LOC113540233


Basic Information

Item Value
gene id LOC113540233
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28602905 ~ 28611157 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936573.2
ttggttaaaATTGAGTCGGGGTGTGTCAGGTCAGAATCGGTGGGAAATTTGTACGTATACATCATTCGGCAGCTCGGATACATCAAGCGTCATCACGCCCCAACTTCAGGCATGAAAGAAGTCTGACTACAGGGTGGCTGGAgcaacagccaatcagcagagagaggaagagactgAAAGTGTCCAATGTTACACTATAAGAGGGAAAAGGATGCAAGATTGCAGGAGATGAGCCGATCAAcacatgaatctggaatgatctACGCACTCTCTGATTTTAACTGACACCTCCTGGAAGCCCCTCCCCTTTCTCCTTTGTCACACATGCTCTGGACTGGAGCCGCAGAGCACAATCGCTTGCAGTCacgGCATGCAGTATTCCCAGCAATCTACTGACGTGatcatcagctgctgtttacAATGATAACTCCTTCCAGAAAAGCATCCATCCCACTGCGCCATGTCAAGCAACGTTCTAATGAAGAAACTGCAGCTGGGTTTAAGCACAGTTCAACCCAACATGCTGATTATCGCTCAGTTAGTTTTGCTGCTCTGCGCATGCTGCGCTCAAACGCAGGATTTCATGACGCCCAACGTGAACATCCTTAATGAaattggaaaaataaagaacctggaggaaagaCTGAAAACAGCAGAGGACAAGATGCAGAGCCAAACCACCTTGGTGAATGAGCTGACCTCCAAACTGAAGGAGCTGGGGagtgaaaatggagtGCTGAATATGACAGTCCAAACCTTGCAGGATGAAGTTGAAACTCTGCAGAAAGAAAACGAAGCCAGGAAGGTGGCCTTTTCAGCATCGCTTTTAGCTTCTGGAGAGGGAAACACCGGACCCTATAGTTCTGTGCCGCCCACATTAATCTACAAAAAAGTCGCCACTAACTTTGGAAATGGCTACGACTCAAATACGGGGATTTTCACAGCACCAGTGAAAGGAGTTTACTATTTCCGATTCTACGCTCACTGTCACGGCGGCATCAAAATGGCTGTCAGTCTGTATAAAAACGGAGCTGTTCAGTGCTCTGTGTTTTCCTGGAAGCCCATCACCAACGGCAACGCCAGCAACGGGATTGTCTTAACTCTAGAGAAAGGAGATCAGATCTTCACGAGGCTGTGGGAACAATCCTGGGTTTATGATGATCCAGCAGGCTACACCAGCTTCGGAGGCTTTTTACTTTTCCCCTTGTGAAATGGCGGCCTGTGATATTCCATTAATGAGCAGTTACTGGGATACGATACACAGAAATTTCTTTAATAAGTTCAGCTTTAAAATCCCAAAATTAGTTTTAGATTGATTGTCCACAATTACTCACAACCTCAAGGAATGTTGTTTGCAATTCATAACCCGACACTCGAGCAAATCACATGTGATAGTGAGTGAAACATCacagagaaacatttttttacactgatgtttattggtgtttttttgaaaaaaaaaaatcagaaaaaaaggcGCAAAGAAAAGCttgattttattaataaagctAATGAAGAATGTTTCTAAAACTTAAATGCAGTACCCAGTTTGGAAAAGAATTTATTGAGTAATTGTGGATagtaaaatatttgtgtttgtgtattaatGTGCAGACACGGATCATATCACAATCTGAAAACATGTCAAAGGTAATTTTTTGAAATGTTGGTAGTAAATAAAGGAATATATTTCTCATTGCA
>XM_034303287.1
ttggttaaaATTGAGTCGGGGTGTGTCAGGTCAGAATCGGTGGGAAATTTGTACGTATACATCATTCGGCAGCTCGGATACATCAAGCGTCATCACGCCCCAACTTCAGGCATGAAAGAAGTCTGACTACAGGGTGGCTGGAgcaacagccaatcagcagagagaggaagagactgAAAGTGTCCAATGTTACACTATAAGAGGGAAAAGGATGCAAGATTGGTAGCTTTTTTCTTGCTTATAACAATTTAGTTGTTCTCTAATGATTGATAATTGACAGACGACTTATCCTCGGCGTGGAATTTGTATCATTACCATGTTGTGAAGTTGTTGAGCTAGAAGACTCATGGCTAACAGCAggtgttggtgtttttctctctattttaaCCTCAGTCGTGTTAAACTCGGTTATGTTAGACGAAACCgaaacatgcacacattatATTCTgttaccagacctgccaacctttaagcattttgtgtaggagctccaCAATTTAATATCGCACTACACTAGTACGAGTTAGTGCTTAAAAATATAGCAAAAGAGCAATCTTTTTCCTCCACAATAGCAGGAGATGAGCCGATCAAcacatgaatctggaatgatctACGCACTCTCTGATTTTAACTGACACCTCCTGGAAGCCCCTCCCCTTTCTCCTTTGTCACACATGCTCTGGACTGGAGCCGCAGAGCACAATCGCTTGCAGTCacgGCATGCAGTATTCCCAGCAATCTACTGACGTGatcatcagctgctgtttacAATGATAACTCCTTCCAGAAAAGCATCCATCCCACTGCGCCATGTCAAGCAACGTTCTAATGAAGAAACTGCAGCTGGGTTTAAGCACAGTTCAACCCAACATGCTGATTATCGCTCAGTTAGTTTTGCTGCTCTGCGCATGCTGCGCTCAAACGCAGGATTTCATGACGCCCAACGTGAACATCCTTAATGAaattggaaaaataaagaacctggaggaaagaCTGAAAACAGCAGAGGACAAGATGCAGAGCCAAACCACCTTGGTGAATGAGCTGACCTCCAAACTGAAGGAGCTGGGGagtgaaaatggagtGCTGAATATGACAGTCCAAACCTTGCAGGATGAAGTTGAAACTCTGCAGAAAGAAAACGAAGCCAGGAAGGTGGCCTTTTCAGCATCGCTTTTAGCTTCTGGAGAGGGAAACACCGGACCCTATAGTTCTGTGCCGCCCACATTAATCTACAAAAAAGTCGCCACTAACTTTGGAAATGGCTACGACTCAAATACGGGGATTTTCACAGCACCAGTGAAAGGAGTTTACTATTTCCGATTCTACGCTCACTGTCACGGCGGCATCAAAATGGCTGTCAGTCTGTATAAAAACGGAGCTGTTCAGTGCTCTGTGTTTTCCTGGAAGCCCATCACCAACGGCAACGCCAGCAACGGGATTGTCTTAACTCTAGAGAAAGGAGATCAGATCTTCACGAGGCTGTGGGAACAATCCTGGGTTTATGATGATCCAGCAGGCTACACCAGCTTCGGAGGCTTTTTACTTTTCCCCTTGTGAAATGGCGGCCTGTGATATTCCATTAATGAGCAGTTACTGGGATACGATACACAGAAATTTCTTTAATAAGTTCAGCTTTAAAATCCCAAAATTAGTTTTAGATTGATTGTCCACAATTACTCACAACCTCAAGGAATGTTGTTTGCAATTCATAACCCGACACTCGAGCAAATCACATGTGATAGTGAGTGAAACATCacagagaaacatttttttacactgatgtttattggtgtttttttgaaaaaaaaaaatcagaaaaaaaggcGCAAAGAAAAGCttgattttattaataaagctAATGAAGAATGTTTCTAAAACTTAAATGCAGTACCCAGTTTGGAAAAGAATTTATTGAGTAATTGTGGATagtaaaatatttgtgtttgtgtattaatGTGCAGACACGGATCATATCACAATCTGAAAACATGTCAAAGGTAATTTTTTGAAATGTTGGTAGTAAATAAAGGAATATATTTCTCATTGCA
>XM_034303288.1
GACCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCACACCAAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCACACCAAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCAGACCGAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAGATCAAAGTGTGGAAGGAAGTTCAGACCAAAGTGTGGAAGGAAGTTCAAAAGCTTGGGAGAAACGTTCAGAAGGAAGTTTAGACAGAAGTTTGGAAGGAAATTCGGAAGCTTGGAGGGAGGCATGCAGTATTCCCAGCAATCTACTGACGTGatcatcagctgctgtttacAATGATAACTCCTTCCAGAAAAGCATCCATCCCACTGCGCCATGTCAAGCAACGTTCTAATGAAGAAACTGCAGCTGGGTTTAAGCACAGTTCAACCCAACATGCTGATTATCGCTCAGTTAGTTTTGCTGCTCTGCGCATGCTGCGCTCAAACGCAGGATTTCATGACGCCCAACGTGAACATCCTTAATGAaattggaaaaataaagaacctggaggaaagaCTGAAAACAGCAGAGGACAAGATGCAGAGCCAAACCACCTTGGTGAATGAGCTGACCTCCAAACTGAAGGAGCTGGGGagtgaaaatggagtGCTGAATATGACAGTCCAAACCTTGCAGGATGAAGTTGAAACTCTGCAGAAAGAAAACGAAGCCAGGAAGGTGGCCTTTTCAGCATCGCTTTTAGCTTCTGGAGAGGGAAACACCGGACCCTATAGTTCTGTGCCGCCCACATTAATCTACAAAAAAGTCGCCACTAACTTTGGAAATGGCTACGACTCAAATACGGGGATTTTCACAGCACCAGTGAAAGGAGTTTACTATTTCCGATTCTACGCTCACTGTCACGGCGGCATCAAAATGGCTGTCAGTCTGTATAAAAACGGAGCTGTTCAGTGCTCTGTGTTTTCCTGGAAGCCCATCACCAACGGCAACGCCAGCAACGGGATTGTCTTAACTCTAGAGAAAGGAGATCAGATCTTCACGAGGCTGTGGGAACAATCCTGGGTTTATGATGATCCAGCAGGCTACACCAGCTTCGGAGGCTTTTTACTTTTCCCCTTGTGAAATGGCGGCCTGTGATATTCCATTAATGAGCAGTTACTGGGATACGATACACAGAAATTTCTTTAATAAGTTCAGCTTTAAAATCCCAAAATTAGTTTTAGATTGATTGTCCACAATTACTCACAACCTCAAGGAATGTTGTTTGCAATTCATAACCCGACACTCGAGCAAATCACATGTGATAGTGAGTGAAACATCacagagaaacatttttttacactgatgtttattggtgtttttttgaaaaaaaaaaatcagaaaaaaaggcGCAAAGAAAAGCttgattttattaataaagctAATGAAGAATGTTTCTAAAACTTAAATGCAGTACCCAGTTTGGAAAAGAATTTATTGAGTAATTGTGGATagtaaaatatttgtgtttgtgtattaatGTGCAGACACGGATCATATCACAATCTGAAAACATGTCAAAGGTAATTTTTTGAAATGTTGGTAGTAAATAAAGGAATATATTTCTCATTGCA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936573.2 False 1701 mRNA 0.43 7 28605823 28611157
XM_034303287.1 True 2051 mRNA 0.42 6 28605823 28611157
XM_034303288.1 False 1933 mRNA 0.42 6 28602905 28611157

