rpl34 (rpl34,LOC107566275,LOC107573163,LOC107681344)


Basic Information

Item Value
gene id rpl34
gene name rpl34,LOC107566275,LOC107573163,LOC107681344
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19347640 ~ 19351961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936567.2
ACTTCCGGTTGTCGAAGGGTTTTCACCTTTCACCCTGGCTCTCTGCCTTCCTCTTCCGTTTCGGTGATACCAGgtcaAGATGGTTCAGCGTCTGACTTACCGCCGTAGGCTTTCCTACAACACCACCTCCAACAAGACCAGACTATCCCGGACCCCTGGTAACCGGATCGTGTATCTCTACACCAAGAAGACTGGCAAGGCTCCCAAGTCCGCATGTGGAATCTGCCCCGGTAGACTGCGTGGTATCCGTGCAGTGAGACCTCAGGTTCTCATGAGGCTCTCAAAGACCAAAAAGCATGTGAGCAGAGCTTATGGTGGTTCCATGTGCGCCAAATGTGTGCGTGACAGGATCAAGCGTGCTTTCCTTATTGAGGAGCAGAAGATCGTTGTCAAAGTACTCAAGGCACAGGCACAGAGTCAGAAATCTAAGTAAATGAGTGTttgtactttaaaataaatgtttcggAACACA

Function

symbol description
rpl34 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in cytosol; endoplasmic reticulum; and ribosome. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL34 (ribosomal protein L34).

NR:

description
60S ribosomal protein L34

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02915 RP-L34e, RPL34; large subunit ribosomal protein L34e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936567.2 True 472 mRNA 0.50 5 19347640 19351961

Neighbor

gene id symbol gene type direction distance location
ostc ostc,LOC107568856,LOC107558957 coding downstream 3121 19340633 ~ 19344519 (-)
LOC113540739 NA coding downstream 124797 19222739 ~ 19222843 (-)
LOC113540506 LOC108267151 coding downstream 298192 19044822 ~ 19049448 (-)
larp7 larp7 coding downstream 305371 19034492 ~ 19042269 (-)
plin2 plin2,LOC100304704,LOC100526709 coding downstream 318742 19025133 ~ 19028898 (-)
LOC113540492 hmx1 coding upstream 74380 19426341 ~ 19429551 (-)
LOC113539975 NA coding upstream 81432 19433393 ~ 19444394 (-)
LOC113540585 LOC108267915 coding upstream 92735 19444696 ~ 19451408 (-)
LOC113540670 ybx2,LOC108267906 coding upstream 119890 19471851 ~ 19479200 (-)
LOC113539952 gps2,LOC106608669 coding upstream 135990 19487951 ~ 19495906 (-)
G67454 NA non-coding downstream 7111 19328348 ~ 19340529 (-)
G67453 NA non-coding downstream 8482 19333074 ~ 19339158 (-)
G67016 NA non-coding downstream 400101 18947318 ~ 18947539 (-)
LOC113539972 NA non-coding downstream 832922 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 960650 18386561 ~ 18386990 (-)
G67527 NA non-coding upstream 253531 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 264487 19616448 ~ 19629949 (-)
G67535 NA non-coding upstream 417396 19769357 ~ 19824919 (-)
G67556 NA non-coding upstream 436000 19787961 ~ 19788548 (-)
G67562 NA non-coding upstream 478589 19830550 ~ 19830750 (-)
LOC113540242 adamtsl1 other downstream 192419 19050150 ~ 19155221 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1507725 17792226 ~ 17839915 (-)
G66281 NA other downstream 1712772 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1903452 17439477 ~ 17444188 (-)
G66053 NA other downstream 1945176 17400594 ~ 17402464 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 528007 19879968 ~ 19881640 (-)
G67587 NA other upstream 536218 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 567519 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 610621 19962582 ~ 19965851 (-)
znf16l LOC108268318 other upstream 1426577 20778538 ~ 20825520 (-)

Expression


Co-expression Network