LOC113540232 (LOC108267757,LOC108430781,LOC107591375,LOC107668940)


Basic Information

Item Value
gene id LOC113540232
gene name LOC108267757,LOC108430781,LOC107591375,LOC107668940
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28619816 ~ 28628143 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936569.2
tgaagacAAGTCACCGTGAGCTCCTAGTATTTTCTCTTGCTTCACACTGACACATTGCGCCTGTGCTATAAAATATCTACATCCTTCCAAATTTACGCATTTTAACTTTGAACTTTCgTGTAAATCTTGTGGGACGACTGCAGACGAGTGgccaacacacaccatggaCCGCTCTCCAAGCGATATGGCCAGCAACGTCACCAATAAGACGGACCCTCGTTCTCTGAACTCGCGCGTCTTCATTGGGAACCTGAACACCATGCTGGTGACCAAAGCCGACGTGGAGGCCATCTTCAGCAAGTACGGCATGATCGTGGGCTGCTCCGTCCACAAAGGTTACGCTTTCGTCCAGTACTCGAACGAGAGGAACGCTCGAGCCGCCGTGGCCGGAGAGGACGGACGCATGATTGTCGGACAAGTCCTGGACATCAACCTGGCAGGCGAGCCCAAACCTCACCGATCGAAAACCACCAAACGTCCAGCAGGAGATATGTACAGCAGCTCCACGTTTGAGCTCGACTACGATTTCCAGAGAGATTACTACGACAGGATGTACGCGTACCCGTCCCGCGtgccacctcctcctccacccctCTCTCGGGCCGTCATTCCCTCCAAGCGAGCGCGGGTCAGTCTGAGCGGAGGAGGAAGCCGACGCACCAAATCCagcttctcctcttcctccaaaAGCAGCCAGCGCTCTTCATCACGGGCCATTAAAGCAGACGATCTTCAGACCATAAAGAGGGAACTGGCTCAGATCAAACACAAAGTGGATTATCTTCTGGAAAGTTTAGAGCGCATGGAGAAAGATCACAGCAAGAAATCAGAAGGGAAGGTGGTGAAGGCGGAGGTGGGTGAAGTCTCTCAGCAGCACTCGAGCAGTAAgaaggagcgagagagagaggagcaggagATCAACGActctgaagaagaaggagatctgctggaggaagaggaggagGCGAAGAGCATCGGCGGAGAGAACGAGGAAGAGGacggagaggaggaggaagagggagagcACGAGGAAGGCGAGGACGACGGCGACAGCGTAAACGGCGACGACCCATAGACTGTGTTTatcttatttttctctctcacacacacaaacacctcagCATCCAGAGTGAAGAAACGTCAAAGTCTGGACTTCttcttacattaaaaaaaaaaaaaagataaggaaCACAAAGAATgtagatgaacacacacacacacacacacacacacacacacacacttttcttgtGAAGCAATTTTTAAAGTCTGTCCGAATAAACAATCAGTGCTGTGTTACTATTACACTTTTAAAcccattttaaatgtttcattttttcccccaatgtgccatttttctctttttgtttgttcccccaatcagcaggtgtgtgtgtgtgtgtgtgtgtgtaacagttctttttttcctcaaacagcTCCCGAGTGTAACCGTtctctcttaaaaaaataagataatcAACTCcattagaggtttttttttgtttggttggtttccCCTCATGTACGTTCATCTCTACATGTCCTTTTTTTATATCAGTCTTGTTCAAGATAAAAATCACTGTATGAATTTCAATAAAATGGTCAAAATATT
>XM_026936570.2
AAATATCTACATCCTTCCAAATTTACGCATTTTAACTTTGAACTTTCgCTTTTTCACCTCAGTGTAAATCTTGTGGGACGACTGCAGACGAGTGgccaacacacaccatggaCCGCTCTCCAAGCGATATGGCCAGCAACGTCACCAATAAGACGGACCCTCGTTCTCTGAACTCGCGCGTCTTCATTGGGAACCTGAACACCATGCTGGTGACCAAAGCCGACGTGGAGGCCATCTTCAGCAAGTACGGCATGATCGTGGGCTGCTCCGTCCACAAAGGTTACGCTTTCGTCCAGTACTCGAACGAGAGGAACGCTCGAGCCGCCGTGGCCGGAGAGGACGGACGCATGATTGTCGGACAAGTCCTGGACATCAACCTGGCAGGCGAGCCCAAACCTCACCGATCGAAAACCACCAAACGTCCAGCAGGAGATATGTACAGCAGCTCCACGTTTGAGCTCGACTACGATTTCCAGAGAGATTACTACGACAGGATGTACGCGTACCCGTCCCGCGtgccacctcctcctccacccctCTCTCGGGCCGTCATTCCCTCCAAGCGAGCGCGGGTCAGTCTGAGCGGAGGAGGAAGCCGACGCACCAAATCCagcttctcctcttcctccaaaAGCAGCCAGCGCTCTTCATCACGGGCCATTAAAGCAGACGATCTTCAGACCATAAAGAGGGAACTGGCTCAGATCAAACACAAAGTGGATTATCTTCTGGAAAGTTTAGAGCGCATGGAGAAAGATCACAGCAAGAAATCAGAAGGGAAGGTGGTGAAGGCGGAGGTGGGTGAAGTCTCTCAGCAGCACTCGAGCAGTAAgaaggagcgagagagagaggagcaggagATCAACGActctgaagaagaaggagatctgctggaggaagaggaggagGCGAAGAGCATCGGCGGAGAGAACGAGGAAGAGGacggagaggaggaggaagagggagagcACGAGGAAGGCGAGGACGACGGCGACAGCGTAAACGGCGACGACCCATAGACTGTGTTTatcttatttttctctctcacacacacaaacacctcagCATCCAGAGTGAAGAAACGTCAAAGTCTGGACTTCttcttacattaaaaaaaaaaaaaagataaggaaCACAAAGAATgtagatgaacacacacacacacacacacacacacacacacacacttttcttgtGAAGCAATTTTTAAAGTCTGTCCGAATAAACAATCAGTGCTGTGTTACTATTACACTTTTAAAcccattttaaatgtttcattttttcccccaatgtgccatttttctctttttgtttgttcccccaatcagcaggtgtgtgtgtgtgtgtgtgtgtgtaacagttctttttttcctcaaacagcTCCCGAGTGTAACCGTtctctcttaaaaaaataagataatcAACTCcattagaggtttttttttgtttggttggtttccCCTCATGTACGTTCATCTCTACATGTCCTTTTTTTATATCAGTCTTGTTCAAGATAAAAATCACTGTATGAATTTCAATAAAATGGTCAAAATATT
>XM_026936572.2
tgaagacAAGTCACCGTGAGCTCCTAGTATTTTCTCTTGCTTCACACTGACACATTGCGCCTGTGCTATAAAATATCTACATCCTTCCAAATTTACGCATTTTAACTTTGAACTTTCgCCGCTCTCCAAGCGATATGGCCAGCAACGTCACCAATAAGACGGACCCTCGTTCTCTGAACTCGCGCGTCTTCATTGGGAACCTGAACACCATGCTGGTGACCAAAGCCGACGTGGAGGCCATCTTCAGCAAGTACGGCATGATCGTGGGCTGCTCCGTCCACAAAGGTTACGCTTTCGTCCAGTACTCGAACGAGAGGAACGCTCGAGCCGCCGTGGCCGGAGAGGACGGACGCATGATTGTCGGACAAGTCCTGGACATCAACCTGGCAGGCGAGCCCAAACCTCACCGATCGAAAACCACCAAACGTCCAGCAGGAGATATGTACAGCAGCTCCACGTTTGAGCTCGACTACGATTTCCAGAGAGATTACTACGACAGGATGTACGCGTACCCGTCCCGCGtgccacctcctcctccacccctCTCTCGGGCCGTCATTCCCTCCAAGCGAGCGCGGGTCAGTCTGAGCGGAGGAGGAAGCCGACGCACCAAATCCagcttctcctcttcctccaaaAGCAGCCAGCGCTCTTCATCACGGGCCATTAAAGCAGACGATCTTCAGACCATAAAGAGGGAACTGGCTCAGATCAAACACAAAGTGGATTATCTTCTGGAAAGTTTAGAGCGCATGGAGAAAGATCACAGCAAGAAATCAGAAGGGAAGGTGGTGAAGGCGGAGGTGGGTGAAGTCTCTCAGCAGCACTCGAGCAGTAAgaaggagcgagagagagaggagcaggagATCAACGActctgaagaagaaggagatctgctggaggaagaggaggagGCGAAGAGCATCGGCGGAGAGAACGAGGAAGAGGacggagaggaggaggaagagggagagcACGAGGAAGGCGAGGACGACGGCGACAGCGTAAACGGCGACGACCCATAGACTGTGTTTatcttatttttctctctcacacacacaaacacctcagCATCCAGAGTGAAGAAACGTCAAAGTCTGGACTTCttcttacattaaaaaaaaaaaaaagataaggaaCACAAAGAATgtagatgaacacacacacacacacacacacacacacacacacacttttcttgtGAAGCAATTTTTAAAGTCTGTCCGAATAAACAATCAGTGCTGTGTTACTATTACACTTTTAAAcccattttaaatgtttcattttttcccccaatgtgccatttttctctttttgtttgttcccccaatcagcaggtgtgtgtgtgtgtgtgtgtgtgtaacagttctttttttcctcaaacagcTCCCGAGTGTAACCGTtctctcttaaaaaaataagataatcAACTCcattagaggtttttttttgtttggttggtttccCCTCATGTACGTTCATCTCTACATGTCCTTTTTTTATATCAGTCTTGTTCAAGATAAAAATCACTGTATGAATTTCAATAAAATGGTCAAAATATT

