cited1 (cited1)


Basic Information

Item Value
gene id cited1
gene name cited1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13558623 ~ 13562266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936564.2
GGTGCCTTTGATTGAGGAGCTGGACTCACTGATCGTGCTGAGGGAAGAGAGACAAGTCTTCAGCAGTGTATAGACCGAGCTTTGCATCTTTCACAGGAACTTGtcaatgcatgtttttttttctcatttatttatcctGCAGATATTTAGTCATTTTGTGACCAGCAGCCAGCCTTGGATCCGGTGTGGTACTGAACCCACTGCTGACTTTCTCAAAGGTGTCACCGGGTAATGAGCTTACTGCTGCTCTCCAGCTCAAGCATGAAGGACCGTGACTCTCTGACCCTCCTGCACTACACAAACTCTGGCAAAACTGGCCCACAGTACCCCCCTCCCAATCTACACTCTTCCTCCCCAGGCCTCACCAAGTCCCAGCCCTTCTGTCTGCAGTCCAGCCAGCACCTCATAGCCTCCATGCAGCTGCAGAAACTCAACAGTCACTATCAGAGCCTGACTGCCTCTACTACAGTCTCTTCTGGACCCAACAGAGGATTCGGCACTGCTTCAATGAGTCCAGCACAAATCCCTGGCCCTGGGATGGCTCAAGGGTCTGGCATCATAGATTCTGATCCAGTGGATGAGGACGTCCTGATGTCTCTGGTAGTGGAACTCGGTTTGGACAGGGCTAATGAACTTCCTGAGCTGTGGCTGGGCCAGAATGAGTTTGACTTCATATCAGATGTGCCTGCTGGGTGCTGACCCCCTATAGGAAAGTCCCCAATCACTTTTTGGCTGCCTCCTTTTTGCACCTGAGACACTGTTGGATAGCTCATGAAAatgtgagaattttttttttgaagactcTCTTCATGTGTAAAGACTTCAAGTTCAAGCTGCAGAGGTATAGGTGACCGTGTACTCTCACAATCAAAAGACTACTTGGACGACTCCAGCAGAGAGCCTCTCTTGAAACTAAAACTTGGTCATTCTCGCTATTCACACTGAGGTCTTGCTTGTTATAATCCTTTCCAAGCTCTGGTTTCAAAGTGGTGCAAGAATTTCTCACAAGTCACCAGACATGGAGTTAAGTCAAGTTTCACACATGGACTAGACCCCCAACACAAGCGCTAccaggtgtgttttttttttaacatctccTACAGAAGCTGGCTGATTGTTTGTATCATAGTTGCATGGATATGtgacttttccttttttttaacttcagtgGTCATCTTCACCACCTGAAGTCGAAATTACAATAAAAGTTGTGAATCCACAATACATTTCTT
>XM_026936565.2
AGAGCAGTTCTTAAAACAATGTCTTGCTTGTGACATTACTGGCACTGTGAATTGTTTCCTTTGGGAAAAGATCCTGGCATGCAGGACTACAAGAAATGCTATTTAAagtttattgaacattttttgtCATAGACCTCATCACAGGTGTCACCGGGTAATGAGCTTACTGCTGCTCTCCAGCTCAAGCATGAAGGACCGTGACTCTCTGACCCTCCTGCACTACACAAACTCTGGCAAAACTGGCCCACAGTACCCCCCTCCCAATCTACACTCTTCCTCCCCAGGCCTCACCAAGTCCCAGCCCTTCTGTCTGCAGTCCAGCCAGCACCTCATAGCCTCCATGCAGCTGCAGAAACTCAACAGTCACTATCAGAGCCTGACTGCCTCTACTACAGTCTCTTCTGGACCCAACAGAGGATTCGGCACTGCTTCAATGAGTCCAGCACAAATCCCTGGCCCTGGGATGGCTCAAGGGTCTGGCATCATAGATTCTGATCCAGTGGATGAGGACGTCCTGATGTCTCTGGTAGTGGAACTCGGTTTGGACAGGGCTAATGAACTTCCTGAGCTGTGGCTGGGCCAGAATGAGTTTGACTTCATATCAGATGTGCCTGCTGGGTGCTGACCCCCTATAGGAAAGTCCCCAATCACTTTTTGGCTGCCTCCTTTTTGCACCTGAGACACTGTTGGATAGCTCATGAAAatgtgagaattttttttttgaagactcTCTTCATGTGTAAAGACTTCAAGTTCAAGCTGCAGAGGTATAGGTGACCGTGTACTCTCACAATCAAAAGACTACTTGGACGACTCCAGCAGAGAGCCTCTCTTGAAACTAAAACTTGGTCATTCTCGCTATTCACACTGAGGTCTTGCTTGTTATAATCCTTTCCAAGCTCTGGTTTCAAAGTGGTGCAAGAATTTCTCACAAGTCACCAGACATGGAGTTAAGTCAAGTTTCACACATGGACTAGACCCCCAACACAAGCGCTAccaggtgtgttttttttttaacatctccTACAGAAGCTGGCTGATTGTTTGTATCATAGTTGCATGGATATGtgacttttccttttttttaacttcagtgGTCATCTTCACCACCTGAAGTCGAAATTACAATAAAAGTTGTGAATCCACAATACATTTCTT
>XR_003404009.2
GGTGCCTTTGATTGAGGAGCTGGACTCACTGATCGTGCTGAGGGAAGAGAGACAAGTCTTCAGCAGTGTATAGACCGAGCTTTGCATCTTTCACAGGAACTTGtcaatgcatgtttttttttctcatttatttatcctGCAGATATTTAGTCATTTTGTGACCAGCAGCCAGCCTTGGATCCGGTGTGGTACTGAACCCACTGCTGACTTTCTCAAAGGTGTCACCGGGTAATGAGCTTACTGCTGCTCTCCAGCTCAAGCATGAAGGACCGTGACTCTCTGACCCTCCTGCACTACACAAACTCTGGCAAAACTGGCCCACAGTACCCCCCTCCCAATCTACACTCTTCCTCCCCAGGCCTCACCAAGTCCCAGCCCTTCTGTCTGCAGTCCAGCCAGCACCTCATAGCCTCCATGCAGCTGCAGAAACTCAACAGTCACTATCAGAGCCTGACTGCCTCTACTACAGTCTCTTCTGGACCCAACAGAGGATTCGGCACTGCTTCAATGAGTCCAGCACAAATCCCTGGCCCTGGGATGGCTCAAGGGTCTGGCATCATAGATTCTGATCCAGTGGATGAGGACGTCCTGATGTCTCTGGTAGTGGAACTCGGTTTGGACAGGGCTAATGAACTTCCTGAGCTGTGGCTGGGCCAGAATGAGTTTGACTTCATATCAGATGTGCCTGCTGGGTGCTGACCCCCTATAGGAAAGTCCCCAATCACTTTTTGGCTGCCTCCTTTTTGCACCTGAGACACTGTTGGATAGCTCATGAAAatgtgagaattttttttttgaagactcTCTTCATGTGTAAAGACTTCAAGTTCAAGCTGCAGAGGTATAGGTGACCGTGTACTCTCACAATCAAAAGACTACTTGGACGACTCCAGCAGAGAGCCTCTCTTGAAACTAAAACTTGGTCATTCTCGCTATTCACACTGAGGTCTTGCTTGTTATAATCCTTTCCAAGCTCTGGTTTCAAAGTGGTGCAAGAATTTCTCACAAGTCACCAGACATGGAGTTAAGTCAAGTTTCACACATGGACTAGACCCCCAACACAAGCGCTAccagtgGTCATCTTCACCACCTGAAGTCGAAATTACAATAAAAGTTGTGAATCCACAATACATTTCTTCTGAAAGACGAGATATTCGTGTGGTCTCTAGTGGATAGGCTTCATCCATTGCCACCTGCCATCTGTGAGTTCTGTCCATACGAGCAGCCGGGTGGTGTATCTGTTCAGTAATGGAAGGTGATCCTGAAACCAGCATGGGCTAATCTTTTCCAAAATGCATGTCATCGCAAGACTCCTTTCCACTGGGGTAACCCGATCTATCAGACAGTTTTCCATGgttaaatatattaatgatgGACGTGTCCATTTCTTCCACTGGTAGCCTCACTTTAAGTCTAGAAAGATTGTGAACAGCAGCAGAAACTCGACAGATAATTCCACGCAAACTAAATAGTTTAGAATATGAACCCTATTACGAAAGCACTATATCTGTACATGTTTAATCAAgtgtctgtttttgtcttgtaTAAGAATAGAAAAATGTTAGGAACGATCTAAAAGACTCTACTGTCATGTCGTTGTTGTTTAGCATTGACTAATGTTGATAAAATAATGTGTTGAACCTGTGTTGATAAAATAATGGAGTAATTTCTTTATTTCGGTTTAACAGTCCTGAATGAATCATAAGTGgtgattgtgtattttttttttttttttgtttagcacTTTCCCTTCATCTTGTGTATTTTTCTACAAAAGATGTGATTACTGATATATTTAAATACGTGTACTCtgctattttgtttttcaaaatataagtaaataaaaagtacaGAATTCAAACCTTTA

