sec62 (sec62)


Basic Information

Item Value
gene id sec62
gene name sec62
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26823686 ~ 26831573 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936552.2
CTTACTGACGCGGTATTATCGCCTGGTCACGTGATCACGTTGGtcgagggggaaaaaaaatttagcaTCATGGCGGAGCGCAGGAGACACAAGAAGCGAATTCAGGAGGTGAGTGAACCAACCAAGGAGGAGAAGGCAGTGGCCAAATACCTGCGCTTTAACTGCCCTACCAAGTCCACTAACATGATGGGCCATCGAGTCGACTACTTCATAGCATCTAAAGCGGTGGACTGTCTGCTCGACTCTAAATGGGCCAAATCAAAGAAACCTGAGGAAGCTTTATTCACCACCAGGGAGTCTGTGGTGGATTACTGCAACAGGCTCCTGAAGAAGCAATTCTTCCACCGAGCTTTGAAGGTGATGAAGAAGAAACCGGAGAAAGACCCAAAGAAGGAGAAGGTGAAAGGTGACGGAGgcaaagaggaagagaagaagagcaagaaggagaaagagaaagagaaggagaaggagaagaaaaaagacacTGAGGCCACAGACACCAAGAAGGAAAAGAGCgatgaaaGTCCAGGATCCccgaagaagaagaaagaggttAAGAAGAAGTTTAAACTGGAGCCTCATGAGGATCAGCTGTTTCTGGATGGGAACGAGGTGTATGTGTGGATTTATGACCCGGtccattttaaaacttttgctATGGGACTGGTGTTGGtgattgCAGTGATAGCTGCGACACTGTTCCCCCTGTGGCCAGCGGAGATGAGGGTGGGTGTGTattacctgagtgtgtgtgcaggctgtTTCGTCGCCAGCATCCTTCTCCTTGCTGTTGCTCGCTGTATTCTATTCCTGATCATCTGGTTGGTCACTGGGGGGCGCCATCACTTCTGGTTCCTCCCCAATCTGACTGCAGATGTGGGCTTTGTCGACTCATTCCGTCCCATTTACACGCACGAGTACAAGGGCCCTAGGACGAGCGGCAAGAAGGGCGCAGGGGAGAAGTCCGAGGGCAAGGGTGCCAAGACGCAGAAATCAGACAGCGAGGACAAATCGGATGGtgagaagaaggaggaagaggaagaggaagtggaggaggaagaggaagaggaggcagGGAAGGAGGTGGAGGCAGAGCGGCGCTCAGATTCAGACAGTGAGCGCAGAGAGGACGACGGCTCGCAGCACAGCAACGGAAACGACTTCGAGATGATCACGCGCGATGAGCTTGAGCAGCACActgatgaggaggaagaggaagaagaggaggaggaggaggaggagcaagaGGGAAAAGAGGCGGAGCCCAAACCACACCAGACGTAAACTGTGTAAACATTCATGAGATTCGCCCATCACATCGCACATTGCGATCTTCCACTACAGATGCAcatggggtcaaaggtcaactaCGTCAAAAGCTGGAACATGCCTTCtggcggccattttggatttattttatttcctagttaaaagaaagaaacaaacacacgtacacacacactcaaatactcatacaaatacacacactgtgtatgtgtttactGGTTGTGTAATTAGCATAGACTctcctcgtgtgtgtgtgtgtgtgtgtgtgtttcagatgatctaacacacacaccatacgaTCATCATAGGCTGCTGTTCAGTTTGGACCAATGTTTCTTATTCTaccgtgtgtctgtgtgtgtgtgttgtaagtgTCTGTCTCACACATGCATCTCCAGCAGGTGCTTTGGGGTGATAACATGACTAAAGTAAACGTAATCATCTTCCAAGTCCCGCCCATATTTTTATTCCACACAGCCGTTACTTAACCACTAGGATTCCTGCTTGCATGCTATTGGTCGATGTTGGCGCAGCGCGAGAGCTCTGCGGATGTGGAAAGGGTCCTTCATTAGTGCCAAATCTACCATTTTGGACATCATCTTTACACATCACTAcaaagtaaattttaaaaaaaagttcgtACCTGGAACAAAAAGTCCAAACAGTCCCTCACATCCCCAATAACAGTTTAGACTGTACCGGTTGCCATGGCAACTGATCTGCTGACTTCgtgtggctgtgttccaaaccaCACTTGATAATGTTTGAGTGTTCGACACGTTACCACACCTCGCTGAGTGCAACgacttattttaatttatttagctatCGTGATAGTTTCACTGATTTTTATCACAGTTCCTGATGATATAATGTTGCTCTCTACGTTAAAAGTGGTTTATCCATCACTCTTATTTCCCACACACATCACTAAAGTAACGTTAGCACGGTAACACACATTTGGCTATCATTTCAACATAACGACAGCTTTTGGGAAGTTTTACACAGTTTATTTTCACCTATTGATAATCTTTACTACCTCACCAGCTAATCTCAGCTCACTATGCTAACTACCTAACATTAACCACTAGCTAgcatttttttaagcaattttttaaattctgatgagaaacagtagtGGCTTTATATCACTTCTAAAGCTCACTAGtaaaagacaaattaaataatgaattaatcagtgtgtgatttatgttGCATGCTCAGCTTCATACTAGCTTCagtctcagattagattagcaatgtgagctACCTGTACTAGCTACCTACACTCACCATCGATCTCTGCTGTttctttccaagctttatttttctaattgcaggtaggaactaaagagATGTGGGACCACACGCTCCATAGGATTTCCTTGGAGGAATCATTTGAGAcagtcatttggatttgttgcttctTTGCAGCGTCACACCCAATTTACATAGAGTTGAGTAATCTCATGTCTAATTTTGCTTTCAGTGAAATCACTGCTCCGtgaattttatacaaattaaatgATATCCTGTCACTTTGTCATTCGCTAGCGTCAGTCTGAGATCAAATGTGAGTTAACTTAATTTGAGAcaagtagctagctaacattaacacaaacgCCAACTTGTAGGTAACATCCCTGGTTTTAATGAAACATCTGTAATTAAGCTCAACAACAAAGCTTTTAGTGAAAGCATATGACAGCAACATGGTGTTGAGTCATGTGACCTGGTGGACGGTGGATTGGGACACAGCCAAGACTGGGCTTCAGTTccgtgtttattttatacacatcAATATTTAAAGATAAAAGTACAACTTAGtttttatgtatgtaaatgtgtttatctGAAAATACCACATCATGTAGATACTCTAGTGAAAGATTctgaatctcacacacacactcgcacacacttgATGGAGTGTGGTATGTGATTTAAGTGTATCTGACTCAGTGGCATAGGTAAATTAATGATCGAGTCCATGAGCTGTTTCAGCACTTCatactatttttgtttgtctcatttgcatattcatttgtATATTCATGTGTTCCGTTCTCTCTGTGACATGATGCCCACGTGCCAGCAGGtgttttaaatcaatatttccAGATAGATATAAACCTGAGTGTCCGCCTGTTGCgtgttaataattataataatgtattaatacatGCAGCATTGCCTCATATttctaaatgtgtaaaaataaaatttaaaaaaagtacgaaaatgtggagtgtgtgtgaggagtgtctGACATGGTCCCTGTATCACTGTCTCATCTCTCACTGCAAtaactgtataaaataataaaacatatttacaatagCAGAAGGACTAAACTCCATGAATCATTATGGCATCTAATGAAATGTGTGCACACAGAATACAGCAGCACATCTTTCTCATCATTTCCAACAATGTGATTCCAAATGGAGGGATTTACAAATGTGTGTAACAGAGCTGggataacaatataaaataaagtttatcaGTGATTatcctctttttttta

