hdac8 (hdac8,LOC107707919,LOC107711573,LOC107695331)


Basic Information

Item Value
gene id hdac8
gene name hdac8,LOC107707919,LOC107711573,LOC107695331
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13533817 ~ 13553948 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936560.2
ttattttgaagtCCTGTAGCACTACCTACCGGAAGTCGGTGATATTGGTGGTATTGGATTTAAACCCCTCAAGATAGCGCCtgagttatttttctttttgaatcCTGACTTCACTAGTTTTGAGGGTGAGGTGTTAAATGTGCGACAGCGGCGACTCTAAGGATGGGAAACCCACCAAACGCAGCGTGGTGTATATTTACAGCCCGGACTATGTGGAGACCTGCGACTCTCTATCAAAAGTCCCAAACCGAGCGAGTATGGTGCATTCTCTGATTGAAGCTTATGGCTTATTAAATCAtatgagTGTGGTTAAGCCTCATGTGGCTACGATGGAGGAGATGGCAGTGTTTCATACACACTCTTACCTCGAGCATCTGCACAAGATCAGCCAGAATGGAGACAATGATGATCCCCAGTCTGTGGATTTTGGGCTGGGGTATGATTGTCCAGTGGTGGAGGGCATATTTGAGTACGCGGCTGCAGTTGGTGGAGCCACTCTGACGGCCGCCCAGTGTCTGCTGGATGGAAAGTGTGAAGTTGCCATCAATTGGGCAGGAGGCTGGCACCATGCCAAAAAggacgAGGCGTCAGGGTTCTGCTATGTGAACGATGCTGTTTTGGGGATCCTTAAACTGCGAGAGAAGTATGAGAGAGTGCTTTATATAGATGTGGACCTTCACCATGGTGACGGCGTAGAAGATGCCTTCAGCTTCACTTCCAAAGTGATGACTGTGTCTCTGCATAAGTTCTCTCCTGGCTTCTTCCCAGGTACAGGTGATGTGTCCGACACAGGCCTTGGGAAGGGCAGGTGGTATGCTGTTAATGTGCCTCTGGAGGACGGAATCAGAGACGATCGCTACCTCCAGGTCTTCACCAGTGTCATACAGGAAGTGAAAGTGCTGTTTAACCCTGAAGCAGTAGTGATGCAGTTAGGGGCGGACACCATGGCTGGCGACCCCATGTGCTCCTTTAACATGACTCCAGTTGGGGTGAGCAAGTGCCTGAGCCATGTGCTGGAGTGGAAGTTACCTACACTGCTGCTGGGAGgaggtgggtATAACCTTGCCAATACTGCCCGCTGCTGGACCTATCTGACAGGGACAGTCCTGGAACAGACTCTATCCTCAGAGATACCAGACCACGAGTTCTTTACGGAATACGGTCCGGATTACACTCTGGAGATAAGCCCGAGCTGCCGACCCGATCGCAACGAGAGCCAGCAGTTGGAGCGGACCATCAGCACTATCAAAGGGAATCTGAAGAATGTCGTTTAAGCACTGGGCTCTAAGCTCATGTTTCCAAATCAGACTCTGCTCTCCTAATGAAGACAGTATGTGGGAGCCATCAACGGAGTGGAGTTTTGGAAAACATTACTCGAATGTTTCCGAAGAGCTTTGTTTAATGGGAAAATGAGCAGGCCAGTGTTGCCCCATGCGAGAAGTCTATAGTTAGAGTGAGTCACGAGGTGAAGAGTCCACAGGGTTttatcataattttaaaattccATTGATATTTTGAATTGAAAAGCAAGACCTGACCTAGCCAATCCTATACACTTAGACTAAAACATGTCAAGAAAGAATTTTAATGGTGGTATTTGGTGCTTTTTCCGTCAGTGCGGTTTTTGTTTTGATAGCCATCGCTTGTTATCTTCATGGATCCTCTTCAGAAATGCTTTTCAAGTTGGAGTACAtgtttagtgtttgaatttgttGTCAAAGATAgtcacttgtttttattttctatgtatTCTTTTAAATGGTATGCCTCTCCGTGTTCCCTGGTGAAATGGAGTCAGTCATATAATGctgccaacacacactcatactctccaaaaacataacaaactgCTCCACCCAGGCatgctcacagaaactggaagATGGACAAAAAGGATAGAGGGATGAGAATGAAGAGTGTAGGTCAACGAAACTTAACTTGTTTGATGCTGTTGCCCCATTTAAGAATTTTTATTCTTCTAAAATCTGTGGATTTTAACATTGCAGTGTAAATATTGCTTTCTTAATAAAATCCTAaggataagt
>XM_026936562.2
CGAGTTGTCATTAGCAACGTCCAGGATTGATGTAGTGTTGAGTCGGTGCGAGCTTCCTTACTCCAGGCTTCAGGATGTGTAGCTAGCTATGAGCTATTTTACAGCTTCCTGATCTCACATACTGCTTATACATGAAGATGTGGTTAAGCCTCATGTGGCTACGATGGAGGAGATGGCAGTGTTTCATACACACTCTTACCTCGAGCATCTGCACAAGATCAGCCAGAATGGAGACAATGATGATCCCCAGTCTGTGGATTTTGGGCTGGGGTATGATTGTCCAGTGGTGGAGGGCATATTTGAGTACGCGGCTGCAGTTGGTGGAGCCACTCTGACGGCCGCCCAGTGTCTGCTGGATGGAAAGTGTGAAGTTGCCATCAATTGGGCAGGAGGCTGGCACCATGCCAAAAAggacgAGGCGTCAGGGTTCTGCTATGTGAACGATGCTGTTTTGGGGATCCTTAAACTGCGAGAGAAGTATGAGAGAGTGCTTTATATAGATGTGGACCTTCACCATGGTGACGGCGTAGAAGATGCCTTCAGCTTCACTTCCAAAGTGATGACTGTGTCTCTGCATAAGTTCTCTCCTGGCTTCTTCCCAGGTACAGGTGATGTGTCCGACACAGGCCTTGGGAAGGGCAGGTGGTATGCTGTTAATGTGCCTCTGGAGGACGGAATCAGAGACGATCGCTACCTCCAGGTCTTCACCAGTGTCATACAGGAAGTGAAAGTGCTGTTTAACCCTGAAGCAGTAGTGATGCAGTTAGGGGCGGACACCATGGCTGGCGACCCCATGTGCTCCTTTAACATGACTCCAGTTGGGGTGAGCAAGTGCCTGAGCCATGTGCTGGAGTGGAAGTTACCTACACTGCTGCTGGGAGgaggtgggtATAACCTTGCCAATACTGCCCGCTGCTGGACCTATCTGACAGGGACAGTCCTGGAACAGACTCTATCCTCAGAGATACCAGACCACGAGTTCTTTACGGAATACGGTCCGGATTACACTCTGGAGATAAGCCCGAGCTGCCGACCCGATCGCAACGAGAGCCAGCAGTTGGAGCGGACCATCAGCACTATCAAAGGGAATCTGAAGAATGTCGTTTAAGCACTGGGCTCTAAGCTCATGTTTCCAAATCAGACTCTGCTCTCCTAATGAAGACAGTATGTGGGAGCCATCAACGGAGTGGAGTTTTGGAAAACATTACTCGAATGTTTCCGAAGAGCTTTGTTTAATGGGAAAATGAGCAGGCCAGTGTTGCCCCATGCGAGAAGTCTATAGTTAGAGTGAGTCACGAGGTGAAGAGTCCACAGGGTTttatcataattttaaaattccATTGATATTTTGAATTGAAAAGCAAGACCTGACCTAGCCAATCCTATACACTTAGACTAAAACATGTCAAGAAAGAATTTTAATGGTGGTATTTGGTGCTTTTTCCGTCAGTGCGGTTTTTGTTTTGATAGCCATCGCTTGTTATCTTCATGGATCCTCTTCAGAAATGCTTTTCAAGTTGGAGTACAtgtttagtgtttgaatttgttGTCAAAGATAgtcacttgtttttattttctatgtatTCTTTTAAATGGTATGCCTCTCCGTGTTCCCTGGTGAAATGGAGTCAGTCATATAATGctgccaacacacactcatactctccaaaaacataacaaactgCTCCACCCAGGCatgctcacagaaactggaagATGGACAAAAAGGATAGAGGGATGAGAATGAAGAGTGTAGGTCAACGAAACTTAACTTGTTTGATGCTGTTGCCCCATTTAAGAATTTTTATTCTTCTAAAATCTGTGGATTTTAACATTGCAGTGTAAATATTGCTTTCTTAATAAAATCCTAaggataagt