Function

symbol description
cited1 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human CITED1 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1).

NR:

description
PREDICTED: cbp/p300-interacting transactivator 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22527 CITED1; Cbp/p300-interacting transactivator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936564.2 False 1232 mRNA 0.47 2 13558623 13561537
XM_026936565.2 False 1158 mRNA 0.46 2 13559315 13561537
XR_003404009.2 True 1867 misc_RNA 0.43 3 13558623 13562266

Neighbor

gene id symbol gene type direction distance location
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding upstream 4675 13533817 ~ 13553948 (+)
si:dkey-33c9.6 LOC108267836 coding upstream 57790 13486536 ~ 13500833 (+)
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding upstream 107800 13443794 ~ 13450823 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding upstream 122027 13420533 ~ 13436596 (+)
dvl2 dvl2 coding upstream 141762 13399435 ~ 13416861 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding downstream 2462 13564728 ~ 13569599 (+)
nhsl2 nhsl2 coding downstream 11368 13573634 ~ 13645984 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding downstream 84915 13647181 ~ 13684599 (+)
rasl11a rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967 coding downstream 130511 13692777 ~ 13699690 (+)
LOC113540276 LOC108267420 coding downstream 162048 13724314 ~ 13738910 (+)
G63936 NA non-coding upstream 53904 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 90897 13459362 ~ 13467726 (+)
G63901 NA non-coding upstream 141182 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 170669 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 291589 13258874 ~ 13267034 (+)
G63976 NA non-coding downstream 7736 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 133383 13695649 ~ 13748072 (+)
G64025 NA non-coding downstream 193278 13755544 ~ 13759751 (+)
G64049 NA non-coding downstream 341175 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 449832 14012098 ~ 14012315 (+)
LOC113539889 LOC108267838 other upstream 83586 13468552 ~ 13475037 (+)
G63903 NA other upstream 139927 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 272789 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 338764 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1263490 12292491 ~ 12295133 (+)
gc2 LOC108267421,LOC108412585 other downstream 143151 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 693478 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 1069764 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2460928 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2747947 16310213 ~ 16319166 (+)

Expression


Co-expression Network