cope (cope,LOC107709006,LOC107681743)


Basic Information

Item Value
gene id cope
gene name cope,LOC107709006,LOC107681743
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28923611 ~ 28930532 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936508.2
AAAGAACTAACTAAACATCATTCATAGCTATTACAGCAACATGGCGTCGCAGCAGGGAGAAGTAGATGAACTGTTCGATGTGAAAAATGCCTTTTATATCGGGAGTTATCAACACTGCATTAACGAGGCTCAGAAAGTAAAGACTTCCGGACCTGAGAAAGAACTGGAGAAGGATATTTTCCTGTACAGAGCGTACATTGCacagAGGAAGTATGGAGTGGTGCTGGAGGACATAAAGCCGAGTTTCTCAGAGGAGCTGAAAGCCGTGCGGATGTTTGCAGATTACATGTCCAGCGAGGCCAAAAGGGACGCCATCGTGGCTGAGCTGGATAAGAAAATGAGTAAGAGCGTGGACGTGTCCAACACCACCTTCCTGCTGATGGCCGCTTCCATCTACCTGCACGAGGGGAACACGGACGCGGCGCTGCGCACGCTGCACCAGGGCGAGAGCCTCGAGTGcatggcGATGAGCGTTCAGATCCTTCTCAAGCTGGACAGAGTCGATATGGCAAGGAAGGAGCTGAAGAAGATGCAGGAGCAGGATGAAGACGCCACGCTGACTCAGCTGGCCACGGCCTGGCTGAACCTCGCTGTCGGAGGAGAGAAGCTGCAGGACGCCTTCTACATCTTCCAGGAGATGGCTGATAAATACTCGCCCACTCTGATCCTGCTGAACGGCCAGGCCGCGTGTCACATGGCGCAGTGCAAATGGGACGAGGCCGAGTCGGTCCTGCAGGACGCCCTGGATAAAgacAGCAGCCATCCTGAAACACTCATCAACCTGATCGTGTTAACGCAGCATCTGGGTAAACCTCCCGAGGTCACAAATCGCTATCTGTCTCAGCTGAAAGACGCCCACAAGTCGCATCCTTTTGTGAAGGACTATCTCACTAAGGAGAACGAATTCGACAGACTTGTGATGCAGTACGCTCCCAGCGCCTGAACACAGCCGACTCCTGACCTTCTAATcctcacatttttttgttgtcaatatatttttctttattctataAGCATTCCTGTGTACTGATTTAATAAATCCCTTTACGCCACA

Function

symbol description
cope Predicted to enable structural molecule activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPE (COPI coat complex subunit epsilon).

NR:

description
coatomer subunit epsilon

GO:

id name namespace
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17268 COPE; coatomer subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936508.2 True 1054 mRNA 0.51 10 28923611 28930532

Neighbor

gene id symbol gene type direction distance location
LOC117597035 NA coding upstream 17215 28901530 ~ 28906396 (+)
LOC117597120 NA coding upstream 36055 28885151 ~ 28887556 (+)
LOC117597034 NA coding upstream 55433 28863057 ~ 28868178 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672,LOC107681819 coding upstream 80849 28832373 ~ 28842762 (+)
LOC113540201 LOC108267859 coding upstream 91883 28827952 ~ 28831728 (+)
st6galnac5a st6galnac3,st6galnac5,st6galnac5a,LOC107751866,LOC107708707,LOC107681827,LOC107599846,LOC107703199,LOC107558179 coding downstream 10142 28940674 ~ 29042995 (+)
ak5 ak5,LOC107703241,LOC107681791,LOC107599844 coding downstream 149652 29080184 ~ 29128564 (+)
miga1 miga1 coding downstream 242224 29172756 ~ 29184256 (+)
LOC113540202 LOC108267626,LOC108437507 coding downstream 266057 29196589 ~ 29205743 (+)
LOC113540294 LOC108267627,LOC108267624 coding downstream 277802 29208334 ~ 29218020 (+)
G72892 NA non-coding upstream 5213 28917742 ~ 28918398 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding upstream 8353 28914629 ~ 28915258 (+)
G72869 NA non-coding upstream 22350 28862416 ~ 28901261 (+)
G72872 NA non-coding upstream 49623 28873603 ~ 28873988 (+)
G72472 NA non-coding upstream 131775 28787617 ~ 28791836 (+)
G72910 NA non-coding downstream 544 28931076 ~ 28931398 (+)
G72913 NA non-coding downstream 3451 28933983 ~ 28934309 (+)
G72917 NA non-coding downstream 122954 29053486 ~ 29054218 (+)
G73000 LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107565821,LOC107722302 non-coding downstream 368603 29299135 ~ 29301133 (+)
G73072 NA non-coding downstream 552730 29483262 ~ 29524242 (+)
G72873 NA other upstream 11507 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 126452 28792847 ~ 28797159 (+)
gng5 NA other upstream 162160 28758545 ~ 28761451 (+)
insig1 insig1 other upstream 540189 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 585438 28316404 ~ 28338173 (+)
fubp1 fubp1 other downstream 251235 29181767 ~ 29196149 (+)
asip2b NA other downstream 689461 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 742982 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 1524225 30454757 ~ 30478293 (+)
G73944 NA other downstream 1815599 30746131 ~ 30767132 (+)

Expression


Co-expression Network