plaa (plaa,LOC107549730,LOC107661955,LOC107660709)


Basic Information

Item Value
gene id plaa
gene name plaa,LOC107549730,LOC107661955,LOC107660709
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 15992175 ~ 16000945 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936548.2
ATGGCTTCCTGTAGCTCATATCGGCTGAGTTGCTCCATTCCGGGTCATGAGATGGATGTCAGAGGGCTCGCAGCGACGTTTTTTCCACATGGAGCTTTTGTTTCCGTGTCCAGAGACAGAACAGCCAAAGTCTGGGTGCCGCATTCGAGTGAGAACAGGGGCTACACAGAGATGCACTGCATGAACGGCCACAACAACTTCGTGTCCTGCGTGTGCATCATCGCCCCCAACGAGACGTACCCCCGCGGCCTCATCGCCACCGGCGGCAACGACCACAACATCTGCATCTTCTCACTGGATCGACCAGATCCTCTCTTCACTCTAAAGGGCCATAAAAACACAGTGTGTTCACTGTCAGCTGGGAAGTTCGGGACGTTGCTGAGTGGATCATGGGACACAACAGCCAAAGTCTGGCTTAGTGACAAGTGTATGATGACCTTACAGGGGCACACAGCAGCGGTGTGGGCGGTTGTCATTTTGCCAGAGCAGGGTCTTATGCTCACAGGATCCGCTGACAAAACTGTTAAACTCTGGAAAGCAGGCCGTTGTGAAAGAACATACTCAGGTCATGAGGACTGTGTCCGAGGACTAGCTGTGCTGAACAACCTGGAGTTTTTCTCCTGTAGCAATGACGCCAGCATCAGACGATGGATGGTGTCAGGAGAATGCGTTCAAGTCTATTACAGTCACACCAACTACATCTACAGTTTGGCTGTCTTCCCCAATGGTCAAGACTTCGTAAGCACAGGAGAGGACAGGACGGTCCGTATCTGGAAAAATGGTGAATGCGCTCAGACCATCCGTCTGCCTGCCCAGTCAGTCTggtgctgctgtgtgctgccCAATGGAGACATTGTTATAGGGGCAAGCGACGGCATGATCCGAGTGTTTACTGAGAATGAGGAACGTGTAGCGAGTGCTCAGGATCTGCAAGCGTTCGAGGAAGAGCTCTCCAAAGCCACTATTGACCCCAAGACTGGAGACCTGGGAGACATCAAGATAGAGGAGTTACCAGGCAGAGAACATTTAAATGAGCCAGGGAATCGAGATGGGCAGACACGGCTCATAAAGGAAGGCACTAATGTCGAGGCGTACCAGTGGAGCATGAGTGACAGCCGCTGGGTGAAGATTGGAGATGTGGTGGGCGGCTCCTCCAAGCAGAACTCCAAGAGCGTAATGTATGAGGGCAAGGAGTATGATTTTGTTTTCACCATTGATATAAATGAGGGTGGGCCCTCCATGAAGCTGCCCTATAACGTGACTGATGACCCCTGGCTGGCAGCACATAACTTTCTGCAGAAGAATGACCTGAACCCCATGTTCCTGGACCAGGTGGCTAACTTCATCATCGAGAACACCAAGGGACACACGCTAGGCCCAGCACCAGCCACTGCTGTTGATCCGTTTACAGgTGCAGGACGTTATATTCCAGGGTCACCAGACCCAAGACAAGGGTTTGGAACAGACCCCTTCACAGGTGCCGGGCGATACATACCCGGATCAGGACCTGCACCTACAGCGTCTACAGGTGTGGCTGATCCCTTCACAGGTGGCAGTGCCTACTCTTCTGCTGCTCTCCAGAAGTCCgtcacaaatatttatttccccAAAACAGACGGAGTTATGTTTGAGCAGGCCAATGCTACACAGATCCTTGCTAAGCTGCGGGAGCTGAATGGCAACGCTCCGGAGGACCGCAGGCTGAGCGATGAGGTGTTGGGCAGTCTGGAGAAACTGCTGTTCACAGTGTCAGATGCTAAGAGCCAAGATCAGCCTACAGCTGAACAAATCGGCATCCTCTGGAGGACCAGCCACTGGCCTGAAGATATTGTCTTCCCCATACTGGACATTCTGCGTATGGCTGTGCGCCACCCTGAGATCAATGCTCAGATGTGTGGAGGAACAGAAGGTGCCAGTCTCTGTAACCACCTACTGGGCCTCATGTCTCCAGAGGGCCGGGCGGCCAATCAAATGCTGGCTTTGCGTATATTCTGTAACTGTTTCTCTGGATCCCGTGGCCGCTCCCTGCTCCTGGGCCAGAGGGAAGCGGTGCTTTCCCGGGCCGCTGAGCTCCGCACTGTCTGTAATAAAAACATCCACGTGGCTCTGGCCACTCTGGTGCTGAACTATGCAGGTGTGCTGCATGGCCAAGATGTTGAGATCGAGGCCAAAGCCCAGTGCTTATCAGTGGCTAGCAGTGCTCTGGAGGTAGTGCAGGACAAAGAGGCTGTGTTTAGGCTTCTAGTAGCACTTGGAACTACAGTGTCCGGAGACAGCACGGCCAAAGATCTGGCACGCTCGCTAGGAGTTGCATCGCAGATCACAAAGTATGCCAGCGTGTCTGACCCGGCTAAAGTGGGCGAGTGCTGTCGACTGCTGCTGGATGAACTGCAGTGATGTCACACGGAGCACATATCTGCCTGCAGCTGTTTTACATGATCTTCTTACGTTGCAGCTACTCAGCACTTAGTTTCTGTTTAACTGTTTCTGCTTCCTGGTggtgaatgactgaatgaatgcaTGATATGAATAAAACAATGATGTATAGTAA