Neighbor

gene id symbol gene type direction distance location
rnf32 rnf32 coding upstream 14286 28558278 ~ 28588619 (+)
rbm33a rbm33 coding upstream 134053 28443778 ~ 28468852 (+)
en2a en2 coding upstream 202764 28393936 ~ 28400141 (+)
LOC113540125 LOC108267475 coding upstream 342651 28253028 ~ 28260254 (+)
zbtb41 zbtb41 coding upstream 450400 28112849 ~ 28152505 (+)
slc1a7a slc1a7,slc1a7a,LOC107722044,LOC107681716,LOC107671767,LOC107593788 coding downstream 43599 28654756 ~ 28666631 (+)
aldh9a1b aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 coding downstream 79939 28691096 ~ 28699416 (+)
fzr1b fzr1b,LOC108268046,LOC108430732,LOC107719268,LOC107701330,LOC107722096 coding downstream 105107 28716264 ~ 28722857 (+)
si:ch73-344o19.1 NA coding downstream 127969 28739126 ~ 28745646 (+)
otol1a otol1,LOC108267659,LOC107701323,LOC107722646,LOC101471040,LOC102302270,LOC102789861,LOC102202439 coding downstream 168592 28779749 ~ 28784107 (+)
G72378 NA non-coding upstream 23955 28574922 ~ 28578950 (+)
G72336 NA non-coding upstream 131140 28468948 ~ 28471765 (+)
G72276 LOC108267477 non-coding upstream 480763 28114451 ~ 28122142 (+)
G72236 NA non-coding upstream 590446 28011744 ~ 28012459 (+)
LOC113540696 NA non-coding upstream 1045003 27557765 ~ 27557902 (+)
G72404 NA non-coding downstream 8667 28619824 ~ 28637201 (+)
G72408 LOC108267757,LOC108260929,LOC107751522,LOC107566606,LOC107702784 non-coding downstream 12083 28623240 ~ 28627973 (+)
G72422 NA non-coding downstream 40257 28651414 ~ 28651621 (+)
G72428 NA non-coding downstream 47119 28658276 ~ 28658536 (+)
G72472 NA non-coding downstream 176460 28787617 ~ 28791836 (+)
insig1 insig1 other upstream 219483 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 264732 28316404 ~ 28338173 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 1196507 27384807 ~ 27406398 (+)
gng7 NA other upstream 1721435 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 2227079 26353189 ~ 26375826 (+)
gng5 NA other downstream 147388 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 181690 28792847 ~ 28797159 (+)
G72873 NA other downstream 263199 28874356 ~ 28912104 (+)
fubp1 fubp1 other downstream 570610 29181767 ~ 29196149 (+)
asip2b NA other downstream 1008836 29619993 ~ 29623797 (+)

Expression


Co-expression Network