Function

symbol description
sec62 Predicted to be involved in posttranslational protein targeting to membrane, translocation. Predicted to act upstream of or within protein transport. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human SEC62 (SEC62 homolog, preprotein translocation factor).

NR:

description
PREDICTED: translocation protein SEC62

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12275 SEC62; translocation protein SEC62

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936552.2 True 3814 mRNA 0.43 8 26823686 26831573

Neighbor

gene id symbol gene type direction distance location
gadd45bb LOC108267448 coding upstream 4837 26816061 ~ 26818849 (+)
apoda.1 LOC108267187 coding upstream 53442 26766984 ~ 26770244 (+)
ifi44c2 NA coding upstream 59082 26751636 ~ 26764604 (+)
si:dkey-193b15.8 LOC108268053 coding upstream 85408 26735443 ~ 26738278 (+)
nrd1a nrd1a,LOC108268052 coding upstream 88090 26719230 ~ 26735596 (+)
elavl1a elavl1,LOC108267445,LOC108444333,LOC107684401,LOC103034406,LOC107591334,LOC107557423 coding downstream 15318 26846891 ~ 26854149 (+)
zgc:101744 LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183 coding downstream 25958 26857531 ~ 26865515 (+)
gpr160 gpr160 coding downstream 69274 26900847 ~ 26902366 (+)
LOC113539948 NA coding downstream 109754 26941327 ~ 26951857 (+)
LOC113540685 LOC108267717 coding downstream 152168 26983741 ~ 27013645 (+)
G71550 NA non-coding upstream 37126 26784572 ~ 26786560 (+)
G71519 NA non-coding upstream 155558 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 272660 26472575 ~ 26551026 (+)
G71482 NA non-coding upstream 359372 26464011 ~ 26464314 (+)
G71408 NA non-coding upstream 528704 26294755 ~ 26294982 (+)
G71819 NA non-coding downstream 211130 27042703 ~ 27042912 (+)
G71827 NA non-coding downstream 242268 27073841 ~ 27074076 (+)
G71864 NA non-coding downstream 364428 27196001 ~ 27196373 (+)
G71868 NA non-coding downstream 385779 27217352 ~ 27217839 (+)
G71869 NA non-coding downstream 386654 27218227 ~ 27218455 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 447860 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 530902 26288290 ~ 26292784 (+)
G71385 NA other upstream 594495 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 599648 26216064 ~ 26224038 (+)
LOC113539772 kiaa0040 other upstream 921680 25897017 ~ 25902006 (+)
gng7 NA other downstream 41103 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 553234 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1471278 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1484831 28316404 ~ 28338173 (+)
gng5 NA other downstream 1926972 28758545 ~ 28761451 (+)

Expression


Co-expression Network