fam78ba (LOC108267646,LOC108430701,LOC103149501,LOC101155797,LOC105925252,LOC103479089,LOC101481240)


Basic Information

Item Value
gene id fam78ba
gene name LOC108267646,LOC108430701,LOC103149501,LOC101155797,LOC105925252,LOC103479089,LOC101481240
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27441509 ~ 27447248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936528.2
gctgctccgtGCGCGTGACCTGAATAACCATCAGCACTAGTTACGATTGAACAGCGACCGTTGTGTTTTACCGTGAAAATAAAAACGTTTCGTTTAATTCCTTGATTTATGAGTTAATATGGATACATTTTTAATCTAAAGATGCATCCCGAGGATTATTCAGATTCGACGGGTTTGTGTTTCCGGTGCCGTCATCCAGCGCGCGCGTGTTGTCTGAGCCTCGGCTCGAGCAGGATCCCTTCGGCTCGGATGCTgctgccgccgccgccgcctCTTTCAGCACCTCGCCACTGACATGACGGCGGGGACAGAGGGCGCAGAGACAGGCACGGTGGGGACGTGGGAACCGGAAACCGAGCGCATCCGAACCGCGTCGCGTGCGCAACCGAGCGCGGGGACAAACGCCAAGGGCAGTGCGGCACTCCGCGGGAGGagaggtggaggaagaggaggaagaggaggaggaggtggtggtggaggaagagaaggaagaaggGGGGGTCGAGTAGAGCTACCTTTCACCTCGTTTCTCTACACTCttctttattcctttcatttttattgtttttccctCCAAAATGGCTTAAACGCGCGCGCGACATCCGTGTCATTCCCTTTGGTCGCTTGGTAACCCGCAGTGGCGCTCGCGACCCACATCGCTCTTTCTGAATGAATAGACCTTAATTTAAATACAGCTGAAattctctctttcctttattattattattattttatttcacaaagtCGGAGTGTTAATTAAGTAATTTATGTCATTATCAGTTCTTTATAGATTCTGCTTTTTTATCATAAAATAGCGACACTTATCCGCACTAGCTAACTAGGCTAGCTTCCTAGTGAATGTCCGTTACTTTTTTGAcgtcagtttaaaaaaaaatagagctcGCGAGCCACTTATTATTTGTATAAACTAATTAACgtgttaattattaatagttAAATAATTTCTTCTTAAACTTCTTTAAGAAAACCTcagtatttgattttttttttgctaagctAACTCCGCAACTTCATTAATGTATTCAGGGAAAGTTAGCTAGTGATGTTTTATCCTTAGCTAGCTTAGCTTACCTTAGCTACTGCTACAGCTACAGCAGGCTAGCTAACTGTTTTAAACGGATCTGTTTATGTGTTAGGAAGAAATGGCtatatgtgtaatatttaatgaagaaactgatattattgttattaaccAAACCTTTCAATCACACTGCATAAAAATTACCTCAGAAATAGGAGCATAGCGGCAAAGCTAATTTTGTAGCCTGACAacagctcactgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgagtgtagttcTACACTACAATACATTATTAGCAATACGTCAACGTTTTTCCAGGTGGTAAGGTGCAAGCGTTACTGTTACATTGCTAAGGGACTTGAACATATGAGCGTAAGGCTCCGAACTGTCTTGTTCCTGCCGTCGCTTCTCGCGATCGCGCTCGCGCTCCTCGCAGGCGGGGCCATGGGCTGCCTCCAGAGCGTGGCGTGTAAGCCGCGCGTGCGGCGCGAGAACATCGTGGTCTACGAGGTGTCGGCGTCCATCGACCGGAGCCCCACGGTGGTGGAGGAGAACTCGCCCATTGTGCTGCGTTACCGGACGCCCTACTTCCGCGCCTCCGCCGGGGTCGTGATGCCGCCCGTGCCCAGGAACGAGACGTGGACGGTGGGCTGGATTCAGGCGTGTACGCAGATGGAGTTTTACAACACGTACGGAGACGCGGGCGCGTCGAGCTGGGAGCTGCCGGAACTGCGCGAAGGCCGCGTGAAAGCCATCAGCGACTCAGATGGCGTCAGCTACCCGTGGTACGGCAACACTACAGAAACCGTGACTATCACAGGTCCGACGTCCAAGCCGTCGCGCCTCACCGTCAGCATGAACGACAACTTCTACCCGAGCGTGACGTGGGCGGTGCCCGTGGGCGAGAGCAGTGCCCCGGCACTCACTCGCGTCACTCGTGACCAGAGCTTCATCACGTGGTTGGTGGCACTGAACACTGTGACGCGTGAGAAGATCCTGCTGCAGACGGTGAGGTGGCGCATGCGGGTCGACATTGCCATCGATCCTACGATGCCGCTGGGCTCCCGAGCTACTCTGGTCAGCCAAACGTACCAGGAACAGCCGCTCATCCTCACCAACAATGAACCCATTCCGCCAAACGCACTGACGAGACCCAACGCCAATGATGCACAGGTGTTAATGTGGAGGCCAAGGAGGGGGCCACCGCTAGTCGTCATCCCCTCCAAATAGACCAGTTAGTCAAAACTGGATCACGGTGTAATGTGGCAAAAATGCATCCATTAGCATCTGTCTGCCCTCTGTGCAGGAGTATGGCATCATGGAAAATCGTGGGAGGGTTAGTGGACGGTTTTACAAATGAATGGTCAAAACTTGTCTGTGCGTGAGCAATGGATGATGGGAAATGAAGGGTTCCTCAATGATGGACTGCTAATGGAGAAATGAATCCCAATGCTGAGAAAGGTGAAAAATCAGTTTAACAGTTATGTCGGACTGTAGGGTGACGCTCCTCAGTGCAGGACGATAAGTACCCTAATcttgatcagtgattgattgATACAGACTTCATTGTGCACAAGCAAGTGGCACTGAATTACACCAAACTCGAGAAGTATTATTAGTATAAGAAGCTTCAGATCTTTCACACCGCTTTAGAGAATGCTAGCAGAGATGCTTAGCTAGCAAACATGACTCAAGCAGTGACTGAGAGGTGTAGCATGATTAGcgatgtctcacacacacacacacagacacacagaaagctGGTAGGAGTGTGTTTCTGTCCTCCTGCCTGATCCGGAACGAGTTTCCCCTCACTCTTCCTCACTCAGGTGCTGCACTGTAGGCAGTTTCCATATTAGCACACACTCCATCTGTCCTCCATCCCTCCTGCATCCCTCTCTCCCGTCCCCCATCTGTCCTCCACCCCACCCCGTcctctcacacagacactctgCAGGTCCTTTCAGCATTAATTTTCCATCACGTAAACCTCCTACACCCAAGCATAGCTAATTATTGttaatcagcacacacacagacaaattaaatgaatgtgGAAATAAATCATGATTATTTTCGGGTAAAGGAAATGCAGGCAGTCGAAATGAAAATGCCTTCAAAAGTTAGTCTGCATGTGGTTAGTTTCTCCAtcagtctttttctgtctctctttttcttattctttttctatATCTCATTGTCTCTATCTGTCactatttatctgtctatctatctacccatctatctatctttaaATTATTCTCCAGTTAGCTCCCAGGTTAATTCCTGACCCTTTAACCCTATCAAGCCTACAAGGTAATCATGTGACTAAGGCGGTCTTGTGACTGGAgagctcacacatgcacacacccacacccacacacacagtgttgtatCAAACCAGGATGTTAAACACCAGCAGCATATTTGGACGTCACACCTGAAAATCATTTTGATCTTAAACGATGACATTTTCTTAGAGGAAAAATAAACTAGTTTCTCAAAAttgaaacaaataattaaatgaaagacCTTTCTTGAAGATCAACACTTAACGCCTCTGCAGCTGATTTCACTTTGAATATTGCTTCTTCGTATCCATATCAAGTCTATGCAATGGCTGCACACGTGCTAGCTAACtgttaagaagaagaagcctcGGACTCAGAGCATGGAAAGTTGTTTAAGCGACGGAGGAGATTCACTTTTCTTGCATGCCAGTGGTTTTATTGGAAACAAACTGTGATGTGTTTCTGTCGTTTGTGTTGAAGGGTGGTGAACTCTTCAGGTCGGCTTTGAATAAAAGAATACTGAG

