1703136 | 30746131 ~ 30767132 (+) |