Function

symbol description
hdac8 Predicted to enable histone deacetylase activity. Acts upstream of or within central nervous system development and neuron cellular homeostasis. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be part of histone deacetylase complex. Is expressed in several structures, including brain; eye; fin bud; muscle; and oocyte. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 5 and Wilson-Turner syndrome. Orthologous to human HDAC8 (histone deacetylase 8).

NR:

description
histone deacetylase 8

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016575 histone deacetylation biological_process
GO:0005977 glycogen metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0097372 NAD-dependent histone deacetylase activity (H3-K18 specific) molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0046969 NAD-dependent histone deacetylase activity (H3-K9 specific) molecular_function
GO:0046970 NAD-dependent histone deacetylase activity (H4-K16 specific) molecular_function

KEGG:

id description
K11405 HDAC8; histone deacetylase 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936560.2 True 2045 mRNA 0.46 11 13533817 13553948
XM_026936562.2 False 1879 mRNA 0.46 10 13534154 13553948

Neighbor

gene id symbol gene type direction distance location
si:dkey-33c9.6 LOC108267836 coding upstream 32984 13486536 ~ 13500833 (+)
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding upstream 82994 13443794 ~ 13450823 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding upstream 97221 13420533 ~ 13436596 (+)
dvl2 dvl2 coding upstream 116956 13399435 ~ 13416861 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding upstream 139645 13391809 ~ 13394172 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding downstream 10780 13564728 ~ 13569599 (+)
nhsl2 nhsl2 coding downstream 19686 13573634 ~ 13645984 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding downstream 93233 13647181 ~ 13684599 (+)
rasl11a rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967 coding downstream 138829 13692777 ~ 13699690 (+)
LOC113540276 LOC108267420 coding downstream 170366 13724314 ~ 13738910 (+)
G63936 NA non-coding upstream 29098 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 66091 13459362 ~ 13467726 (+)
G63901 NA non-coding upstream 116376 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 145863 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 266783 13258874 ~ 13267034 (+)
G63976 NA non-coding downstream 16054 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 141701 13695649 ~ 13748072 (+)
G64025 NA non-coding downstream 201596 13755544 ~ 13759751 (+)
G64049 NA non-coding downstream 349493 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 458150 14012098 ~ 14012315 (+)
LOC113539889 LOC108267838 other upstream 58780 13468552 ~ 13475037 (+)
G63903 NA other upstream 115121 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 247983 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 313958 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1238684 12292491 ~ 12295133 (+)
cited1 cited1 other downstream 4675 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 151469 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 701796 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 1078082 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2469246 16023194 ~ 16039984 (+)

Expression


Co-expression Network