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein FAM78B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936528.2 True 3887 mRNA 0.47 2 27441509 27447248

Neighbor

gene id symbol gene type direction distance location
bcl6ab LOC108268038 coding upstream 14815 27421285 ~ 27426694 (+)
tctex1d1 tctex1d1 coding upstream 28729 27410223 ~ 27412780 (+)
pde4bb pde4bb,LOC108267485,LOC108430746,LOC107681771,LOC107719260,LOC107593782,LOC107671696,LOC107559365 coding upstream 70478 27325751 ~ 27371031 (+)
LOC113540484 leprot,LOC108430744 coding upstream 123497 27313077 ~ 27318012 (+)
LOC113539841 LOC108267486,LOC107719261,LOC107593886,LOC107671769,LOC107559363,LOC107754779 coding upstream 154855 27274172 ~ 27286654 (+)
imp3 imp3,LOC107671714 coding downstream 13020 27460268 ~ 27466505 (+)
zgc:55943 c7h1orf21,zgc:55943,LOC108430752,LOC103042176,LOC107709356,LOC107671715,LOC107559369,LOC107593773 coding downstream 20800 27468048 ~ 27477673 (+)
trnat-ugu_5 NA coding downstream 42005 27489253 ~ 27489325 (+)
abi1b abi1b,LOC108267643,LOC107671751,LOC107559371,LOC108430754,LOC107681778 coding downstream 48600 27495848 ~ 27508199 (+)
si:ch211-252f13.5 LOC108267682 coding downstream 62602 27509850 ~ 27517204 (+)
G72005 NA non-coding upstream 12287 27428419 ~ 27429222 (+)
G71980 NA non-coding upstream 60437 27380848 ~ 27381072 (+)
G71977 NA non-coding upstream 69831 27371473 ~ 27371678 (+)
G71942 NA non-coding upstream 146145 27293356 ~ 27295364 (+)
G71939 NA non-coding upstream 151804 27287173 ~ 27289705 (+)
G72012 NA non-coding downstream 12422 27459670 ~ 27460197 (+)
LOC113540179 NA non-coding downstream 36572 27483820 ~ 27487711 (+)
G72118 NA non-coding downstream 105879 27553127 ~ 27555706 (+)
LOC113540592 NA non-coding downstream 108837 27556085 ~ 27559427 (+)
LOC113540695 NA non-coding downstream 109269 27556517 ~ 27556648 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 35111 27384807 ~ 27406398 (+)
gng7 NA other upstream 560039 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 1065683 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1148725 26288290 ~ 26292784 (+)
G71385 NA other upstream 1212318 26228764 ~ 26229191 (+)
insig1 insig1 other downstream 855603 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 869156 28316404 ~ 28338173 (+)
gng5 NA other downstream 1311297 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1345599 28792847 ~ 28797159 (+)
G72873 NA other downstream 1427108 28874356 ~ 28912104 (+)

Expression


Co-expression Network