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein C-like isoform X4

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936569.2 True 1612 mRNA 0.48 9 28619816 28628143
XM_026936570.2 False 1556 mRNA 0.48 9 28619816 28628073
XM_026936572.2 False 1562 mRNA 0.48 8 28619816 28628143

Neighbor

gene id symbol gene type direction distance location
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding downstream 704 28611191 ~ 28619112 (-)
lmbr1 lmbr1 coding downstream 14573 28574908 ~ 28605243 (-)
shha shh coding downstream 127969 28476431 ~ 28491847 (-)
ro60 trove2 coding downstream 333158 28276696 ~ 28286658 (-)
cdc73 cdc73 coding downstream 344501 28238896 ~ 28275315 (-)
dcaf8 dcaf8 coding upstream 4611 28632754 ~ 28642395 (-)
scp2a scp2,scp2a coding upstream 40836 28668979 ~ 28680704 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 54329 28682472 ~ 28685576 (-)
uck2b uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741 coding upstream 58413 28686556 ~ 28690012 (-)
zte38 LOC108267617,LOC108430736 coding upstream 71526 28699669 ~ 28706523 (-)
G72726 NA non-coding downstream 148045 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 236356 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 240684 28365657 ~ 28379132 (-)
G72658 pfn2,pfn2l non-coding downstream 474950 28081544 ~ 28144866 (-)
G72796 NA non-coding upstream 39180 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 84891 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 154780 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 204241 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 263873 28892016 ~ 28896799 (-)
trnas-uga_2 NA other downstream 383011 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 383549 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 394213 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 578031 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 1063829 27547752 ~ 27555987 (-)
LOC113540437 fam159a other upstream 20181 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 159471 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 245435 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 520495 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 936078 29564221 ~ 29575727 (-)

Expression


Co-expression Network