rnf32 (rnf32)


Basic Information

Item Value
gene id rnf32
gene name rnf32
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28558278 ~ 28588619 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936568.2
CCACGCTGTTGCTAAGCAACCGAGTAATCAGAGTAACCAAGGACACCGGCGCTGCTTCACGACAATGCAGAAGggccgCAGTTCCAGAGCAGACGGCAGGAAGCAGGCCGTGATGGCTGGAGCGCTTCAGGATCACATCATCCGGAGCGTTACACACCTTCAGCGTCCCAACCTTCCCTCACCTTCCAcacgcctcacacacacacacacacaaacacaaacacgccGTGAGGATGAGCAGGAGTTTGTGCTGGACTCGCCTCAGCCTCCGCTCACACTCGctcagaAGCTGGGTTTAGTAGCAGCTCCCAGCAGCAGAAGGCTGACTGTAGACCAGTGGACGGAGGTGAAATCTCGCTCCCTACTGAACGGAGACTCCACTCAGCCCTGCATCATCTGCACCGAGGAGTTCCGCCTCCAGCCGCAGGTTTTGCTTTCCTGTTCTCACGTCTTTCACAAAgCGTGTTTGAGGAAGTTTGAGCGCTTTTCGGGCAGGAAGTGTTGTCCGCTGTGCAGGACGGAGCAGTATGAGACCCGAGTGATACATGACGGGGCGAGACTCTACAGAGAGAAGTGTGCTCTCAGaATTCAGGCCTGGTGGCGAGGCTGCGTCGCCCGAAAGTGGTACAGAGGCGTGAGGAAAGTCGTGCCACCGAATGACCCGCAATTACGGCGCAGATTCTTCGAAGAGAAGTTTCAGGAGATGAACGAGAGCCTGGTGCAGTCATGCAGCAGCGACGTCGACTCGTTCCTGCGTGAAATCGACCGGAGCGTCGCCCAGAGCCGAGACGTCTTCCACCTCTTCGACCGTCTACAGAGCAGcgccagaggagtggaggaagaGGTGTGGATGAAGGCTCAGGAGAAGGCGGTCCAGCGGGACACTCGCGACTGTCCGATCTGTCTGACTCCTCTGAGAAGCGCACACTCGTCCGCTCCGGTCGTCCTGCTTTCCTGCTCCCATCTGTTCCATCAGTCCTGCCTGAGAGCGTCTGAGGACTTCCACCAGGAGGGCGGAGCCACCTGCCCCCTCTGCCGCTGTCACTACGTCTCTGTGCCTGTTTACGACTTCGCCCGTTACCATACCACATAAGaaaaGATGACATCGGTGCTCGCTGTAGAGCCGTTTCTGCATTACATCAGCTTGGATTATGCAAAGCAGAGAGACGTTGCAAGGTCACTGCGCATCTGGACAACAAGGAAATGCAGGAAACGAGGCCaagagcaaaacacacacacacacacacacacacacacacaaggacctTTAAAACACGACTGTGTACGGTATAGAGAAAGTTTGGGCGTTTTATGATGATTAGCTTTTGTATAGAGGTACTTTGTGAAAAGTCTCCATATTTTGCAACCTTCCTTCAAAGGCAGGTTCATGGATTCATGATGttgacaccaaattctgaccccaCCATCTGCAACCTGTCAGAAATCGacaggaatctaaggctacAGCGGGAATCTGGACAGGCGCCTGGTctgatctgatgaatcttgattttcGGTGGctcaggctggtggaggtggtgtggtggtgtgggGAATCTGTTCTTAGCACCCATCAGCCACCTTAATGACCAATCTAGCATTGTTTCAACACCACCACCTGTCTGAGTATTGCTGCCTCAGACAAGGATAAAGCAACACCAAGTAGAACTCGATACCGACAGCGTCGACGGGAATGTCTGATGTCTTTTGTTACTGATTTGTATTCCAGAAATTCTCTTAAACTCCACTTCAAATTTGAAGGAAGTTATTGAAGAAAACCTATTTCAGAtgtttgaccttgctgtgaccttgaccctgtttgaaAAATTCCAAAACCTATTTCATTTGTGCTTTCACTCATTACTCCATCACAAACCCCGCCCCCTTGTGTGAGGAACCTCTTACTGCCCTGACGGTGCCGTCCTCTGAAGTTCACGCGTATGGGTTCAGAGGTGGTGAGTGTGAGAAAAcagcttttgttttcatttt
>XM_034303286.1
CCACGCTGTTGCTAAGCAACCGAGTAATCAGAGTAACCAAGGACACCGGCGCTGCTTCACGACAATGCAGAAGggccgCAGTTCCAGAGCAGACGGCAGGAAGCAGGCCGTGATGGCTGGAGCGCTTCAGGATCACATCATCCGGAGCGTTACACACCTTCAGCGTCCCAACCTTCCCTCACCTTCCAcacgcctcacacacacacacacacaaacacaaacacgccGTGAGGATGAGCAGGAGTTTGTGCTGGACTCGCCTCAGCCTCCGCTCACACTCGctcagaAGCTGGGTTTAGTAGCAGCTCCCAGCAGCAGAAGGCTGACTGTAGACCAGTGGACGGAGGTGAAATCTCGCTCCCTACTGAACGGAGACTCCACTCAGCCCTGCATCATCTGCACCGAGGAGTTCCGCCTCCAGCCGCAGGTTTTGCTTTCCTGTTCTCACGTCTTTCACAAAgCGTGTTTGAGGAAGTTTGAGCGCTTTTCGGGCAGGAAGTGTTGTCCGCTGTGCAGGACGGAGCAGTATGAGACCCGAGTGATACATGACGGGGCGAGACTCTACAGAGAGAAGTGTGCTCTCAGaATTCAGGCCTGGTGGCGAGGCTGCGTCGCCCGAAAGTGGTACAGAGGCGTGAGGAAAGTCGTGCCACCGAATGACCCGCAATTACGGCGCAGATTCTTCGAAGAGAAGTTTCAGGAGATGAACGAGAGCCTGGTGCAGTCATGCAGCAGCGACGTCGACTCGTTCCTGCGTGAAATCGACCGGAGCGTCGCCCAGAGCCGAGACGTCTTCCACCTCTTCGACCGTCTACAGAGCAGcgccagaggagtggaggaagaGGTGTGGATGAAGGCTCAGGAGAAGGCGGTCCAGCGGGACACTCGCGACTGTCCGATCTGTCTGACTCCTCTGAGAAGCGCACACTCGTCCGCTCCGGTCGTCCTGCTTTCCTGCTCCCATCTGTTCCATCAGTCCTGCCTGAGAGCGTCTGAGGACTTCCACCAGGAGGGCGGAGCCACCTGCCCCCTCTGCCGCTGTCACTACGTCTCTGTGCCTGTTTACGACTTCGCCCGTTACCATACCACATAAGCACCACAccgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgtacgGTGGTCATGGTGGTGTCGTCCTTCCTGGGCGTGAGTCCCTGAAAGATGCGAAGACTGTAGAATCCCAC

Function

symbol description
rnf32 Predicted to enable metal ion binding activity. Orthologous to human RNF32 (ring finger protein 32).

NR:

description
PREDICTED: RING finger protein 32 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936568.2 True 1989 mRNA 0.52 9 28558278 28588619
XM_034303286.1 False 1220 mRNA 0.58 9 28558278 28580624

Neighbor

gene id symbol gene type direction distance location
rbm33a rbm33 coding upstream 89426 28443778 ~ 28468852 (+)
en2a en2 coding upstream 158137 28393936 ~ 28400141 (+)
LOC113540125 LOC108267475 coding upstream 298024 28253028 ~ 28260254 (+)
zbtb41 zbtb41 coding upstream 405773 28112849 ~ 28152505 (+)
pfn2l pfn2,pfn2l,LOC107681776 coding upstream 447271 28104505 ~ 28111007 (+)
LOC113540233 NA coding downstream 14286 28602905 ~ 28611157 (+)
slc1a7a slc1a7,slc1a7a,LOC107722044,LOC107681716,LOC107671767,LOC107593788 coding downstream 66137 28654756 ~ 28666631 (+)
aldh9a1b aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 coding downstream 102477 28691096 ~ 28699416 (+)
fzr1b fzr1b,LOC108268046,LOC108430732,LOC107719268,LOC107701330,LOC107722096 coding downstream 127645 28716264 ~ 28722857 (+)
si:ch73-344o19.1 NA coding downstream 150507 28739126 ~ 28745646 (+)
G72336 NA non-coding upstream 86513 28468948 ~ 28471765 (+)
G72276 LOC108267477 non-coding upstream 436136 28114451 ~ 28122142 (+)
G72236 NA non-coding upstream 545819 28011744 ~ 28012459 (+)
LOC113540592 NA non-coding upstream 998851 27556085 ~ 27559427 (+)
G72404 NA non-coding downstream 31205 28619824 ~ 28637201 (+)
G72408 LOC108267757,LOC108260929,LOC107751522,LOC107566606,LOC107702784 non-coding downstream 34621 28623240 ~ 28627973 (+)
G72422 NA non-coding downstream 62795 28651414 ~ 28651621 (+)
G72428 NA non-coding downstream 69657 28658276 ~ 28658536 (+)
G72472 NA non-coding downstream 198998 28787617 ~ 28791836 (+)
insig1 insig1 other upstream 174856 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 220105 28316404 ~ 28338173 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 1151880 27384807 ~ 27406398 (+)
gng7 NA other upstream 1676808 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 2182452 26353189 ~ 26375826 (+)
gng5 NA other downstream 169926 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 204228 28792847 ~ 28797159 (+)
G72873 NA other downstream 285737 28874356 ~ 28912104 (+)
fubp1 fubp1 other downstream 593148 29181767 ~ 29196149 (+)
asip2b NA other downstream 1031374 29619993 ~ 29623797 (+)

Expression


Co-expression Network