Function

symbol description
plaa Predicted to enable ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and ubiquitin recycling. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including eye; ovary; pectoral fin musculature; solid lens vesicle; and trigeminal placode. Orthologous to human PLAA (phospholipase A2 activating protein).

NR:

description
PREDICTED: phospholipase A-2-activating protein

GO: NA

KEGG:

id description
K14018 PLAA, DOA1, UFD3; phospholipase A-2-activating protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936548.2 True 2551 mRNA 0.53 14 15992175 16000945

Neighbor

gene id symbol gene type direction distance location
cckar cckar coding upstream 75254 15904355 ~ 15916921 (+)
zmp:0000000660 arap2 coding upstream 1023574 14889300 ~ 14968601 (+)
paqr9 paqr9 coding upstream 1162264 14824102 ~ 14829911 (+)
adam19a adam19a,LOC108267694,LOC108428568,LOC107708434 coding upstream 1230610 14686254 ~ 14761565 (+)
LOC113540153 nwd2,LOC107661962 coding upstream 1369651 14576397 ~ 14622524 (+)
htra3b htra3,LOC107757896,LOC107707797,LOC107660743,LOC107661977,LOC107549726 coding downstream 39260 16040205 ~ 16050628 (+)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 84732 16085677 ~ 16092460 (+)
si:ch211-212k18.5 sall2 coding downstream 97938 16098883 ~ 16107737 (+)
slc7a7 slc7a7,LOC107558406,LOC107738042,LOC107683525,LOC107731885,LOC107574338 coding downstream 108031 16108976 ~ 16120319 (+)
casp23 NA coding downstream 124071 16125016 ~ 16129309 (+)
G65115 NA non-coding upstream 121404 15869198 ~ 15870771 (+)
LOC117597190 NA non-coding upstream 435251 15506292 ~ 15556924 (+)
G64963 NA non-coding upstream 790647 15201309 ~ 15201528 (+)
LOC117597182 NA non-coding upstream 980682 14977326 ~ 15011493 (+)
G64673 NA non-coding upstream 1229579 14762335 ~ 14762596 (+)
G65170 NA non-coding downstream 210 16001155 ~ 16001461 (+)
G65184 NA non-coding downstream 18912 16019857 ~ 16055145 (+)
G65199 NA non-coding downstream 61143 16062088 ~ 16063461 (+)
G65335 znf638 non-coding downstream 222473 16223418 ~ 16231115 (+)
G65382 NA non-coding downstream 391184 16392129 ~ 16392363 (+)
zgc:194930 LOC108268002 other upstream 1333239 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 1722835 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2272721 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2429909 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 2517138 13468552 ~ 13475037 (+)
LOC113540079 sh3tc1 other downstream 22249 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 309268 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 367011 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1334552 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1608547 17609492 ~ 17620079 (+)

Expression


Co-expression Network